Wall clock time and date at job start Mon Mar 30 2020 03:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47017 * 2 1 4 4 C 1.34774 * 120.00247 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99792 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00294 * 179.97438 * 4 3 2 7 7 H 1.08995 * 109.49085 * 300.04965 * 6 4 3 8 8 C 1.53060 * 109.50183 * 60.10134 * 6 4 3 9 9 N 1.46959 * 109.35791 * 178.38158 * 8 6 4 10 10 C 1.46959 * 110.88008 * 300.67183 * 9 8 6 11 11 C 1.53049 * 109.36157 * 59.32706 * 10 9 8 12 12 N 1.46955 * 109.36603 * 301.59587 * 11 10 9 13 13 C 1.46904 * 111.00126 * 183.18641 * 12 11 10 14 14 C 1.50703 * 109.46763 * 52.17026 * 13 12 11 15 15 H 1.07998 * 119.99570 * 355.98466 * 14 13 12 16 16 C 1.37876 * 119.99695 * 175.70896 * 14 13 12 17 17 N 1.31509 * 120.00469 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99642 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46969 * 90.00084 * 18 16 14 20 20 H 1.48499 * 109.46969 * 209.99757 * 18 16 14 21 21 H 1.48494 * 109.47395 * 329.99884 * 18 16 14 22 22 H 1.08997 * 109.46809 * 299.99711 * 1 2 3 23 23 H 1.08995 * 109.46722 * 60.00298 * 1 2 3 24 24 H 1.09002 * 109.46808 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47502 * 239.99769 * 2 1 3 26 26 H 1.08998 * 109.47441 * 119.99839 * 2 1 3 27 27 H 0.97002 * 119.99515 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.48311 * 298.34463 * 8 6 4 29 29 H 1.08992 * 109.49189 * 58.41186 * 8 6 4 30 30 H 1.00895 * 111.00036 * 64.54797 * 9 8 6 31 31 H 1.08994 * 109.48725 * 179.29357 * 10 9 8 32 32 H 1.08992 * 109.48764 * 299.36075 * 10 9 8 33 33 H 1.08999 * 109.48994 * 181.63112 * 11 10 9 34 34 H 1.09001 * 109.48819 * 61.56625 * 11 10 9 35 35 H 1.08998 * 109.46974 * 292.16732 * 13 12 11 36 36 H 1.09000 * 109.47082 * 172.16448 * 13 12 11 37 37 H 0.96991 * 120.00344 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1315 0.7058 -0.0005 6 6 3.8457 3.0484 -0.0011 7 1 3.4815 3.5625 -0.8905 8 6 3.3384 3.7702 1.2496 9 7 3.8617 5.1434 1.2655 10 6 5.3313 5.1439 1.2651 11 6 5.8386 4.4220 0.0145 12 7 5.3153 3.0489 -0.0015 13 6 5.8416 2.2983 -1.1495 14 6 7.3447 2.4038 -1.1721 15 1 7.8534 3.0240 -0.4489 16 6 8.0708 1.7039 -2.1123 17 7 7.4517 0.9439 -2.9890 18 14 9.9340 1.8352 -2.1407 19 1 10.5176 0.7834 -1.2700 20 1 10.4218 1.6534 -3.5315 21 1 10.3436 3.1731 -1.6434 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8935 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.3879 2.1185 -0.0004 28 1 2.2488 3.7964 1.2375 29 1 3.6799 3.2406 2.1389 30 1 3.4996 5.6774 0.4898 31 1 5.6946 6.1715 1.2643 32 1 5.6954 4.6298 2.1545 33 1 6.9282 4.3958 0.0266 34 1 5.4971 4.9518 -0.8748 35 1 5.4343 2.7123 -2.0718 36 1 5.5521 1.2510 -1.0623 37 1 7.9625 0.4513 -3.6502 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084212332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:15 Heat of formation + Delta-G solvation = -19.119331 kcal Electronic energy + Delta-G solvation = -18222.047173 eV Core-core repulsion = 15420.570927 eV Total energy + Delta-G solvation = -2801.476245 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.88356 -37.76745 -35.12556 -33.90776 -32.09685 -31.43988 -29.74180 -27.29516 -24.78214 -23.94983 -22.49875 -21.55232 -20.59222 -19.58144 -16.73105 -16.29127 -15.89333 -15.53563 -15.35386 -14.69558 -14.36588 -14.01382 -13.84274 -13.73454 -13.20133 -12.54462 -12.40973 -12.22018 -11.96267 -11.81390 -11.51397 -11.19538 -11.04295 -10.90961 -10.68583 -10.63962 -10.50921 -9.90238 -9.58830 -8.86204 -8.66008 -8.32427 -8.03954 -7.23325 -5.94148 -3.94451 3.15324 3.36314 3.41040 3.41884 3.44313 4.41442 4.49169 4.76773 4.97766 5.07701 5.20449 5.28721 5.35616 5.41653 5.48551 5.65378 5.67106 5.75173 5.78816 5.92710 5.94771 6.06226 6.16372 6.50618 6.59015 6.69524 7.08784 7.35645 7.45877 7.50459 7.76201 7.85670 8.23259 8.26878 8.57677 8.80214 9.13471 9.67148 11.17272 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.007838 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.037254 B = 3571.326932 C = 4733.556423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 N -0.741 5.741 4 C 0.514 3.486 5 O -0.494 6.494 6 C 0.031 3.969 7 H 0.051 0.949 8 C 0.073 3.927 9 N -0.684 5.684 10 C 0.053 3.947 11 C 0.025 3.975 12 N -0.511 5.511 13 C 0.175 3.825 14 C -0.510 4.510 15 H 0.062 0.938 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.275 1.275 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.394 0.606 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.334 0.666 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.020 0.980 35 H -0.025 1.025 36 H 0.080 0.920 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.579 4.867 6.252 15.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.008 4.008 3 N -0.397 5.397 4 C 0.299 3.701 5 O -0.365 6.365 6 C -0.084 4.084 7 H 0.068 0.932 8 C -0.058 4.058 9 N -0.311 5.311 10 C -0.076 4.076 11 C -0.105 4.105 12 N -0.237 5.237 13 C 0.050 3.950 14 C -0.548 4.548 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.214 1.214 21 H -0.200 1.200 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.227 0.773 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.151 0.849 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.038 0.962 35 H -0.008 1.008 36 H 0.097 0.903 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.820 3.879 7.226 15.219 hybrid contribution 0.618 0.420 -2.003 2.137 sum -12.203 4.299 5.223 13.952 Atomic orbital electron populations 1.21988 0.94880 1.02879 1.02228 1.21214 0.93650 0.83591 1.02391 1.46076 1.07166 1.08268 1.78199 1.20517 0.81663 0.91602 0.76304 1.90726 1.54133 1.46095 1.45565 1.22334 0.93820 0.93104 0.99128 0.93157 1.22024 0.98309 0.88695 0.96743 1.60872 1.08820 1.12446 1.48970 1.22223 0.86650 0.99871 0.98874 1.22784 1.02944 0.89125 0.95606 1.62229 1.01133 1.12686 1.47669 1.20243 0.94927 0.96344 0.83437 1.21207 0.91212 1.27790 1.14619 0.91977 1.24970 0.98585 0.95267 0.95710 1.69976 1.35419 1.29566 1.18464 0.86525 0.85587 0.78397 0.77025 1.20604 1.21379 1.19952 0.92145 0.92169 0.91087 0.91676 0.91734 0.77284 0.90877 0.89823 0.84913 0.90834 0.90202 0.88429 0.96191 1.00774 0.90257 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 10.03 37.16 0.37 -0.97 16 2 C 0.12 1.44 6.39 -4.04 -0.03 1.42 16 3 N -0.74 -10.17 5.46 -60.29 -0.33 -10.50 16 4 C 0.51 9.79 6.88 -10.99 -0.08 9.72 16 5 O -0.49 -12.11 13.59 5.56 0.08 -12.03 16 6 C 0.03 0.55 2.36 -68.80 -0.16 0.39 16 7 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 8 C 0.07 1.04 5.89 -3.76 -0.02 1.02 16 9 N -0.68 -9.38 6.91 -113.64 -0.79 -10.17 16 10 C 0.05 0.82 6.72 -3.77 -0.03 0.79 16 11 C 0.02 0.49 5.27 -3.77 -0.02 0.47 16 12 N -0.51 -11.52 4.46 -229.31 -1.02 -12.54 16 13 C 0.17 4.88 4.35 -4.97 -0.02 4.86 16 14 C -0.51 -14.99 8.54 -34.44 -0.29 -15.29 16 15 H 0.06 1.77 5.97 -52.49 -0.31 1.45 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -28.02 13.29 55.43 0.74 -27.28 16 18 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.39 4.03 7.93 -40.82 -0.32 3.71 16 28 H 0.07 0.80 7.62 -51.93 -0.40 0.40 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.33 4.10 8.89 -39.29 -0.35 3.75 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.10 2.09 5.85 -51.93 -0.30 1.79 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H -0.03 -0.76 8.14 -51.93 -0.42 -1.18 16 36 H 0.08 2.49 5.20 -51.93 -0.27 2.22 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 295.77 15.07 4.46 4.46 Total: -1.00 -34.88 295.77 -8.00 -42.88 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.74 Total: 3.79 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -0.37 Total: 3.98 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -1.40 Total: -60.48 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.08 Total: -12.03 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.88 -8.00 -42.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084212332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.761 kcal (2) G-P(sol) polarization free energy of solvation -34.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds