Wall clock time and date at job start Mon Mar 30 2020 03:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47017 * 2 1 4 4 C 1.34774 * 120.00247 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99792 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00294 * 179.97438 * 4 3 2 7 7 H 1.08995 * 109.49085 * 300.04965 * 6 4 3 8 8 C 1.53060 * 109.50183 * 60.10134 * 6 4 3 9 9 N 1.46959 * 109.35791 * 178.38158 * 8 6 4 10 10 C 1.46959 * 110.88008 * 300.67183 * 9 8 6 11 11 C 1.53049 * 109.36157 * 59.32706 * 10 9 8 12 12 N 1.46955 * 109.36603 * 301.59587 * 11 10 9 13 13 C 1.46904 * 111.00126 * 183.18641 * 12 11 10 14 14 C 1.50703 * 109.46763 * 52.17026 * 13 12 11 15 15 H 1.07998 * 119.99570 * 355.98466 * 14 13 12 16 16 C 1.37876 * 119.99695 * 175.70896 * 14 13 12 17 17 N 1.31509 * 120.00469 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99642 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46969 * 90.00084 * 18 16 14 20 20 H 1.48499 * 109.46969 * 209.99757 * 18 16 14 21 21 H 1.48494 * 109.47395 * 329.99884 * 18 16 14 22 22 H 1.08997 * 109.46809 * 299.99711 * 1 2 3 23 23 H 1.08995 * 109.46722 * 60.00298 * 1 2 3 24 24 H 1.09002 * 109.46808 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47502 * 239.99769 * 2 1 3 26 26 H 1.08998 * 109.47441 * 119.99839 * 2 1 3 27 27 H 0.97002 * 119.99515 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.48311 * 298.34463 * 8 6 4 29 29 H 1.08992 * 109.49189 * 58.41186 * 8 6 4 30 30 H 1.00895 * 111.00036 * 64.54797 * 9 8 6 31 31 H 1.08994 * 109.48725 * 179.29357 * 10 9 8 32 32 H 1.08992 * 109.48764 * 299.36075 * 10 9 8 33 33 H 1.08999 * 109.48994 * 181.63112 * 11 10 9 34 34 H 1.09001 * 109.48819 * 61.56625 * 11 10 9 35 35 H 1.08998 * 109.46974 * 292.16732 * 13 12 11 36 36 H 1.09000 * 109.47082 * 172.16448 * 13 12 11 37 37 H 0.96991 * 120.00344 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1315 0.7058 -0.0005 6 6 3.8457 3.0484 -0.0011 7 1 3.4815 3.5625 -0.8905 8 6 3.3384 3.7702 1.2496 9 7 3.8617 5.1434 1.2655 10 6 5.3313 5.1439 1.2651 11 6 5.8386 4.4220 0.0145 12 7 5.3153 3.0489 -0.0015 13 6 5.8416 2.2983 -1.1495 14 6 7.3447 2.4038 -1.1721 15 1 7.8534 3.0240 -0.4489 16 6 8.0708 1.7039 -2.1123 17 7 7.4517 0.9439 -2.9890 18 14 9.9340 1.8352 -2.1407 19 1 10.5176 0.7834 -1.2700 20 1 10.4218 1.6534 -3.5315 21 1 10.3436 3.1731 -1.6434 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8935 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.3879 2.1185 -0.0004 28 1 2.2488 3.7964 1.2375 29 1 3.6799 3.2406 2.1389 30 1 3.4996 5.6774 0.4898 31 1 5.6946 6.1715 1.2643 32 1 5.6954 4.6298 2.1545 33 1 6.9282 4.3958 0.0266 34 1 5.4971 4.9518 -0.8748 35 1 5.4343 2.7123 -2.0718 36 1 5.5521 1.2510 -1.0623 37 1 7.9625 0.4513 -3.6502 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084212332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:15 Heat of formation + Delta-G solvation = -49.832902 kcal Electronic energy + Delta-G solvation = -18223.379013 eV Core-core repulsion = 15420.570927 eV Total energy + Delta-G solvation = -2802.808086 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.39054 -39.21399 -36.49241 -35.66276 -34.08342 -32.80402 -30.86401 -29.27090 -26.51086 -25.29727 -23.66878 -23.32900 -22.05641 -21.04766 -18.52387 -18.18184 -17.30569 -16.84384 -16.74412 -16.33742 -15.79022 -15.54591 -15.43380 -15.25671 -14.61796 -14.15905 -14.09845 -13.64289 -13.32094 -12.98396 -12.70045 -12.66467 -12.62191 -12.57215 -12.29990 -12.13544 -12.10401 -11.94231 -11.47459 -10.77504 -10.44754 -10.04586 -9.42244 -9.03499 -8.22202 -6.31765 1.35493 1.39703 1.49518 1.65358 2.14397 2.37258 3.07176 3.14300 3.34972 3.82475 3.96937 4.07132 4.17305 4.23000 4.28009 4.31991 4.47761 4.53611 4.62947 4.87140 4.95269 4.99990 5.07184 5.07889 5.22431 5.26585 5.39172 5.57266 5.60279 5.86558 6.03950 6.27715 6.44671 6.46510 6.69754 6.84625 7.35645 7.38103 8.90390 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.007838 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.037254 B = 3571.326932 C = 4733.556423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.110 3.890 3 N -0.716 5.716 4 C 0.508 3.492 5 O -0.560 6.560 6 C 0.028 3.972 7 H 0.058 0.942 8 C 0.085 3.915 9 N -0.670 5.670 10 C 0.067 3.933 11 C 0.026 3.974 12 N -0.527 5.527 13 C 0.193 3.807 14 C -0.528 4.528 15 H 0.068 0.932 16 C -0.005 4.005 17 N -0.937 5.937 18 Si 0.974 3.026 19 H -0.276 1.276 20 H -0.280 1.280 21 H -0.258 1.258 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.415 0.585 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.349 0.651 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.017 0.983 35 H -0.061 1.061 36 H 0.042 0.958 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.788 6.731 7.483 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 N -0.371 5.371 4 C 0.293 3.707 5 O -0.437 6.437 6 C -0.086 4.086 7 H 0.075 0.925 8 C -0.046 4.046 9 N -0.298 5.298 10 C -0.063 4.063 11 C -0.104 4.104 12 N -0.252 5.252 13 C 0.068 3.932 14 C -0.566 4.566 15 H 0.086 0.914 16 C -0.202 4.202 17 N -0.577 5.577 18 Si 0.798 3.202 19 H -0.202 1.202 20 H -0.206 1.206 21 H -0.182 1.182 22 H 0.098 0.902 23 H 0.088 0.912 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.253 0.747 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.167 0.833 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.035 0.965 35 H -0.043 1.043 36 H 0.060 0.940 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.113 5.802 8.477 17.456 hybrid contribution 0.877 -0.167 -2.384 2.546 sum -13.236 5.635 6.093 15.623 Atomic orbital electron populations 1.21925 0.90766 1.04301 1.03618 1.21363 0.96852 0.82388 1.00769 1.45882 1.05728 1.09805 1.75700 1.20846 0.82897 0.91369 0.75541 1.90703 1.56182 1.47772 1.49044 1.22554 0.91124 0.93302 1.01615 0.92476 1.22079 1.00701 0.88132 0.93724 1.60871 1.07550 1.11933 1.49397 1.22136 0.87607 1.00722 0.95832 1.22846 1.01621 0.87919 0.97989 1.62043 1.04255 1.14126 1.44814 1.19755 0.94566 0.94998 0.83927 1.21611 0.92311 1.27906 1.14811 0.91400 1.26026 1.04460 0.94625 0.95096 1.70139 1.37720 1.30543 1.19312 0.85316 0.78424 0.79098 0.77350 1.20155 1.20577 1.18171 0.90224 0.91181 0.89727 0.94200 0.92718 0.74738 0.86396 0.91065 0.83322 0.87724 0.90931 0.90899 0.96499 1.04328 0.94031 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.03 71.98 0.72 -1.36 16 2 C 0.11 2.72 6.39 86.38 0.55 3.28 16 3 N -0.72 -18.99 5.46 -463.05 -2.53 -21.52 16 4 C 0.51 19.77 6.88 87.66 0.60 20.38 16 5 O -0.56 -29.18 13.59 -3.03 -0.04 -29.22 16 6 C 0.03 1.01 2.36 44.18 0.10 1.12 16 7 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 8 C 0.08 2.18 5.89 86.31 0.51 2.69 16 9 N -0.67 -16.09 6.91 -513.43 -3.55 -19.64 16 10 C 0.07 1.90 6.72 86.31 0.58 2.48 16 11 C 0.03 1.00 5.27 86.31 0.46 1.46 16 12 N -0.53 -24.39 4.46 -879.40 -3.92 -28.31 16 13 C 0.19 11.42 4.35 85.56 0.37 11.79 16 14 C -0.53 -32.23 8.54 25.60 0.22 -32.01 16 15 H 0.07 3.96 5.97 -2.91 -0.02 3.94 16 16 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 17 N -0.94 -60.97 13.29 21.45 0.28 -60.68 16 18 Si 0.97 46.88 29.54 68.60 2.03 48.90 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 22 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.42 7.33 7.93 -92.71 -0.74 6.59 16 28 H 0.12 2.03 7.62 -2.39 -0.02 2.01 16 29 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.35 7.15 8.89 -89.70 -0.80 6.35 16 31 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 3.18 5.85 -2.39 -0.01 3.16 16 34 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 35 H -0.06 -3.87 8.14 -2.39 -0.02 -3.89 16 36 H 0.04 2.81 5.20 -2.39 -0.01 2.80 16 37 H 0.26 15.97 8.31 -92.72 -0.77 15.20 16 Total: -1.00 -81.73 295.77 -3.60 -85.34 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -0.46 Total: 15.14 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 4.58 Total: 10.00 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -9.71 Total: -130.16 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.04 Total: -29.22 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.90 kcal Total: -81.73 -3.60 -85.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084212332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.504 kcal (2) G-P(sol) polarization free energy of solvation -81.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds