Wall clock time and date at job start Mon Mar 30 2020 03:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47303 * 2 1 4 4 C 1.50701 * 109.47260 * 119.99792 * 2 1 3 5 5 O 1.21291 * 120.00189 * 335.96792 * 4 2 1 6 6 N 1.34780 * 119.99784 * 155.69277 * 4 2 1 7 7 C 1.37096 * 119.99678 * 175.36291 * 6 4 2 8 8 H 1.07998 * 120.00365 * 359.97438 * 7 6 4 9 9 C 1.38952 * 119.99746 * 179.97438 * 7 6 4 10 10 N 1.31409 * 119.99963 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00008 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47264 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47227 * 119.99805 * 11 9 7 14 14 H 1.48502 * 109.47505 * 240.00443 * 11 9 7 15 15 N 1.46897 * 109.47260 * 240.00295 * 2 1 3 16 16 C 1.46958 * 110.99687 * 300.10302 * 15 2 1 17 17 C 1.53050 * 109.36538 * 183.18765 * 16 15 2 18 18 N 1.46961 * 109.36704 * 301.60104 * 17 16 15 19 19 C 1.46964 * 110.87747 * 59.31654 * 18 17 16 20 20 C 1.46961 * 111.00411 * 63.90334 * 15 2 1 21 21 H 1.09002 * 109.47258 * 300.00344 * 1 2 3 22 22 H 1.09006 * 109.47366 * 59.99967 * 1 2 3 23 23 H 1.08997 * 109.47075 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47523 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.46937 * 300.00296 * 3 2 1 26 26 H 1.09002 * 109.47244 * 59.99648 * 3 2 1 27 27 H 0.96999 * 119.99820 * 355.35919 * 6 4 2 28 28 H 0.97005 * 119.99767 * 180.02562 * 10 9 7 29 29 H 1.08996 * 109.49097 * 303.15898 * 16 15 2 30 30 H 1.09001 * 109.48577 * 63.22332 * 16 15 2 31 31 H 1.08998 * 109.49107 * 181.63354 * 17 16 15 32 32 H 1.09003 * 109.50766 * 61.57740 * 17 16 15 33 33 H 1.00897 * 111.00097 * 183.18435 * 18 17 16 34 34 H 1.09002 * 109.48381 * 180.71030 * 19 18 17 35 35 H 1.08997 * 109.50504 * 60.66031 * 19 18 17 36 36 H 1.09005 * 109.48463 * 296.78524 * 20 15 2 37 37 H 1.08998 * 109.48234 * 56.82030 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.3300 -0.7857 2.2165 6 7 3.2599 -1.2668 1.2334 7 6 3.7546 -1.8295 2.3814 8 1 3.1610 -1.8265 3.2836 9 6 5.0200 -2.4037 2.3843 10 7 5.7425 -2.4068 1.2867 11 14 5.6945 -3.1697 3.9487 12 1 4.6927 -3.0368 5.0368 13 1 5.9801 -4.6078 3.7125 14 1 6.9467 -2.4742 4.3405 15 7 2.0196 -0.6924 -1.1994 16 6 1.5464 -2.0833 -1.2346 17 6 2.1414 -2.7911 -2.4542 18 7 1.7480 -2.0729 -3.6746 19 6 2.2213 -0.6820 -3.6393 20 6 1.6262 0.0258 -2.4198 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.7931 -1.2692 0.4231 28 1 6.6257 -2.8080 1.2886 29 1 1.8607 -2.5975 -0.3265 30 1 0.4585 -2.0956 -1.3019 31 1 1.7688 -3.8144 -2.4985 32 1 3.2284 -2.8030 -2.3738 33 1 2.0844 -2.5485 -4.4984 34 1 1.9069 -0.1678 -4.5475 35 1 3.3091 -0.6693 -3.5722 36 1 0.5392 0.0374 -2.5004 37 1 1.9985 1.0492 -2.3752 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087638918.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:39 Heat of formation + Delta-G solvation = -25.342747 kcal Electronic energy + Delta-G solvation = -18754.085941 eV Core-core repulsion = 15952.339828 eV Total energy + Delta-G solvation = -2801.746113 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.82359 -37.58073 -35.04079 -33.87960 -31.17378 -30.84571 -30.45679 -26.92171 -25.64739 -24.80360 -23.13353 -21.61010 -19.53476 -18.26168 -17.65456 -16.89759 -15.76437 -14.77935 -14.63850 -14.52373 -14.18706 -14.10247 -13.79472 -13.41729 -13.17145 -12.92925 -12.16955 -11.91545 -11.76685 -11.58771 -11.41846 -11.31724 -11.10009 -10.95246 -10.63410 -10.55782 -10.31571 -10.30176 -10.16350 -9.46686 -8.44327 -8.26887 -7.88925 -7.86587 -6.37038 -3.76925 3.17298 3.28268 3.35580 3.85096 4.19992 4.25313 4.35195 4.91852 5.10451 5.26467 5.36426 5.38021 5.48857 5.55919 5.65848 5.68865 5.75359 5.93153 5.97072 6.03087 6.07932 6.21066 6.21867 6.29575 6.33618 6.53261 6.61651 6.69808 7.05592 7.29685 7.45224 7.50831 7.58613 8.12386 8.70180 9.22118 9.66060 10.17262 10.79683 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025516 B = 0.008246 C = 0.007007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.105830 B = 3394.840370 C = 3995.282238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.097 3.903 3 C -0.133 4.133 4 C 0.451 3.549 5 O -0.601 6.601 6 N -0.545 5.545 7 C -0.302 4.302 8 H 0.101 0.899 9 C 0.025 3.975 10 N -0.894 5.894 11 Si 0.926 3.074 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 N -0.522 5.522 16 C 0.052 3.948 17 C 0.060 3.940 18 N -0.693 5.693 19 C 0.059 3.941 20 C 0.051 3.949 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.403 0.597 28 H 0.270 0.730 29 H 0.089 0.911 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.338 0.662 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.755 3.090 -10.297 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.005 3.995 3 C -0.191 4.191 4 C 0.236 3.764 5 O -0.486 6.486 6 N -0.181 5.181 7 C -0.432 4.432 8 H 0.119 0.881 9 C -0.178 4.178 10 N -0.535 5.535 11 Si 0.753 3.247 12 H -0.193 1.193 13 H -0.208 1.208 14 H -0.208 1.208 15 N -0.248 5.248 16 C -0.076 4.076 17 C -0.069 4.069 18 N -0.324 5.324 19 C -0.070 4.070 20 C -0.077 4.077 21 H 0.087 0.913 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.238 0.762 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.155 0.845 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.103 3.113 -9.390 11.131 hybrid contribution 0.858 -0.549 0.048 1.019 sum -4.245 2.565 -9.342 10.577 Atomic orbital electron populations 1.22152 0.95583 1.02335 1.01656 1.21204 0.93728 0.95041 0.89544 1.21826 1.02227 0.93537 1.01541 1.19484 0.83621 0.84865 0.88472 1.90512 1.57492 1.64561 1.36076 1.41931 1.14120 1.48891 1.13109 1.19801 0.99446 1.33036 0.90940 0.88097 1.25259 0.96287 0.97825 0.98388 1.69658 1.11788 1.44973 1.27039 0.85854 0.78771 0.78505 0.81525 1.19261 1.20790 1.20779 1.62346 1.59199 1.02092 1.01192 1.22240 0.97790 0.88974 0.98631 1.21989 0.98965 0.96774 0.89202 1.60564 1.63999 1.03047 1.04796 1.21981 0.98027 0.89384 0.97645 1.22232 0.98489 0.97741 0.89260 0.91255 0.92983 0.92424 0.91444 0.92433 0.91838 0.76204 0.92018 0.89296 0.94073 0.90674 0.93633 0.84480 0.90880 0.94140 0.94014 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 7.29 37.15 0.27 -2.47 16 2 C 0.10 1.84 0.64 -132.76 -0.08 1.75 16 3 C -0.13 -2.21 8.10 37.16 0.30 -1.91 16 4 C 0.45 11.00 5.35 -10.98 -0.06 10.94 16 5 O -0.60 -16.75 15.67 5.55 0.09 -16.67 16 6 N -0.55 -14.18 4.55 -10.96 -0.05 -14.23 16 7 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 8 H 0.10 3.00 7.17 -52.49 -0.38 2.62 16 9 C 0.02 0.66 5.50 -17.47 -0.10 0.57 16 10 N -0.89 -24.51 13.05 55.50 0.72 -23.78 16 11 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 N -0.52 -9.02 3.75 -220.16 -0.83 -9.85 16 16 C 0.05 0.91 4.83 -3.77 -0.02 0.89 16 17 C 0.06 0.91 6.72 -3.76 -0.03 0.88 16 18 N -0.69 -8.97 6.90 -113.63 -0.78 -9.76 16 19 C 0.06 0.75 6.72 -3.77 -0.03 0.72 16 20 C 0.05 0.72 4.83 -3.77 -0.02 0.70 16 21 H 0.07 1.25 7.87 -51.93 -0.41 0.84 16 22 H 0.05 0.76 6.56 -51.93 -0.34 0.42 16 23 H 0.06 1.05 6.48 -51.93 -0.34 0.71 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.06 0.78 6.28 -51.93 -0.33 0.45 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.40 10.37 7.21 -40.82 -0.29 10.08 16 28 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.09 1.86 6.54 -51.93 -0.34 1.52 16 30 H 0.04 0.72 6.48 -51.93 -0.34 0.38 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.34 3.62 8.90 -39.29 -0.35 3.27 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.04 0.59 6.57 -51.93 -0.34 0.25 16 37 H 0.08 1.04 6.06 -51.93 -0.31 0.72 16 LS Contribution 287.74 15.07 4.34 4.34 Total: -1.00 -30.46 287.74 -6.87 -37.33 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -5.43 Total: 13.06 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 0.10 Total: 3.39 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.94 Total: -57.62 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.09 Total: -16.67 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.46 -6.87 -37.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087638918.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.991 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds