Wall clock time and date at job start Mon Mar 30 2020 03:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47303 * 2 1 4 4 C 1.50701 * 109.47260 * 119.99792 * 2 1 3 5 5 O 1.21291 * 120.00189 * 335.96792 * 4 2 1 6 6 N 1.34780 * 119.99784 * 155.69277 * 4 2 1 7 7 C 1.37096 * 119.99678 * 175.36291 * 6 4 2 8 8 H 1.07998 * 120.00365 * 359.97438 * 7 6 4 9 9 C 1.38952 * 119.99746 * 179.97438 * 7 6 4 10 10 N 1.31409 * 119.99963 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00008 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47264 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47227 * 119.99805 * 11 9 7 14 14 H 1.48502 * 109.47505 * 240.00443 * 11 9 7 15 15 N 1.46897 * 109.47260 * 240.00295 * 2 1 3 16 16 C 1.46958 * 110.99687 * 300.10302 * 15 2 1 17 17 C 1.53050 * 109.36538 * 183.18765 * 16 15 2 18 18 N 1.46961 * 109.36704 * 301.60104 * 17 16 15 19 19 C 1.46964 * 110.87747 * 59.31654 * 18 17 16 20 20 C 1.46961 * 111.00411 * 63.90334 * 15 2 1 21 21 H 1.09002 * 109.47258 * 300.00344 * 1 2 3 22 22 H 1.09006 * 109.47366 * 59.99967 * 1 2 3 23 23 H 1.08997 * 109.47075 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47523 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.46937 * 300.00296 * 3 2 1 26 26 H 1.09002 * 109.47244 * 59.99648 * 3 2 1 27 27 H 0.96999 * 119.99820 * 355.35919 * 6 4 2 28 28 H 0.97005 * 119.99767 * 180.02562 * 10 9 7 29 29 H 1.08996 * 109.49097 * 303.15898 * 16 15 2 30 30 H 1.09001 * 109.48577 * 63.22332 * 16 15 2 31 31 H 1.08998 * 109.49107 * 181.63354 * 17 16 15 32 32 H 1.09003 * 109.50766 * 61.57740 * 17 16 15 33 33 H 1.00897 * 111.00097 * 183.18435 * 18 17 16 34 34 H 1.09002 * 109.48381 * 180.71030 * 19 18 17 35 35 H 1.08997 * 109.50504 * 60.66031 * 19 18 17 36 36 H 1.09005 * 109.48463 * 296.78524 * 20 15 2 37 37 H 1.08998 * 109.48234 * 56.82030 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.3300 -0.7857 2.2165 6 7 3.2599 -1.2668 1.2334 7 6 3.7546 -1.8295 2.3814 8 1 3.1610 -1.8265 3.2836 9 6 5.0200 -2.4037 2.3843 10 7 5.7425 -2.4068 1.2867 11 14 5.6945 -3.1697 3.9487 12 1 4.6927 -3.0368 5.0368 13 1 5.9801 -4.6078 3.7125 14 1 6.9467 -2.4742 4.3405 15 7 2.0196 -0.6924 -1.1994 16 6 1.5464 -2.0833 -1.2346 17 6 2.1414 -2.7911 -2.4542 18 7 1.7480 -2.0729 -3.6746 19 6 2.2213 -0.6820 -3.6393 20 6 1.6262 0.0258 -2.4198 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.7931 -1.2692 0.4231 28 1 6.6257 -2.8080 1.2886 29 1 1.8607 -2.5975 -0.3265 30 1 0.4585 -2.0956 -1.3019 31 1 1.7688 -3.8144 -2.4985 32 1 3.2284 -2.8030 -2.3738 33 1 2.0844 -2.5485 -4.4984 34 1 1.9069 -0.1678 -4.5475 35 1 3.3091 -0.6693 -3.5722 36 1 0.5392 0.0374 -2.5004 37 1 1.9985 1.0492 -2.3752 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087638918.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:39 Heat of formation + Delta-G solvation = -49.820298 kcal Electronic energy + Delta-G solvation = -18755.147367 eV Core-core repulsion = 15952.339828 eV Total energy + Delta-G solvation = -2802.807539 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.36763 -39.22592 -36.48476 -35.90976 -33.20134 -32.19592 -31.70637 -28.32102 -27.42731 -26.29203 -24.46473 -23.19576 -20.94706 -20.04791 -19.51455 -18.39445 -17.21232 -16.71669 -16.12053 -15.87373 -15.74065 -15.44736 -15.26715 -15.03332 -14.68804 -14.51002 -13.64636 -13.49141 -13.33840 -13.10646 -12.93944 -12.81433 -12.64896 -12.43011 -12.32988 -12.12611 -11.90935 -11.86261 -11.57590 -11.46608 -10.25972 -9.98226 -9.51194 -9.20023 -8.45896 -5.94681 1.34212 1.39651 1.54116 2.00110 2.28919 2.83213 3.18792 3.22435 3.30503 3.87466 3.95434 4.12297 4.19304 4.30248 4.38574 4.41959 4.48704 4.56536 4.68973 4.73664 4.82661 4.86895 4.92472 4.98612 5.01160 5.11369 5.21449 5.32319 5.40082 5.87208 5.95498 6.03486 6.19586 6.52372 6.62682 7.11933 7.61150 8.15101 8.70729 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025516 B = 0.008246 C = 0.007007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.105830 B = 3394.840370 C = 3995.282238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.103 3.897 3 C -0.129 4.129 4 C 0.446 3.554 5 O -0.643 6.643 6 N -0.551 5.551 7 C -0.339 4.339 8 H 0.076 0.924 9 C -0.009 4.009 10 N -0.913 5.913 11 Si 0.992 3.008 12 H -0.274 1.274 13 H -0.270 1.270 14 H -0.269 1.269 15 N -0.532 5.532 16 C 0.056 3.944 17 C 0.069 3.931 18 N -0.688 5.688 19 C 0.060 3.940 20 C 0.048 3.952 21 H 0.057 0.943 22 H 0.088 0.912 23 H 0.041 0.959 24 H 0.054 0.946 25 H 0.099 0.901 26 H 0.058 0.942 27 H 0.402 0.598 28 H 0.277 0.723 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.026 0.974 33 H 0.354 0.646 34 H 0.106 0.894 35 H 0.031 0.969 36 H 0.049 0.951 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 3.748 -12.139 13.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.010 3.990 3 C -0.186 4.186 4 C 0.233 3.767 5 O -0.531 6.531 6 N -0.186 5.186 7 C -0.469 4.469 8 H 0.094 0.906 9 C -0.209 4.209 10 N -0.553 5.553 11 Si 0.815 3.185 12 H -0.199 1.199 13 H -0.195 1.195 14 H -0.194 1.194 15 N -0.258 5.258 16 C -0.073 4.073 17 C -0.061 4.061 18 N -0.321 5.321 19 C -0.069 4.069 20 C -0.079 4.079 21 H 0.076 0.924 22 H 0.107 0.893 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.117 0.883 26 H 0.077 0.923 27 H 0.238 0.762 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.044 0.956 33 H 0.173 0.827 34 H 0.124 0.876 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.058 3.778 -11.278 12.925 hybrid contribution 0.819 -0.748 0.578 1.251 sum -4.240 3.029 -10.700 11.901 Atomic orbital electron populations 1.22095 0.94245 1.01744 1.02838 1.21091 0.94569 0.95550 0.87759 1.21819 1.01423 0.92020 1.03371 1.20550 0.82563 0.83642 0.89905 1.90469 1.58340 1.65878 1.38435 1.41944 1.14806 1.49384 1.12455 1.19759 1.00417 1.35552 0.91176 0.90618 1.26044 0.95831 0.97463 1.01608 1.69721 1.12158 1.44900 1.28499 0.84900 0.78042 0.78116 0.77426 1.19882 1.19528 1.19409 1.62318 1.59537 1.02016 1.01917 1.22104 0.97842 0.89343 0.97968 1.21826 0.97498 0.97419 0.89335 1.60541 1.63814 1.03342 1.04357 1.22059 0.97426 0.89152 0.98282 1.22419 0.99127 0.98415 0.87944 0.92390 0.89331 0.93948 0.92694 0.88293 0.92316 0.76250 0.91324 0.93604 0.93916 0.89508 0.95586 0.82656 0.87554 0.95085 0.93285 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 7.29 71.98 0.53 -4.52 16 2 C 0.10 3.85 0.64 2.78 0.00 3.85 16 3 C -0.13 -4.06 8.10 71.98 0.58 -3.48 16 4 C 0.45 22.57 5.35 87.66 0.47 23.04 16 5 O -0.64 -37.49 15.67 -3.06 -0.05 -37.54 16 6 N -0.55 -29.84 4.55 -306.98 -1.40 -31.23 16 7 C -0.34 -19.96 9.68 84.04 0.81 -19.15 16 8 H 0.08 4.75 7.17 -2.91 -0.02 4.73 16 9 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 10 N -0.91 -50.39 13.05 21.66 0.28 -50.11 16 11 Si 0.99 43.80 29.55 68.60 2.03 45.82 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 13 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 14 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 15 N -0.53 -17.87 3.75 -850.44 -3.19 -21.06 16 16 C 0.06 1.98 4.83 86.31 0.42 2.40 16 17 C 0.07 2.03 6.72 86.31 0.58 2.61 16 18 N -0.69 -15.97 6.90 -513.42 -3.54 -19.51 16 19 C 0.06 1.31 6.72 86.31 0.58 1.89 16 20 C 0.05 1.20 4.83 86.31 0.42 1.61 16 21 H 0.06 2.07 7.87 -2.39 -0.02 2.05 16 22 H 0.09 2.31 6.56 -2.38 -0.02 2.29 16 23 H 0.04 1.53 6.48 -2.39 -0.02 1.52 16 24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.10 2.29 6.28 -2.38 -0.01 2.28 16 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.40 21.46 7.21 -92.71 -0.67 20.80 16 28 H 0.28 14.23 8.31 -92.70 -0.77 13.46 16 29 H 0.05 2.00 6.54 -2.39 -0.02 1.99 16 30 H 0.04 1.48 6.48 -2.39 -0.02 1.46 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.35 6.52 8.90 -89.70 -0.80 5.72 16 34 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.05 1.18 6.57 -2.38 -0.02 1.16 16 37 H 0.10 2.11 6.06 -2.39 -0.01 2.10 16 Total: -1.00 -68.03 287.74 -1.40 -69.43 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -0.38 Total: 35.97 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 4.85 Total: 8.22 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -7.85 Total: -121.91 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.05 Total: -37.54 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -68.03 -1.40 -69.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087638918.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.611 kcal (2) G-P(sol) polarization free energy of solvation -68.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds