Wall clock time and date at job start Mon Mar 30 2020 04:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00029 * 179.97438 * 12 11 10 14 14 H 1.09000 * 108.85002 * 36.44258 * 13 12 11 15 15 C 1.54059 * 108.87861 * 277.97899 * 13 12 11 16 16 C 1.54072 * 112.81628 * 197.50574 * 15 13 12 17 17 C 1.50467 * 112.49932 * 318.28558 * 16 15 13 18 18 C 1.54240 * 108.53125 * 94.14165 * 17 16 15 19 19 C 1.45541 * 112.40263 * 280.02243 * 18 17 16 20 20 C 1.50472 * 108.87275 * 154.99883 * 13 12 11 21 21 H 1.09003 * 109.62605 * 95.03729 * 20 13 12 22 22 O 1.42893 * 109.63344 * 334.64659 * 20 13 12 23 23 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 25 25 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 26 26 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 27 27 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 28 28 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 29 29 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 30 30 H 1.00902 * 111.00582 * 303.95797 * 12 11 10 31 31 H 1.09004 * 108.81378 * 318.36647 * 15 13 12 32 32 H 1.09005 * 108.81570 * 76.64441 * 15 13 12 33 33 H 1.09001 * 108.87557 * 197.50483 * 16 15 13 34 34 H 1.08998 * 108.79649 * 79.00853 * 16 15 13 35 35 H 1.09009 * 109.62673 * 334.42936 * 17 16 15 36 36 H 1.09001 * 109.62601 * 213.86045 * 17 16 15 37 37 H 1.09006 * 108.89179 * 159.26638 * 18 17 16 38 38 H 1.09006 * 108.81707 * 40.72552 * 18 17 16 39 39 H 1.08998 * 108.89482 * 301.18222 * 19 18 17 40 40 H 1.08998 * 108.88974 * 182.69033 * 19 18 17 41 41 H 0.96704 * 113.99877 * 180.02562 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7347 -7.3950 0.0018 14 1 0.8367 -7.3092 -0.6101 15 6 1.3208 -7.7362 1.4459 16 6 0.9743 -9.2259 1.6320 17 6 0.1664 -9.7764 0.4882 18 6 1.1311 -10.4225 -0.5271 19 6 1.7682 -9.4390 -1.3903 20 6 2.6364 -8.4382 -0.6006 21 1 3.1729 -8.9601 0.1918 22 8 3.5713 -7.8135 -1.4824 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6042 -0.8894 28 1 0.8534 -5.0451 -0.8886 29 1 0.8541 -5.0445 0.8914 30 1 3.0694 -6.0367 -0.7812 31 1 2.1408 -7.4796 2.1166 32 1 0.4504 -7.1368 1.7131 33 1 0.4053 -9.3431 2.5543 34 1 1.9007 -9.7942 1.7151 35 1 -0.3845 -8.9683 0.0067 36 1 -0.5305 -10.5274 0.8602 37 1 0.5735 -11.1263 -1.1452 38 1 1.9027 -10.9664 0.0180 39 1 0.9963 -8.8888 -1.9283 40 1 2.3974 -9.9586 -2.1129 41 1 4.1843 -8.4297 -1.9064 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130721578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:55 Heat of formation + Delta-G solvation = -79.333755 kcal Electronic energy + Delta-G solvation = -17783.401069 eV Core-core repulsion = 15082.854073 eV Total energy + Delta-G solvation = -2700.546995 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.77879 -36.06957 -35.77359 -33.49094 -32.04347 -31.22688 -29.10988 -26.03999 -24.65109 -23.58446 -22.09206 -20.96562 -19.94742 -19.06513 -17.64852 -16.29742 -16.13328 -15.08677 -14.80258 -14.49741 -14.43022 -14.23746 -13.91251 -13.51945 -13.12757 -12.70759 -12.41862 -12.18285 -11.82557 -11.50495 -11.44213 -11.16662 -10.89318 -10.80027 -10.76185 -10.63014 -10.47625 -10.32889 -10.25898 -9.91098 -9.57074 -9.22891 -8.96392 -8.27562 -7.93666 -5.92944 -3.94552 3.36946 3.42598 3.47025 3.97769 4.28008 4.41092 4.52337 4.75059 4.80981 4.97061 5.07444 5.13204 5.18463 5.23869 5.42722 5.58786 5.64520 5.74121 5.82217 5.86961 5.90445 5.91260 6.00211 6.02084 6.08906 6.16083 6.30258 6.37658 6.47515 6.85200 6.91698 7.25275 7.40936 7.60413 7.77033 7.92135 8.05743 8.08460 8.52339 9.12808 9.68982 11.18633 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044247 B = 0.003986 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.653927 B = 7022.940506 C = 7329.629023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.684 5.684 13 C 0.096 3.904 14 H 0.041 0.959 15 C -0.110 4.110 16 C -0.120 4.120 17 C -0.122 4.122 18 C -0.116 4.116 19 C -0.149 4.149 20 C 0.109 3.891 21 H 0.062 0.938 22 O -0.562 6.562 23 H 0.259 0.741 24 H 0.013 0.987 25 H 0.015 0.985 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.020 0.980 29 H 0.063 0.937 30 H 0.355 0.645 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.785 -22.715 -0.655 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.069 4.069 12 N -0.320 5.320 13 C -0.015 4.015 14 H 0.059 0.941 15 C -0.148 4.148 16 C -0.158 4.158 17 C -0.160 4.160 18 C -0.153 4.153 19 C -0.187 4.187 20 C 0.050 3.950 21 H 0.080 0.920 22 O -0.367 6.367 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.177 0.823 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.416 -22.046 0.200 22.179 hybrid contribution 0.255 0.402 -1.130 1.226 sum 2.671 -21.643 -0.930 21.827 Atomic orbital electron populations 1.69974 1.06057 1.26457 1.51252 1.25033 0.94844 0.99226 0.95467 0.86595 0.79883 0.83501 0.78039 1.20733 1.21275 1.19847 1.21283 0.93083 0.91095 1.50050 0.92668 1.19068 0.94053 0.91436 0.97024 1.21601 0.99119 0.93025 1.00656 1.22153 0.94211 0.91168 0.99399 1.60576 1.20038 1.00289 1.51105 1.21264 0.94659 0.89914 0.95625 0.94124 1.21956 1.01855 0.94917 0.96064 1.21372 0.99866 0.96195 0.98345 1.21404 0.97877 1.00257 0.96447 1.20426 0.98825 0.98004 0.98072 1.21205 1.00409 0.98102 0.99018 1.21633 0.89633 0.92885 0.90888 0.91989 1.86355 1.48718 1.38519 1.63158 0.93111 0.96885 0.96631 0.92668 0.93699 0.96178 0.91862 0.82250 0.90860 0.91913 0.92050 0.92233 0.91409 0.91892 0.92135 0.92104 0.91484 0.91864 0.77511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.29 9.11 -34.44 -0.31 -15.61 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.11 -2.38 5.41 -26.74 -0.14 -2.52 16 11 C 0.06 1.13 5.46 -3.83 -0.02 1.11 16 12 N -0.68 -11.35 6.24 -107.48 -0.67 -12.02 16 13 C 0.10 1.29 1.97 -68.42 -0.13 1.15 16 14 H 0.04 0.58 6.27 -51.93 -0.33 0.26 16 15 C -0.11 -1.34 5.13 -25.62 -0.13 -1.47 16 16 C -0.12 -1.12 5.32 -27.44 -0.15 -1.26 16 17 C -0.12 -1.06 5.61 -27.35 -0.15 -1.21 16 18 C -0.12 -0.90 5.27 -29.60 -0.16 -1.06 16 19 C -0.15 -1.32 4.93 -29.60 -0.15 -1.47 16 20 C 0.11 1.18 3.04 -27.35 -0.08 1.10 16 21 H 0.06 0.64 6.99 -51.93 -0.36 0.28 16 22 O -0.56 -6.35 11.14 -35.23 -0.39 -6.74 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.02 0.39 8.04 -51.93 -0.42 -0.03 16 29 H 0.06 1.21 7.58 -51.93 -0.39 0.82 16 30 H 0.35 6.02 6.46 -39.29 -0.25 5.77 16 31 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 32 H 0.06 0.82 7.78 -51.93 -0.40 0.41 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.52 6.63 -51.93 -0.34 0.17 16 35 H 0.07 0.66 6.97 -51.92 -0.36 0.30 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.44 7.47 -51.93 -0.39 0.05 16 39 H 0.07 0.68 7.47 -51.93 -0.39 0.29 16 40 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 41 H 0.38 2.52 9.05 45.56 0.41 2.94 16 LS Contribution 313.16 15.07 4.72 4.72 Total: -1.00 -31.91 313.16 -8.86 -40.78 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.57 Total: 2.30 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -1.67 Total: -19.25 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.07 Total: -39.09 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.39 Total: -6.74 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.91 -8.86 -40.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130721578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.558 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds