Wall clock time and date at job start Mon Mar 30 2020 04:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00029 * 179.97438 * 12 11 10 14 14 H 1.09000 * 108.85002 * 36.44258 * 13 12 11 15 15 C 1.54059 * 108.87861 * 277.97899 * 13 12 11 16 16 C 1.54072 * 112.81628 * 197.50574 * 15 13 12 17 17 C 1.50467 * 112.49932 * 318.28558 * 16 15 13 18 18 C 1.54240 * 108.53125 * 94.14165 * 17 16 15 19 19 C 1.45541 * 112.40263 * 280.02243 * 18 17 16 20 20 C 1.50472 * 108.87275 * 154.99883 * 13 12 11 21 21 H 1.09003 * 109.62605 * 95.03729 * 20 13 12 22 22 O 1.42893 * 109.63344 * 334.64659 * 20 13 12 23 23 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 25 25 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 26 26 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 27 27 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 28 28 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 29 29 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 30 30 H 1.00902 * 111.00582 * 303.95797 * 12 11 10 31 31 H 1.09004 * 108.81378 * 318.36647 * 15 13 12 32 32 H 1.09005 * 108.81570 * 76.64441 * 15 13 12 33 33 H 1.09001 * 108.87557 * 197.50483 * 16 15 13 34 34 H 1.08998 * 108.79649 * 79.00853 * 16 15 13 35 35 H 1.09009 * 109.62673 * 334.42936 * 17 16 15 36 36 H 1.09001 * 109.62601 * 213.86045 * 17 16 15 37 37 H 1.09006 * 108.89179 * 159.26638 * 18 17 16 38 38 H 1.09006 * 108.81707 * 40.72552 * 18 17 16 39 39 H 1.08998 * 108.89482 * 301.18222 * 19 18 17 40 40 H 1.08998 * 108.88974 * 182.69033 * 19 18 17 41 41 H 0.96704 * 113.99877 * 180.02562 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7347 -7.3950 0.0018 14 1 0.8367 -7.3092 -0.6101 15 6 1.3208 -7.7362 1.4459 16 6 0.9743 -9.2259 1.6320 17 6 0.1664 -9.7764 0.4882 18 6 1.1311 -10.4225 -0.5271 19 6 1.7682 -9.4390 -1.3903 20 6 2.6364 -8.4382 -0.6006 21 1 3.1729 -8.9601 0.1918 22 8 3.5713 -7.8135 -1.4824 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6042 -0.8894 28 1 0.8534 -5.0451 -0.8886 29 1 0.8541 -5.0445 0.8914 30 1 3.0694 -6.0367 -0.7812 31 1 2.1408 -7.4796 2.1166 32 1 0.4504 -7.1368 1.7131 33 1 0.4053 -9.3431 2.5543 34 1 1.9007 -9.7942 1.7151 35 1 -0.3845 -8.9683 0.0067 36 1 -0.5305 -10.5274 0.8602 37 1 0.5735 -11.1263 -1.1452 38 1 1.9027 -10.9664 0.0180 39 1 0.9963 -8.8888 -1.9283 40 1 2.3974 -9.9586 -2.1129 41 1 4.1843 -8.4297 -1.9064 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130721578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:55 Heat of formation + Delta-G solvation = -101.663747 kcal Electronic energy + Delta-G solvation = -17784.369370 eV Core-core repulsion = 15082.854073 eV Total energy + Delta-G solvation = -2701.515297 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67455 -37.27407 -36.83443 -35.39492 -33.49572 -32.43700 -30.46947 -27.81019 -25.67069 -24.78642 -23.65120 -22.12363 -21.44148 -20.01300 -18.59660 -18.38409 -17.32050 -16.54244 -16.18542 -15.99271 -15.29603 -15.24367 -15.04373 -14.63730 -14.39221 -14.11193 -13.74743 -13.60643 -13.44279 -12.97285 -12.67791 -12.58757 -12.47253 -12.29571 -12.01866 -11.66629 -11.64325 -11.53394 -11.41759 -11.30938 -11.21426 -10.95169 -10.68967 -10.56547 -9.29909 -8.20941 -6.32557 1.39339 1.41526 1.53058 2.40768 3.02152 3.11767 3.34990 3.68961 3.88266 4.02974 4.12520 4.18677 4.26538 4.28329 4.34476 4.40267 4.49787 4.68981 4.72195 4.79074 4.92759 4.97906 5.03396 5.11479 5.13779 5.20549 5.25003 5.27799 5.32187 5.35014 5.44477 5.50244 5.52223 5.72087 5.83437 6.11169 6.26699 6.53748 6.83634 7.03313 7.36668 8.91272 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044247 B = 0.003986 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.653927 B = 7022.940506 C = 7329.629023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.091 4.091 11 C 0.073 3.927 12 N -0.685 5.685 13 C 0.092 3.908 14 H 0.028 0.972 15 C -0.107 4.107 16 C -0.113 4.113 17 C -0.124 4.124 18 C -0.114 4.114 19 C -0.142 4.142 20 C 0.112 3.888 21 H 0.073 0.927 22 O -0.582 6.582 23 H 0.264 0.736 24 H -0.011 1.011 25 H -0.008 1.008 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.013 0.987 29 H 0.059 0.941 30 H 0.354 0.646 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 -23.918 -0.740 24.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.129 4.129 11 C -0.056 4.056 12 N -0.321 5.321 13 C -0.018 4.018 14 H 0.046 0.954 15 C -0.146 4.146 16 C -0.151 4.151 17 C -0.161 4.161 18 C -0.152 4.152 19 C -0.180 4.180 20 C 0.053 3.947 21 H 0.091 0.909 22 O -0.391 6.391 23 H 0.073 0.927 24 H 0.007 0.993 25 H 0.010 0.990 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.176 0.824 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 3.717 -23.283 0.108 23.578 hybrid contribution -0.172 0.757 -1.110 1.354 sum 3.545 -22.526 -1.002 22.826 Atomic orbital electron populations 1.70107 1.07865 1.27837 1.51663 1.26028 0.95826 1.03498 0.94573 0.85392 0.78633 0.78116 0.78575 1.19639 1.20497 1.18727 1.21692 0.93543 0.92370 1.50672 0.92262 1.18965 0.94371 0.93168 0.94646 1.21359 0.98007 0.92984 1.00525 1.21856 0.94057 0.90798 0.98877 1.60534 1.19606 1.00882 1.51086 1.21435 0.94695 0.89140 0.96495 0.95382 1.21932 1.00675 0.97076 0.94905 1.21337 1.00787 0.93903 0.99069 1.21422 0.98192 1.00152 0.96367 1.20429 0.99014 0.97801 0.97936 1.21144 0.99918 0.97735 0.99202 1.21590 0.89560 0.92104 0.91420 0.90918 1.86286 1.49392 1.40024 1.63426 0.92707 0.99294 0.98992 0.92877 0.93495 0.96926 0.92275 0.82379 0.91877 0.93597 0.91286 0.90865 0.93191 0.90381 0.90876 0.90670 0.93253 0.89821 0.75137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.80 13.29 21.45 0.28 -58.52 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.54 -32.74 9.11 25.60 0.23 -32.50 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.48 4.97 29.84 0.15 1.63 16 10 C -0.09 -4.16 5.41 30.59 0.17 -4.00 16 11 C 0.07 2.89 5.46 86.30 0.47 3.36 16 12 N -0.69 -22.83 6.24 -493.95 -3.08 -25.91 16 13 C 0.09 2.46 1.97 44.45 0.09 2.55 16 14 H 0.03 0.83 6.27 -2.39 -0.01 0.81 16 15 C -0.11 -2.60 5.13 31.32 0.16 -2.44 16 16 C -0.11 -1.92 5.32 30.14 0.16 -1.76 16 17 C -0.12 -1.92 5.61 30.20 0.17 -1.75 16 18 C -0.11 -1.47 5.27 28.74 0.15 -1.32 16 19 C -0.14 -2.22 4.93 28.74 0.14 -2.08 16 20 C 0.11 2.25 3.04 30.20 0.09 2.35 16 21 H 0.07 1.32 6.99 -2.39 -0.02 1.30 16 22 O -0.58 -12.25 11.14 -148.98 -1.66 -13.91 16 23 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 24 H -0.01 -0.69 8.14 -2.39 -0.02 -0.70 16 25 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.01 0.51 8.04 -2.39 -0.02 0.49 16 29 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 30 H 0.35 11.93 6.46 -89.69 -0.58 11.35 16 31 H 0.06 1.64 8.12 -2.38 -0.02 1.63 16 32 H 0.05 1.23 7.78 -2.38 -0.02 1.21 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.07 6.63 -2.39 -0.02 1.05 16 35 H 0.05 0.96 6.97 -2.38 -0.02 0.94 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.07 0.79 7.47 -2.38 -0.02 0.78 16 39 H 0.05 0.96 7.47 -2.39 -0.02 0.94 16 40 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 41 H 0.40 4.43 9.05 -74.05 -0.67 3.76 16 Total: -1.00 -69.03 313.16 -0.24 -69.27 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -0.25 Total: 16.94 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 2.44 Total: -35.61 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -2.80 Total: -84.43 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -1.66 Total: -13.91 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -69.03 -0.24 -69.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130721578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.392 kcal (2) G-P(sol) polarization free energy of solvation -69.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds