Wall clock time and date at job start Mon Mar 30 2020 04:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46893 * 110.99926 * 2 1 4 4 H 1.09002 * 110.64869 * 323.30301 * 3 2 1 5 5 C 1.54597 * 110.72299 * 86.45661 * 3 2 1 6 6 C 1.53997 * 105.14274 * 140.31435 * 5 3 2 7 7 N 1.47904 * 107.05299 * 1.22461 * 6 5 3 8 8 C 1.46910 * 110.99731 * 214.15449 * 7 6 5 9 9 C 1.50696 * 109.46860 * 176.63635 * 8 7 6 10 10 O 1.21278 * 120.00585 * 6.14081 * 9 8 7 11 11 N 1.34781 * 119.99636 * 186.13649 * 9 8 7 12 12 C 1.46497 * 119.99877 * 179.73133 * 11 9 8 13 13 C 1.50695 * 109.47294 * 180.27728 * 12 11 9 14 14 H 1.08002 * 120.00262 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00304 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99646 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00085 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.47026 * 89.99545 * 17 15 13 19 19 H 1.48496 * 109.46780 * 209.99959 * 17 15 13 20 20 H 1.48500 * 109.46990 * 329.99624 * 17 15 13 21 21 C 1.48528 * 105.82339 * 334.66734 * 7 6 5 22 22 H 1.09004 * 109.46699 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46827 * 299.99916 * 1 2 3 24 24 H 1.08991 * 109.46895 * 59.99920 * 1 2 3 25 25 H 1.00899 * 110.99988 * 123.96084 * 2 1 3 26 26 H 1.09000 * 110.30756 * 21.39879 * 5 3 2 27 27 H 1.09003 * 110.39430 * 259.27256 * 5 3 2 28 28 H 1.09001 * 109.91371 * 241.87464 * 6 5 3 29 29 H 1.08990 * 110.08315 * 120.66429 * 6 5 3 30 30 H 1.09002 * 109.46460 * 56.64118 * 8 7 6 31 31 H 1.09000 * 109.47145 * 296.64387 * 8 7 6 32 32 H 0.96995 * 120.00107 * 359.97438 * 11 9 8 33 33 H 1.09002 * 109.46890 * 300.27502 * 12 11 9 34 34 H 1.09001 * 109.47203 * 60.27336 * 12 11 9 35 35 H 0.97002 * 120.00047 * 180.02562 * 16 15 13 36 36 H 1.09001 * 110.66979 * 157.64024 * 21 7 6 37 37 H 1.09002 * 110.67314 * 280.77623 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3697 2.0233 -0.6095 5 6 2.1081 1.9141 1.4432 6 6 3.4287 2.7057 1.4734 7 7 4.0072 2.6362 0.1140 8 6 5.4748 2.5971 0.1678 9 6 6.0246 2.4436 -1.2269 10 8 5.2776 2.4854 -2.1813 11 7 7.3467 2.2598 -1.4135 12 6 7.8805 2.1047 -2.7689 13 6 9.3731 1.9079 -2.7015 14 1 9.8741 1.8997 -1.7448 15 6 10.0994 1.7394 -3.8614 16 7 9.4894 1.7499 -5.0265 17 14 11.9496 1.4962 -3.7779 18 1 12.2539 0.0467 -3.6708 19 1 12.5768 2.0443 -5.0072 20 1 12.4887 2.2043 -2.5891 21 6 3.4637 1.3951 -0.4945 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8307 -0.5262 0.7813 26 1 2.1447 1.0899 2.1555 27 1 1.2680 2.5711 1.6686 28 1 4.1143 2.2569 2.1921 29 1 3.2364 3.7443 1.7424 30 1 5.7935 1.7527 0.7790 31 1 5.8471 3.5234 0.6053 32 1 7.9443 2.2268 -0.6502 33 1 7.4208 1.2377 -3.2434 34 1 7.6578 2.9985 -3.3516 35 1 10.0003 1.6310 -5.8425 36 1 3.5022 1.4512 -1.5824 37 1 4.0052 0.5206 -0.1339 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150185043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:39 Heat of formation + Delta-G solvation = -56.141677 kcal Electronic energy + Delta-G solvation = -17283.365851 eV Core-core repulsion = 14480.284197 eV Total energy + Delta-G solvation = -2803.081655 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.97660 -39.53227 -36.37127 -35.96722 -34.34634 -32.19673 -29.73847 -29.48623 -27.23812 -25.31965 -24.36401 -22.19579 -21.67889 -21.31092 -18.94760 -17.75302 -17.38561 -16.88574 -16.73784 -16.47573 -15.85181 -15.65324 -14.86140 -14.70266 -14.57063 -14.22884 -14.09538 -13.85885 -13.73401 -13.16270 -12.92113 -12.76511 -12.70381 -12.59644 -12.26853 -12.20955 -12.03651 -11.66368 -11.48184 -10.79840 -10.62884 -9.81647 -9.38298 -9.36180 -8.28801 -6.45753 1.43220 1.45999 1.57217 1.79202 2.28464 2.48236 2.92290 3.05963 3.45038 3.65901 3.79599 4.00624 4.08213 4.28134 4.28870 4.38752 4.50426 4.61530 4.63919 4.72363 4.85495 4.97136 5.03923 5.10715 5.11416 5.18924 5.24475 5.49772 5.69777 5.81045 5.85101 5.92818 6.11726 6.45785 6.65570 6.94876 7.23956 7.53597 8.83545 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.046092 B = 0.004124 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.332727 B = 6787.238080 C = 7096.417825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.701 5.701 3 C 0.090 3.910 4 H 0.079 0.921 5 C -0.148 4.148 6 C 0.038 3.962 7 N -0.522 5.522 8 C 0.042 3.958 9 C 0.491 3.509 10 O -0.585 6.585 11 N -0.709 5.709 12 C 0.268 3.732 13 C -0.556 4.556 14 H 0.085 0.915 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.986 3.014 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.254 1.254 21 C 0.049 3.951 22 H 0.078 0.922 23 H 0.035 0.965 24 H 0.057 0.943 25 H 0.349 0.651 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.408 0.592 33 H -0.015 1.015 34 H -0.015 1.015 35 H 0.269 0.731 36 H 0.059 0.941 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.473 -1.238 18.202 22.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.333 5.333 3 C -0.021 4.021 4 H 0.097 0.903 5 C -0.187 4.187 6 C -0.090 4.090 7 N -0.247 5.247 8 C -0.089 4.089 9 C 0.278 3.722 10 O -0.466 6.466 11 N -0.360 5.360 12 C 0.145 3.855 13 C -0.594 4.594 14 H 0.103 0.897 15 C -0.197 4.197 16 N -0.570 5.570 17 Si 0.809 3.191 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.178 1.178 21 C -0.080 4.080 22 H 0.097 0.903 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.168 0.832 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.147 0.853 32 H 0.244 0.756 33 H 0.003 0.997 34 H 0.003 0.997 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.066 -0.838 16.346 20.943 hybrid contribution 1.158 -0.521 0.797 1.499 sum -11.907 -1.359 17.143 20.917 Atomic orbital electron populations 1.22216 0.86302 1.02652 1.00696 1.60277 1.09192 1.13012 1.50780 1.22384 0.94407 0.89469 0.95880 0.90271 1.23079 0.98088 1.00799 0.96781 1.22939 0.95611 1.01943 0.88492 1.64494 1.04715 1.36822 1.18691 1.22184 0.89536 1.05181 0.92001 1.21355 0.82219 0.76071 0.92531 1.90630 1.58751 1.52057 1.45125 1.46175 1.07609 1.71813 1.10419 1.18502 0.93676 0.93701 0.79613 1.21628 0.91768 1.51541 0.94443 0.89721 1.26101 1.05084 0.94068 0.94478 1.70147 1.38640 1.49543 0.98715 0.85133 0.77066 0.78703 0.78167 1.19587 1.20993 1.17794 1.23102 0.94910 0.89955 0.99996 0.90311 0.94599 0.92446 0.83170 0.89757 0.89676 0.91836 0.89117 0.89575 0.85276 0.75628 0.99746 0.99663 0.92261 0.92280 0.94236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 127.69 1.35 1.83 16 2 N -0.70 -14.42 6.71 -508.33 -3.41 -17.83 16 3 C 0.09 2.07 3.35 46.12 0.15 2.22 16 4 H 0.08 2.02 7.89 -2.39 -0.02 2.00 16 5 C -0.15 -2.40 6.57 31.47 0.21 -2.19 16 6 C 0.04 0.70 6.70 86.45 0.58 1.27 16 7 N -0.52 -14.71 5.11 -887.55 -4.54 -19.25 16 8 C 0.04 1.16 5.31 85.55 0.45 1.62 16 9 C 0.49 20.26 7.46 87.66 0.65 20.92 16 10 O -0.59 -30.14 14.30 -3.02 -0.04 -30.18 16 11 N -0.71 -30.53 5.55 -466.80 -2.59 -33.12 16 12 C 0.27 15.07 5.43 85.63 0.46 15.53 16 13 C -0.56 -30.64 9.28 25.60 0.24 -30.40 16 14 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 15 C 0.00 0.12 5.46 84.66 0.46 0.58 16 16 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 17 Si 0.99 42.63 29.54 68.60 2.03 44.66 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 21 C 0.05 1.50 5.27 86.65 0.46 1.96 16 22 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 23 H 0.04 0.46 8.13 -2.39 -0.02 0.44 16 24 H 0.06 1.00 8.08 -2.39 -0.02 0.98 16 25 H 0.35 5.91 8.26 -89.69 -0.74 5.17 16 26 H 0.08 1.08 7.61 -2.39 -0.02 1.06 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 0.96 7.68 -2.39 -0.02 0.94 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 1.93 7.98 -2.39 -0.02 1.91 16 31 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.41 14.26 8.32 -92.71 -0.77 13.49 16 33 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 34 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.06 2.40 6.43 -2.39 -0.02 2.39 16 37 H 0.04 1.20 8.01 -2.39 -0.02 1.18 16 Total: -1.00 -74.16 304.34 -3.70 -77.86 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -0.45 Total: 21.35 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 5.02 Total: 13.34 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -10.25 Total: -127.03 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.04 Total: -30.18 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -74.16 -3.70 -77.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150185043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.715 kcal (2) G-P(sol) polarization free energy of solvation -74.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds