Wall clock time and date at job start Mon Mar 30 2020 03:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 5 5 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 6 6 H 1.08994 * 110.63040 * 308.10532 * 5 2 1 7 7 C 1.55146 * 110.70846 * 71.40123 * 5 2 1 8 8 C 1.54897 * 101.65578 * 154.03260 * 7 5 2 9 9 N 1.47843 * 104.79968 * 322.93194 * 8 7 5 10 10 C 1.46899 * 111.00413 * 146.36208 * 9 8 7 11 11 C 1.50703 * 109.46754 * 69.15386 * 10 9 8 12 12 O 1.21290 * 120.00128 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99372 * 179.97438 * 11 10 9 14 14 C 1.37096 * 119.99766 * 180.02562 * 13 11 10 15 15 H 1.08004 * 120.00046 * 0.02562 * 14 13 11 16 16 C 1.38949 * 120.00372 * 180.02562 * 14 13 11 17 17 N 1.31408 * 119.99966 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00298 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47449 * 90.00068 * 18 16 14 20 20 H 1.48505 * 109.47274 * 210.00394 * 18 16 14 21 21 H 1.48504 * 109.47082 * 329.99547 * 18 16 14 22 22 C 1.47442 * 108.56460 * 24.09313 * 9 8 7 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.00896 * 111.00210 * 59.99865 * 4 2 1 27 27 H 1.00906 * 110.99720 * 183.95451 * 4 2 1 28 28 H 1.09006 * 110.99027 * 272.13196 * 7 5 2 29 29 H 1.09004 * 110.98802 * 35.93616 * 7 5 2 30 30 H 1.08997 * 110.37684 * 204.09997 * 8 7 5 31 31 H 1.09005 * 110.37399 * 81.76224 * 8 7 5 32 32 H 1.08997 * 109.46897 * 189.15791 * 10 9 8 33 33 H 1.09004 * 109.46966 * 309.15934 * 10 9 8 34 34 H 0.96996 * 120.00607 * 0.02562 * 13 11 10 35 35 H 0.97001 * 120.00858 * 179.97438 * 17 16 14 36 36 H 1.09005 * 109.89145 * 239.60612 * 22 9 8 37 37 H 1.08999 * 110.02344 * 118.49219 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0401 -0.7212 1.2492 6 1 1.5746 -0.3121 2.1458 7 6 1.7866 -2.2482 1.1431 8 6 2.8993 -2.8146 2.0598 9 7 4.0643 -1.9344 1.8277 10 6 4.8580 -1.7774 3.0537 11 6 5.5382 -3.0815 3.3822 12 8 5.3778 -4.0465 2.6653 13 7 6.3254 -3.1749 4.4721 14 6 6.9446 -4.3611 4.7708 15 1 6.8018 -5.2205 4.1324 16 6 7.7559 -4.4577 5.8947 17 7 7.9292 -3.4123 6.6717 18 14 8.6001 -6.0737 6.3012 19 1 9.9306 -6.1164 5.6432 20 1 8.7713 -6.1866 7.7720 21 1 7.7692 -7.2031 5.8117 22 6 3.5777 -0.6299 1.3425 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6961 -0.2350 -2.0386 27 1 3.0262 -0.7626 -1.1910 28 1 0.7982 -2.5072 1.5228 29 1 1.9119 -2.5943 0.1171 30 1 3.1369 -3.8406 1.7787 31 1 2.5907 -2.7682 3.1042 32 1 5.6102 -1.0031 2.9028 33 1 4.2028 -1.4919 3.8767 34 1 6.4540 -2.4030 5.0453 35 1 8.4952 -3.4797 7.4566 36 1 3.9971 -0.4204 0.3584 37 1 3.8607 0.1573 2.0412 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168545422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:25 Heat of formation + Delta-G solvation = -33.935184 kcal Electronic energy + Delta-G solvation = -17568.049778 eV Core-core repulsion = 14765.931069 eV Total energy + Delta-G solvation = -2802.118709 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.45494 -37.81758 -35.49356 -33.79337 -31.34403 -30.86677 -29.14393 -28.59341 -26.43986 -24.15850 -22.41536 -20.83234 -19.40009 -19.11910 -17.81979 -16.60462 -15.75805 -15.63147 -15.15865 -14.61363 -14.36455 -14.00480 -13.82453 -13.51522 -12.91618 -12.66785 -12.43738 -12.22830 -12.09964 -11.69284 -11.55598 -11.40403 -11.07768 -10.87110 -10.70460 -10.54215 -10.39983 -10.35162 -10.16650 -9.44019 -8.72880 -8.35868 -7.90996 -7.75606 -6.36517 -3.76984 3.21443 3.29409 3.35588 3.98327 4.12227 4.33845 4.35822 4.59984 4.71369 5.00284 5.14863 5.23395 5.26540 5.30828 5.46293 5.57293 5.63186 5.68947 5.78914 5.87517 5.91442 5.97538 6.03020 6.13213 6.18286 6.36269 6.59769 6.65021 7.06353 7.34837 7.39977 7.40944 7.60098 8.12393 8.68518 9.24125 9.61090 10.13784 10.81570 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.066480 B = 0.004301 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.078681 B = 6508.473750 C = 6636.804559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.099 3.901 3 H 0.032 0.968 4 N -0.843 5.843 5 C -0.108 4.108 6 H 0.074 0.926 7 C -0.117 4.117 8 C 0.051 3.949 9 N -0.503 5.503 10 C 0.040 3.960 11 C 0.446 3.554 12 O -0.576 6.576 13 N -0.568 5.568 14 C -0.297 4.297 15 H 0.103 0.897 16 C 0.021 3.979 17 N -0.904 5.904 18 Si 0.929 3.071 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.270 1.270 22 C 0.046 3.954 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.336 0.664 27 H 0.346 0.654 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.036 0.964 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.391 0.609 35 H 0.270 0.730 36 H 0.070 0.930 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 9.457 -9.204 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.012 4.012 3 H 0.050 0.950 4 N -0.375 5.375 5 C -0.128 4.128 6 H 0.093 0.907 7 C -0.155 4.155 8 C -0.076 4.076 9 N -0.227 5.227 10 C -0.091 4.091 11 C 0.231 3.769 12 O -0.459 6.459 13 N -0.205 5.205 14 C -0.426 4.426 15 H 0.120 0.880 16 C -0.180 4.180 17 N -0.546 5.546 18 Si 0.757 3.243 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.082 4.082 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.148 0.852 27 H 0.161 0.839 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.224 0.776 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.798 7.966 -9.597 17.169 hybrid contribution 0.631 1.138 1.200 1.770 sum -11.168 9.104 -8.397 16.677 Atomic orbital electron populations 1.21809 0.94639 1.02638 1.01112 1.21142 0.95191 0.94358 0.90555 0.95041 1.58739 1.17054 1.58073 1.03645 1.22497 0.95907 0.97417 0.96977 0.90740 1.22757 0.97623 0.93129 1.02005 1.23049 0.88307 0.98991 0.97266 1.63218 1.20650 1.09469 1.29319 1.22112 0.97564 0.98098 0.91359 1.19768 0.84083 0.89552 0.83485 1.90506 1.65509 1.38944 1.50927 1.41863 1.42179 1.13413 1.23076 1.19699 1.23862 0.90439 1.08625 0.87966 1.25242 0.97882 0.98873 0.96031 1.69611 1.39453 1.29648 1.15904 0.85867 0.79499 0.81649 0.77325 1.20441 1.21000 1.19439 1.22887 0.93266 0.91595 1.00454 0.92492 0.93102 0.91593 0.85162 0.83867 0.91908 0.88651 0.89048 0.94586 0.89656 0.93573 0.77587 0.91971 0.91160 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.38 37.16 0.35 -0.88 16 2 C 0.10 0.94 3.14 -67.71 -0.21 0.73 16 3 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 4 N -0.84 -7.95 7.86 -4.66 -0.04 -7.98 16 5 C -0.11 -1.25 2.78 -88.79 -0.25 -1.50 16 6 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 7 C -0.12 -1.55 5.84 -24.59 -0.14 -1.70 16 8 C 0.05 0.87 5.74 -2.30 -0.01 0.86 16 9 N -0.50 -8.80 4.86 -232.69 -1.13 -9.93 16 10 C 0.04 0.76 5.06 -4.98 -0.03 0.73 16 11 C 0.45 10.92 7.58 -10.98 -0.08 10.84 16 12 O -0.58 -16.05 14.61 5.55 0.08 -15.96 16 13 N -0.57 -14.81 5.29 -10.96 -0.06 -14.87 16 14 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 15 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 16 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 17 N -0.90 -25.05 13.05 55.50 0.72 -24.33 16 18 Si 0.93 21.43 29.55 -169.99 -5.02 16.40 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 C 0.05 0.62 6.30 -2.84 -0.02 0.60 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.62 7.68 -51.93 -0.40 0.22 16 26 H 0.34 2.53 9.04 -39.29 -0.36 2.17 16 27 H 0.35 3.44 7.20 -39.29 -0.28 3.15 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 1.34 6.89 -51.93 -0.36 0.98 16 30 H 0.09 1.82 7.38 -51.93 -0.38 1.43 16 31 H 0.04 0.62 7.62 -51.93 -0.40 0.23 16 32 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 33 H 0.05 0.80 7.85 -51.93 -0.41 0.40 16 34 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 35 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.07 0.88 6.26 -51.93 -0.32 0.56 16 37 H 0.05 0.62 7.56 -51.93 -0.39 0.23 16 LS Contribution 297.12 15.07 4.48 4.48 Total: -1.00 -31.26 297.12 -7.26 -38.53 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -5.66 Total: 12.10 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.63 Total: 1.57 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.50 Total: -57.11 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.08 Total: -15.96 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.26 -7.26 -38.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168545422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.590 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds