Wall clock time and date at job start Mon Mar 30 2020 03:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 5 5 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 6 6 H 1.08994 * 110.63040 * 308.10532 * 5 2 1 7 7 C 1.55146 * 110.70846 * 71.40123 * 5 2 1 8 8 C 1.54897 * 101.65578 * 154.03260 * 7 5 2 9 9 N 1.47843 * 104.79968 * 322.93194 * 8 7 5 10 10 C 1.46899 * 111.00413 * 146.36208 * 9 8 7 11 11 C 1.50703 * 109.46754 * 69.15386 * 10 9 8 12 12 O 1.21290 * 120.00128 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99372 * 179.97438 * 11 10 9 14 14 C 1.37096 * 119.99766 * 180.02562 * 13 11 10 15 15 H 1.08004 * 120.00046 * 0.02562 * 14 13 11 16 16 C 1.38949 * 120.00372 * 180.02562 * 14 13 11 17 17 N 1.31408 * 119.99966 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00298 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47449 * 90.00068 * 18 16 14 20 20 H 1.48505 * 109.47274 * 210.00394 * 18 16 14 21 21 H 1.48504 * 109.47082 * 329.99547 * 18 16 14 22 22 C 1.47442 * 108.56460 * 24.09313 * 9 8 7 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.00896 * 111.00210 * 59.99865 * 4 2 1 27 27 H 1.00906 * 110.99720 * 183.95451 * 4 2 1 28 28 H 1.09006 * 110.99027 * 272.13196 * 7 5 2 29 29 H 1.09004 * 110.98802 * 35.93616 * 7 5 2 30 30 H 1.08997 * 110.37684 * 204.09997 * 8 7 5 31 31 H 1.09005 * 110.37399 * 81.76224 * 8 7 5 32 32 H 1.08997 * 109.46897 * 189.15791 * 10 9 8 33 33 H 1.09004 * 109.46966 * 309.15934 * 10 9 8 34 34 H 0.96996 * 120.00607 * 0.02562 * 13 11 10 35 35 H 0.97001 * 120.00858 * 179.97438 * 17 16 14 36 36 H 1.09005 * 109.89145 * 239.60612 * 22 9 8 37 37 H 1.08999 * 110.02344 * 118.49219 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0401 -0.7212 1.2492 6 1 1.5746 -0.3121 2.1458 7 6 1.7866 -2.2482 1.1431 8 6 2.8993 -2.8146 2.0598 9 7 4.0643 -1.9344 1.8277 10 6 4.8580 -1.7774 3.0537 11 6 5.5382 -3.0815 3.3822 12 8 5.3778 -4.0465 2.6653 13 7 6.3254 -3.1749 4.4721 14 6 6.9446 -4.3611 4.7708 15 1 6.8018 -5.2205 4.1324 16 6 7.7559 -4.4577 5.8947 17 7 7.9292 -3.4123 6.6717 18 14 8.6001 -6.0737 6.3012 19 1 9.9306 -6.1164 5.6432 20 1 8.7713 -6.1866 7.7720 21 1 7.7692 -7.2031 5.8117 22 6 3.5777 -0.6299 1.3425 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6961 -0.2350 -2.0386 27 1 3.0262 -0.7626 -1.1910 28 1 0.7982 -2.5072 1.5228 29 1 1.9119 -2.5943 0.1171 30 1 3.1369 -3.8406 1.7787 31 1 2.5907 -2.7682 3.1042 32 1 5.6102 -1.0031 2.9028 33 1 4.2028 -1.4919 3.8767 34 1 6.4540 -2.4030 5.0453 35 1 8.4952 -3.4797 7.4566 36 1 3.9971 -0.4204 0.3584 37 1 3.8607 0.1573 2.0412 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168545422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:25 Heat of formation + Delta-G solvation = -58.862316 kcal Electronic energy + Delta-G solvation = -17569.130699 eV Core-core repulsion = 14765.931069 eV Total energy + Delta-G solvation = -2803.199631 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.78524 -39.51790 -36.60297 -35.81895 -33.30884 -32.21679 -29.95701 -29.69303 -28.04062 -25.98452 -23.35646 -22.18131 -20.98228 -20.28684 -19.88377 -17.96340 -17.18388 -16.78735 -16.48529 -16.16046 -15.88189 -15.60214 -15.28673 -14.75751 -14.28787 -14.08753 -13.81142 -13.47100 -13.15254 -12.99911 -12.94626 -12.72576 -12.59520 -12.42463 -12.18314 -12.10530 -11.72185 -11.58163 -11.47301 -11.42929 -10.29361 -10.00638 -9.44214 -9.14980 -8.46408 -5.95192 1.37894 1.41082 1.54159 2.06132 2.28998 2.85642 3.20036 3.39166 3.59289 3.72001 3.82496 4.04316 4.27428 4.36800 4.38377 4.40914 4.49025 4.54411 4.57752 4.71215 4.77582 5.03395 5.07662 5.09649 5.12152 5.25015 5.40760 5.41113 5.54926 5.91522 6.07735 6.19064 6.36602 6.61590 6.70143 7.13449 7.56761 8.13371 8.71247 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.066480 B = 0.004301 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.078681 B = 6508.473750 C = 6636.804559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.103 3.897 3 H 0.044 0.956 4 N -0.852 5.852 5 C -0.099 4.099 6 H 0.084 0.916 7 C -0.104 4.104 8 C 0.051 3.949 9 N -0.525 5.525 10 C 0.053 3.947 11 C 0.440 3.560 12 O -0.616 6.616 13 N -0.576 5.576 14 C -0.333 4.333 15 H 0.077 0.923 16 C -0.013 4.013 17 N -0.922 5.922 18 Si 0.993 3.007 19 H -0.271 1.271 20 H -0.270 1.270 21 H -0.273 1.273 22 C 0.045 3.955 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.348 0.652 27 H 0.343 0.657 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.029 0.971 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.395 0.605 35 H 0.278 0.722 36 H 0.079 0.921 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.278 10.921 -9.242 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.008 4.008 3 H 0.062 0.938 4 N -0.385 5.385 5 C -0.119 4.119 6 H 0.103 0.897 7 C -0.143 4.143 8 C -0.077 4.077 9 N -0.249 5.249 10 C -0.078 4.078 11 C 0.228 3.772 12 O -0.501 6.501 13 N -0.214 5.214 14 C -0.463 4.463 15 H 0.095 0.905 16 C -0.213 4.213 17 N -0.563 5.563 18 Si 0.817 3.183 19 H -0.196 1.196 20 H -0.194 1.194 21 H -0.198 1.198 22 C -0.082 4.082 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.161 0.839 27 H 0.157 0.843 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.229 0.771 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.358 9.471 -9.640 18.312 hybrid contribution 0.791 0.690 1.177 1.577 sum -11.567 10.161 -8.463 17.569 Atomic orbital electron populations 1.21791 0.93742 1.02257 1.02174 1.21121 0.95809 0.94500 0.89413 0.93775 1.58729 1.16852 1.58590 1.04323 1.22476 0.94660 0.96059 0.98680 0.89731 1.22632 0.96711 0.94424 1.00487 1.22933 0.89703 0.97378 0.97680 1.63116 1.21226 1.11970 1.28616 1.21978 0.98216 0.94837 0.92799 1.20826 0.83034 0.91186 0.82184 1.90480 1.66575 1.41093 1.51995 1.41930 1.42668 1.12946 1.23818 1.19659 1.26067 0.90957 1.09607 0.90472 1.26034 0.97721 1.02280 0.95222 1.69670 1.39475 1.31084 1.16060 0.84926 0.78348 0.77329 0.77718 1.19596 1.19421 1.19831 1.22983 0.94566 0.89659 1.01001 0.91611 0.91946 0.92670 0.83871 0.84266 0.90582 0.89466 0.93064 0.95245 0.87445 0.91684 0.77083 0.91299 0.90252 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.38 71.98 0.68 -1.33 16 2 C 0.10 1.66 3.14 44.92 0.14 1.80 16 3 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 4 N -0.85 -14.29 7.86 -168.67 -1.33 -15.61 16 5 C -0.10 -2.04 2.78 -9.61 -0.03 -2.07 16 6 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 7 C -0.10 -2.66 5.84 31.98 0.19 -2.48 16 8 C 0.05 1.75 5.74 86.77 0.50 2.25 16 9 N -0.52 -18.04 4.86 -890.11 -4.33 -22.37 16 10 C 0.05 1.96 5.06 85.56 0.43 2.39 16 11 C 0.44 22.02 7.58 87.66 0.66 22.69 16 12 O -0.62 -35.70 14.61 -3.06 -0.04 -35.74 16 13 N -0.58 -30.63 5.29 -306.98 -1.62 -32.26 16 14 C -0.33 -19.48 9.68 84.04 0.81 -18.67 16 15 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 16 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 17 N -0.92 -50.64 13.05 21.66 0.28 -50.35 16 18 Si 0.99 43.80 29.55 68.60 2.03 45.82 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 C 0.05 1.10 6.30 86.65 0.55 1.65 16 23 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.05 0.91 7.68 -2.39 -0.02 0.89 16 26 H 0.35 4.44 9.04 -89.70 -0.81 3.63 16 27 H 0.34 6.19 7.20 -89.69 -0.65 5.55 16 28 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.09 2.39 6.89 -2.38 -0.02 2.38 16 30 H 0.05 2.15 7.38 -2.39 -0.02 2.13 16 31 H 0.03 1.03 7.62 -2.38 -0.02 1.01 16 32 H 0.11 3.48 8.03 -2.39 -0.02 3.46 16 33 H 0.07 2.16 7.85 -2.38 -0.02 2.14 16 34 H 0.40 19.92 7.90 -92.71 -0.73 19.18 16 35 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.08 1.81 6.26 -2.38 -0.01 1.79 16 37 H 0.06 1.41 7.56 -2.39 -0.02 1.39 16 Total: -1.00 -68.32 297.12 -1.71 -70.03 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: -1.10 Total: 34.49 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 4.40 Total: 5.99 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -6.99 Total: -120.59 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -0.04 Total: -35.74 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -68.32 -1.71 -70.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168545422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.170 kcal (2) G-P(sol) polarization free energy of solvation -68.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds