Wall clock time and date at job start Mon Mar 30 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48494 * 109.47485 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46928 * 300.00572 * 3 2 1 6 6 H 1.48505 * 109.46854 * 60.00390 * 3 2 1 7 7 C 1.37882 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00266 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00135 * 0.27234 * 11 10 9 13 13 C 1.50706 * 119.99766 * 179.97438 * 11 10 9 14 14 N 1.46902 * 109.46577 * 179.97438 * 13 11 10 15 15 C 1.48561 * 110.99884 * 285.41766 * 14 13 11 16 16 C 1.54379 * 104.59542 * 200.96512 * 15 14 13 17 17 C 1.54263 * 105.05964 * 23.85089 * 16 15 14 18 18 C 1.48560 * 110.99800 * 170.00227 * 14 13 11 19 19 H 1.09000 * 110.41139 * 40.25531 * 18 14 13 20 20 C 1.52997 * 110.40941 * 277.93731 * 18 14 13 21 21 N 1.46897 * 109.47685 * 54.99896 * 20 18 14 22 22 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47103 * 60.00166 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 25 25 H 0.96999 * 119.99691 * 359.97438 * 10 9 7 26 26 H 1.09000 * 109.47161 * 299.99737 * 13 11 10 27 27 H 1.09001 * 109.46740 * 59.99879 * 13 11 10 28 28 H 1.09008 * 110.41378 * 319.74032 * 15 14 13 29 29 H 1.08994 * 110.41550 * 82.18405 * 15 14 13 30 30 H 1.08998 * 110.32535 * 264.95815 * 16 15 14 31 31 H 1.09001 * 110.41375 * 142.79181 * 16 15 14 32 32 H 1.08997 * 110.32528 * 241.10511 * 17 16 15 33 33 H 1.09002 * 110.32195 * 118.90099 * 17 16 15 34 34 H 1.09003 * 109.47078 * 175.00139 * 20 18 14 35 35 H 1.09000 * 109.47144 * 294.99690 * 20 18 14 36 36 H 1.00901 * 110.99919 * 56.04086 * 21 20 18 37 37 H 1.00893 * 111.00376 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0065 13 6 2.7330 -6.0289 -0.0016 14 7 1.9984 -7.3010 -0.0015 15 6 1.4134 -7.5778 1.3357 16 6 1.1701 -9.1023 1.3459 17 6 2.1579 -9.6728 0.3073 18 6 2.9149 -8.4450 -0.2429 19 1 3.8511 -8.3024 0.2968 20 6 3.1829 -8.6072 -1.7404 21 7 3.6891 -7.3413 -2.2873 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.1566 -3.4355 -0.0009 26 1 3.3595 -5.9708 -0.8917 27 1 3.3597 -5.9714 0.8883 28 1 2.1147 -7.2996 2.1225 29 1 0.4721 -7.0419 1.4573 30 1 0.1437 -9.3239 1.0536 31 1 1.3792 -9.5141 2.3332 32 1 1.6163 -10.1743 -0.4947 33 1 2.8529 -10.3632 0.7853 34 1 3.9241 -9.3916 -1.8940 35 1 2.2570 -8.8779 -2.2480 36 1 4.5118 -7.0356 -1.7896 37 1 3.8743 -7.4228 -3.2758 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168919266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:41 Heat of formation + Delta-G solvation = -29.376634 kcal Electronic energy + Delta-G solvation = -17594.529780 eV Core-core repulsion = 14792.608745 eV Total energy + Delta-G solvation = -2801.921036 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.54640 -37.92203 -34.38970 -33.96930 -32.30476 -31.98239 -29.02808 -27.76221 -25.76300 -23.86177 -22.27744 -20.90713 -20.34501 -19.42567 -16.97562 -16.13970 -16.12238 -15.53446 -15.04876 -14.86887 -14.66341 -14.43104 -13.98348 -13.73662 -13.07997 -12.62185 -12.38851 -12.00252 -11.88460 -11.71810 -11.57806 -11.24798 -11.04379 -10.92335 -10.87852 -10.76913 -10.49991 -10.24533 -9.29437 -8.93919 -8.65433 -8.55305 -8.14124 -7.69728 -6.09936 -4.16121 3.27316 3.34067 3.37341 3.64632 3.86863 4.29469 4.34930 4.50806 4.76344 4.86838 4.96322 5.11735 5.22402 5.26002 5.37045 5.55722 5.56790 5.62936 5.75874 5.80925 5.84479 6.02679 6.07369 6.16559 6.34678 6.93287 7.14039 7.17456 7.30678 7.45345 7.61569 7.63975 7.79474 8.06323 8.79256 8.91234 9.32513 9.51828 11.00456 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041573 B = 0.004692 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.353598 B = 5966.657341 C = 6363.541756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.062 3.938 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.252 3.748 10 N -0.719 5.719 11 C 0.503 3.497 12 O -0.542 6.542 13 C 0.016 3.984 14 N -0.467 5.467 15 C 0.030 3.970 16 C -0.122 4.122 17 C -0.117 4.117 18 C 0.058 3.942 19 H 0.045 0.955 20 C 0.078 3.922 21 N -0.840 5.840 22 H 0.264 0.736 23 H 0.025 0.975 24 H 0.023 0.977 25 H 0.387 0.613 26 H 0.129 0.871 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.080 0.920 36 H 0.335 0.665 37 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.621 -17.984 -0.160 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.368 5.368 11 C 0.288 3.712 12 O -0.420 6.420 13 C -0.116 4.116 14 N -0.191 5.191 15 C -0.098 4.098 16 C -0.161 4.161 17 C -0.155 4.155 18 C -0.051 4.051 19 H 0.063 0.937 20 C -0.053 4.053 21 N -0.370 5.370 22 H 0.074 0.926 23 H 0.043 0.957 24 H 0.041 0.959 25 H 0.219 0.781 26 H 0.147 0.853 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.099 0.901 36 H 0.148 0.852 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.462 -17.644 -0.369 19.161 hybrid contribution 2.414 0.555 0.445 2.516 sum 9.876 -17.089 0.076 19.738 Atomic orbital electron populations 1.69995 1.06096 1.27045 1.49246 1.24958 0.94890 0.99395 0.94846 0.86380 0.79826 0.83107 0.77692 1.19675 1.20831 1.20871 1.21291 0.93263 0.90558 1.52713 0.91933 1.19035 0.88349 0.82005 0.97529 1.46402 1.10783 1.06158 1.73491 1.20314 0.89576 0.83961 0.77371 1.90622 1.16822 1.84701 1.49844 1.22552 0.95987 0.89701 1.03363 1.64981 1.27502 0.99585 1.27040 1.23224 1.01225 0.95633 0.89723 1.22274 1.00090 0.95248 0.98456 1.22274 0.97964 0.96397 0.98896 1.22706 0.94832 0.92095 0.95460 0.93669 1.21776 0.99567 0.89663 0.94255 1.58757 1.38521 1.31852 1.07898 0.92592 0.95657 0.95855 0.78083 0.85350 0.93639 0.94631 0.88805 0.90927 0.91701 0.90866 0.91629 0.95591 0.90139 0.85206 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.54 -15.05 9.28 -34.44 -0.32 -15.37 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.95 5.43 -5.20 -0.03 6.92 16 10 N -0.72 -15.95 5.55 -61.47 -0.34 -16.29 16 11 C 0.50 10.79 7.67 -10.98 -0.08 10.71 16 12 O -0.54 -13.93 15.24 5.56 0.08 -13.84 16 13 C 0.02 0.25 5.14 -4.97 -0.03 0.22 16 14 N -0.47 -7.14 4.63 -223.57 -1.03 -8.17 16 15 C 0.03 0.44 5.92 -2.18 -0.01 0.42 16 16 C -0.12 -1.37 7.00 -25.35 -0.18 -1.55 16 17 C -0.12 -1.14 6.55 -25.35 -0.17 -1.31 16 18 C 0.06 0.66 2.68 -66.07 -0.18 0.48 16 19 H 0.05 0.48 8.00 -51.93 -0.42 0.06 16 20 C 0.08 0.79 6.50 -3.83 -0.02 0.77 16 21 N -0.84 -8.61 7.30 -10.37 -0.08 -8.69 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.39 7.36 8.32 -40.82 -0.34 7.02 16 26 H 0.13 1.83 4.63 -51.93 -0.24 1.59 16 27 H 0.05 0.64 7.77 -51.93 -0.40 0.24 16 28 H 0.04 0.49 7.75 -51.92 -0.40 0.09 16 29 H 0.09 1.65 7.25 -51.93 -0.38 1.28 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.08 0.91 7.98 -51.93 -0.41 0.49 16 36 H 0.33 2.93 8.01 -39.29 -0.31 2.62 16 37 H 0.34 2.91 9.08 -39.30 -0.36 2.56 16 LS Contribution 299.76 15.07 4.52 4.52 Total: -1.00 -33.78 299.76 -7.98 -41.77 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.74 Total: 7.54 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.11 Total: 2.97 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.72 Total: -59.14 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.08 Total: -13.84 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.78 -7.98 -41.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168919266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.389 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds