Wall clock time and date at job start Mon Mar 30 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48494 * 109.47485 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46928 * 300.00572 * 3 2 1 6 6 H 1.48505 * 109.46854 * 60.00390 * 3 2 1 7 7 C 1.37882 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00266 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00135 * 0.27234 * 11 10 9 13 13 C 1.50706 * 119.99766 * 179.97438 * 11 10 9 14 14 N 1.46902 * 109.46577 * 179.97438 * 13 11 10 15 15 C 1.48561 * 110.99884 * 285.41766 * 14 13 11 16 16 C 1.54379 * 104.59542 * 200.96512 * 15 14 13 17 17 C 1.54263 * 105.05964 * 23.85089 * 16 15 14 18 18 C 1.48560 * 110.99800 * 170.00227 * 14 13 11 19 19 H 1.09000 * 110.41139 * 40.25531 * 18 14 13 20 20 C 1.52997 * 110.40941 * 277.93731 * 18 14 13 21 21 N 1.46897 * 109.47685 * 54.99896 * 20 18 14 22 22 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47103 * 60.00166 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 25 25 H 0.96999 * 119.99691 * 359.97438 * 10 9 7 26 26 H 1.09000 * 109.47161 * 299.99737 * 13 11 10 27 27 H 1.09001 * 109.46740 * 59.99879 * 13 11 10 28 28 H 1.09008 * 110.41378 * 319.74032 * 15 14 13 29 29 H 1.08994 * 110.41550 * 82.18405 * 15 14 13 30 30 H 1.08998 * 110.32535 * 264.95815 * 16 15 14 31 31 H 1.09001 * 110.41375 * 142.79181 * 16 15 14 32 32 H 1.08997 * 110.32528 * 241.10511 * 17 16 15 33 33 H 1.09002 * 110.32195 * 118.90099 * 17 16 15 34 34 H 1.09003 * 109.47078 * 175.00139 * 20 18 14 35 35 H 1.09000 * 109.47144 * 294.99690 * 20 18 14 36 36 H 1.00901 * 110.99919 * 56.04086 * 21 20 18 37 37 H 1.00893 * 111.00376 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0065 13 6 2.7330 -6.0289 -0.0016 14 7 1.9984 -7.3010 -0.0015 15 6 1.4134 -7.5778 1.3357 16 6 1.1701 -9.1023 1.3459 17 6 2.1579 -9.6728 0.3073 18 6 2.9149 -8.4450 -0.2429 19 1 3.8511 -8.3024 0.2968 20 6 3.1829 -8.6072 -1.7404 21 7 3.6891 -7.3413 -2.2873 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.1566 -3.4355 -0.0009 26 1 3.3595 -5.9708 -0.8917 27 1 3.3597 -5.9714 0.8883 28 1 2.1147 -7.2996 2.1225 29 1 0.4721 -7.0419 1.4573 30 1 0.1437 -9.3239 1.0536 31 1 1.3792 -9.5141 2.3332 32 1 1.6163 -10.1743 -0.4947 33 1 2.8529 -10.3632 0.7853 34 1 3.9241 -9.3916 -1.8940 35 1 2.2570 -8.8779 -2.2480 36 1 4.5118 -7.0356 -1.7896 37 1 3.8743 -7.4228 -3.2758 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168919266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:41 Heat of formation + Delta-G solvation = -57.971427 kcal Electronic energy + Delta-G solvation = -17595.769744 eV Core-core repulsion = 14792.608745 eV Total energy + Delta-G solvation = -2803.160999 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.85640 -39.43181 -36.06677 -35.17282 -34.30502 -33.22637 -29.92876 -29.68040 -27.27455 -24.97888 -24.14167 -21.98002 -21.25352 -21.20634 -18.86790 -17.45504 -17.33921 -17.01828 -16.68933 -16.19752 -15.88210 -15.70985 -15.49198 -14.87675 -14.59110 -14.19216 -13.96198 -13.63412 -13.30390 -13.04271 -12.79888 -12.74099 -12.60435 -12.21940 -12.14132 -12.12014 -11.85084 -11.44197 -11.36503 -10.79870 -10.61402 -9.75846 -9.42395 -9.24430 -8.27822 -6.44692 1.43460 1.45308 1.58827 1.91615 2.32383 2.54389 3.06856 3.19924 3.50635 3.82218 3.98765 4.08112 4.13901 4.23542 4.37190 4.41203 4.59981 4.65423 4.77649 4.86445 4.99994 5.06998 5.07890 5.13900 5.25784 5.28603 5.32520 5.52705 5.74483 5.87603 5.99951 6.10519 6.36919 6.65135 6.67381 7.03148 7.25338 7.62361 8.84968 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041573 B = 0.004692 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.353598 B = 5966.657341 C = 6363.541756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.712 5.712 11 C 0.496 3.504 12 O -0.592 6.592 13 C 0.033 3.967 14 N -0.497 5.497 15 C 0.026 3.974 16 C -0.118 4.118 17 C -0.111 4.111 18 C 0.058 3.942 19 H 0.063 0.937 20 C 0.081 3.919 21 N -0.859 5.859 22 H 0.268 0.732 23 H -0.018 1.018 24 H -0.017 1.017 25 H 0.406 0.594 26 H 0.150 0.850 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.344 0.656 37 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.861 -18.793 -0.129 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.363 5.363 11 C 0.284 3.716 12 O -0.472 6.472 13 C -0.099 4.099 14 N -0.221 5.221 15 C -0.102 4.102 16 C -0.156 4.156 17 C -0.149 4.149 18 C -0.050 4.050 19 H 0.081 0.919 20 C -0.050 4.050 21 N -0.392 5.392 22 H 0.077 0.923 23 H 0.000 1.000 24 H 0.000 1.000 25 H 0.242 0.758 26 H 0.167 0.833 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.159 0.841 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.761 -18.493 -0.342 21.399 hybrid contribution 1.338 0.746 0.426 1.590 sum 12.099 -17.747 0.084 21.479 Atomic orbital electron populations 1.70164 1.08400 1.28471 1.50168 1.26115 0.95776 1.04033 0.93836 0.85074 0.79105 0.77118 0.77672 1.17479 1.20434 1.20427 1.21662 0.94320 0.90523 1.52651 0.89724 1.18472 0.88737 0.84574 0.93617 1.46158 1.10926 1.05514 1.73685 1.21478 0.90037 0.84784 0.75348 1.90600 1.19530 1.85406 1.51688 1.22463 0.94244 0.87699 1.05460 1.64897 1.29315 1.00474 1.27451 1.23166 0.99380 0.97706 0.89997 1.22252 1.00223 0.92744 1.00356 1.22301 0.97925 0.96146 0.98550 1.22862 0.94811 0.90770 0.96583 0.91903 1.21742 0.99657 0.90432 0.93149 1.58673 1.39306 1.32350 1.08849 0.92289 1.00000 0.99954 0.75847 0.83306 0.91068 0.93845 0.93255 0.91891 0.89474 0.90599 0.88707 0.92630 0.91871 0.84143 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.99 43.13 29.54 68.60 2.03 45.16 16 4 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.55 -31.11 9.28 25.60 0.24 -30.87 16 8 H 0.08 4.28 7.60 -2.91 -0.02 4.26 16 9 C 0.27 15.57 5.43 85.63 0.46 16.03 16 10 N -0.71 -32.15 5.55 -466.79 -2.59 -34.74 16 11 C 0.50 21.77 7.67 87.66 0.67 22.45 16 12 O -0.59 -32.11 15.24 -3.01 -0.05 -32.15 16 13 C 0.03 0.99 5.14 85.56 0.44 1.43 16 14 N -0.50 -14.74 4.63 -861.23 -3.99 -18.72 16 15 C 0.03 0.75 5.92 86.45 0.51 1.26 16 16 C -0.12 -2.46 7.00 31.49 0.22 -2.24 16 17 C -0.11 -1.84 6.55 31.49 0.21 -1.63 16 18 C 0.06 1.14 2.68 45.06 0.12 1.26 16 19 H 0.06 1.05 8.00 -2.39 -0.02 1.03 16 20 C 0.08 1.41 6.50 86.30 0.56 1.98 16 21 N -0.86 -15.59 7.30 -186.73 -1.36 -16.96 16 22 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 23 H -0.02 -1.18 8.14 -2.38 -0.02 -1.20 16 24 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 25 H 0.41 15.07 8.32 -92.71 -0.77 14.30 16 26 H 0.15 3.92 4.63 -2.39 -0.01 3.91 16 27 H 0.07 1.82 7.77 -2.39 -0.02 1.81 16 28 H 0.04 1.16 7.75 -2.38 -0.02 1.15 16 29 H 0.05 1.85 7.25 -2.39 -0.02 1.84 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.23 7.75 -2.39 -0.02 1.21 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 1.33 7.98 -2.39 -0.02 1.31 16 36 H 0.34 4.96 8.01 -89.69 -0.72 4.24 16 37 H 0.35 5.26 9.08 -89.70 -0.81 4.44 16 Total: -1.00 -77.36 299.76 -2.99 -80.35 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -1.21 Total: 24.49 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 3.90 Total: 10.21 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -7.65 Total: -128.07 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.05 Total: -32.15 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -77.36 -2.99 -80.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168919266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.380 kcal (2) G-P(sol) polarization free energy of solvation -77.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds