Wall clock time and date at job start Mon Mar 30 2020 03:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.45207 * 2 1 4 4 C 1.53035 * 109.46160 * 119.97075 * 2 1 3 5 5 C 1.53127 * 109.27680 * 179.19688 * 4 2 1 6 6 H 1.09002 * 109.52241 * 182.44351 * 5 4 2 7 7 N 1.46898 * 109.52258 * 62.24914 * 5 4 2 8 8 C 1.53123 * 109.15851 * 302.34528 * 5 4 2 9 9 C 1.53031 * 109.27870 * 57.65405 * 8 5 4 10 10 N 1.46842 * 109.52438 * 300.81937 * 9 8 5 11 11 C 1.46906 * 110.99778 * 185.83764 * 10 9 8 12 12 C 1.50691 * 109.46901 * 75.50391 * 11 10 9 13 13 O 1.21293 * 120.00355 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00164 * 180.02562 * 12 11 10 15 15 C 1.37101 * 120.00259 * 179.97438 * 14 12 11 16 16 H 1.07998 * 120.00291 * 359.97438 * 15 14 12 17 17 C 1.38951 * 119.99586 * 179.97438 * 15 14 12 18 18 N 1.31406 * 120.00272 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99675 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46834 * 269.99891 * 19 17 15 21 21 H 1.48494 * 109.47139 * 149.99795 * 19 17 15 22 22 H 1.48503 * 109.46943 * 29.99561 * 19 17 15 23 23 H 1.09001 * 109.46947 * 171.86448 * 1 2 3 24 24 H 1.09004 * 109.47337 * 291.86087 * 1 2 3 25 25 H 1.08998 * 109.47219 * 51.86712 * 1 2 3 26 26 H 1.09004 * 109.50639 * 59.25979 * 4 2 1 27 27 H 1.08997 * 109.53888 * 299.15263 * 4 2 1 28 28 H 1.00898 * 110.99882 * 180.31421 * 7 5 4 29 29 H 1.00900 * 111.00255 * 304.27177 * 7 5 4 30 30 H 1.08997 * 109.50124 * 297.71454 * 8 5 4 31 31 H 1.09003 * 109.53102 * 177.61935 * 8 5 4 32 32 H 1.08997 * 109.46682 * 180.79942 * 9 8 5 33 33 H 1.09007 * 109.46432 * 60.83941 * 9 8 5 34 34 H 1.09000 * 109.47280 * 315.49753 * 11 10 9 35 35 H 1.09006 * 109.46616 * 195.49978 * 11 10 9 36 36 H 0.97010 * 119.99633 * 359.97438 * 14 12 11 37 37 H 0.96992 * 120.00533 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5710 -0.7359 1.2356 6 1 3.9380 -1.2862 2.1020 7 7 4.0759 0.6429 1.2781 8 6 4.0548 -1.4187 -0.0467 9 6 3.4864 -0.6777 -1.2590 10 7 2.0193 -0.6918 -1.1993 11 6 1.4373 -0.1106 -2.4166 12 6 1.5529 -1.0977 -3.5493 13 8 2.0696 -2.1788 -3.3613 14 7 1.0829 -0.7789 -4.7716 15 6 1.1885 -1.6768 -5.8023 16 1 1.6487 -2.6394 -5.6350 17 6 0.7035 -1.3482 -7.0623 18 7 0.1432 -0.1771 -7.2658 19 14 0.8481 -2.5712 -8.4669 20 1 2.1336 -2.3576 -9.1789 21 1 -0.2801 -2.3749 -9.4123 22 1 0.8057 -3.9536 -7.9258 23 1 -0.3633 -1.0173 -0.1454 24 1 -0.3634 0.3827 0.9538 25 1 -0.3633 0.6346 -0.8083 26 1 1.6659 -1.7447 1.2577 27 1 1.6895 -0.1987 2.1403 28 1 5.0847 0.6591 1.2644 29 1 3.6951 1.1910 0.5214 30 1 3.7125 -2.4535 -0.0594 31 1 5.1439 -1.3952 -0.0835 32 1 3.8174 -1.1698 -2.1735 33 1 3.8403 0.3533 -1.2533 34 1 1.9726 0.8031 -2.6748 35 1 0.3865 0.1208 -2.2421 36 1 0.6700 0.0859 -4.9221 37 1 0.0685 0.4581 -6.5367 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168939120.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:48 Heat of formation + Delta-G solvation = -34.609345 kcal Electronic energy + Delta-G solvation = -18089.021112 eV Core-core repulsion = 15286.873169 eV Total energy + Delta-G solvation = -2802.147943 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.80656 -37.95652 -34.94055 -34.12438 -32.23570 -31.07854 -29.88012 -27.24867 -26.68020 -24.27294 -22.85384 -21.32374 -19.52179 -18.96570 -17.85455 -16.39609 -16.25260 -15.63256 -15.22181 -14.60321 -14.45836 -14.25665 -13.84591 -13.72944 -13.45767 -12.72763 -12.42668 -12.15735 -11.93966 -11.75884 -11.63198 -11.17764 -11.17210 -10.94616 -10.87114 -10.55585 -10.21022 -10.10236 -9.83493 -9.49378 -8.81036 -8.46523 -7.99852 -7.85517 -6.72424 -3.85256 3.32316 3.36303 3.55489 3.86888 3.91798 4.32131 4.50970 4.72546 4.79686 4.97199 5.03287 5.20994 5.26542 5.32595 5.40106 5.47473 5.60574 5.70122 5.72175 5.83671 5.86569 6.02773 6.05940 6.07973 6.17878 6.20985 6.27093 6.39249 7.04719 7.24112 7.31232 7.39771 7.84899 8.11343 8.64519 8.85017 9.51748 9.93947 10.71279 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044591 B = 0.005297 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.776008 B = 5284.608615 C = 5563.695640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 H 0.037 0.963 4 C -0.102 4.102 5 C 0.087 3.913 6 H 0.079 0.921 7 N -0.846 5.846 8 C -0.148 4.148 9 C 0.061 3.939 10 N -0.507 5.507 11 C 0.038 3.962 12 C 0.448 3.552 13 O -0.569 6.569 14 N -0.580 5.580 15 C -0.380 4.380 16 H 0.098 0.902 17 C -0.011 4.011 18 N -0.904 5.904 19 Si 1.093 2.907 20 H -0.285 1.285 21 H -0.281 1.281 22 H -0.284 1.284 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.337 0.663 29 H 0.338 0.662 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.018 0.982 34 H 0.045 0.955 35 H 0.094 0.906 36 H 0.374 0.626 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.796 3.178 14.107 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 H 0.055 0.945 4 C -0.140 4.140 5 C -0.024 4.024 6 H 0.097 0.903 7 N -0.376 5.376 8 C -0.188 4.188 9 C -0.067 4.067 10 N -0.232 5.232 11 C -0.093 4.093 12 C 0.234 3.766 13 O -0.452 6.452 14 N -0.219 5.219 15 C -0.509 4.509 16 H 0.116 0.884 17 C -0.213 4.213 18 N -0.543 5.543 19 Si 0.920 3.080 20 H -0.212 1.212 21 H -0.207 1.207 22 H -0.210 1.210 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.112 0.888 36 H 0.207 0.793 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.286 1.743 13.356 13.864 hybrid contribution 0.801 1.453 0.482 1.727 sum 4.087 3.196 13.838 14.779 Atomic orbital electron populations 1.21946 0.94410 1.02994 1.01380 1.21626 0.95533 0.95144 0.90609 0.94476 1.21640 0.94052 1.01633 0.96656 1.21509 0.95463 0.88810 0.96667 0.90273 1.59067 1.12806 1.12335 1.53389 1.22340 0.99426 1.01845 0.95199 1.22066 0.87224 0.97437 0.99992 1.61478 1.06897 1.54499 1.00374 1.21980 1.01003 0.95597 0.90703 1.19727 0.84615 0.89009 0.83278 1.90511 1.47612 1.24273 1.82789 1.41960 1.54103 1.17087 1.08741 1.20548 1.40626 0.99842 0.89932 0.88390 1.26477 0.94831 1.00431 0.99520 1.70864 1.41919 1.06676 1.34877 0.83097 0.76869 0.73890 0.74189 1.21197 1.20668 1.20961 0.91344 0.92177 0.92500 0.90576 0.91036 0.85066 0.84821 0.90237 0.92019 0.89234 0.96397 0.93677 0.88836 0.79297 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.58 37.16 0.32 -1.52 16 2 C 0.08 1.05 2.21 -67.72 -0.15 0.90 16 3 H 0.04 0.48 6.64 -51.93 -0.34 0.13 16 4 C -0.10 -1.21 5.07 -26.65 -0.14 -1.34 16 5 C 0.09 0.99 3.72 -67.58 -0.25 0.74 16 6 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 7 N -0.85 -8.88 9.17 -4.56 -0.04 -8.92 16 8 C -0.15 -1.94 5.76 -26.65 -0.15 -2.10 16 9 C 0.06 0.96 4.87 -3.84 -0.02 0.94 16 10 N -0.51 -8.40 4.06 -228.13 -0.93 -9.33 16 11 C 0.04 0.69 5.31 -4.98 -0.03 0.67 16 12 C 0.45 10.73 7.49 -10.99 -0.08 10.65 16 13 O -0.57 -15.67 14.73 5.55 0.08 -15.58 16 14 N -0.58 -14.78 5.28 -10.96 -0.06 -14.84 16 15 C -0.38 -10.80 9.68 -14.93 -0.14 -10.94 16 16 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 17 C -0.01 -0.29 5.50 -17.47 -0.10 -0.38 16 18 N -0.90 -25.55 13.68 55.50 0.76 -24.79 16 19 Si 1.09 24.57 29.92 -169.99 -5.09 19.49 16 20 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 25 H 0.06 0.69 6.41 -51.93 -0.33 0.36 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.34 3.06 9.04 -39.29 -0.36 2.71 16 29 H 0.34 3.71 5.60 -39.29 -0.22 3.49 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.73 6.69 -51.93 -0.35 1.38 16 33 H 0.02 0.26 6.84 -51.93 -0.35 -0.10 16 34 H 0.05 0.75 8.00 -51.93 -0.42 0.34 16 35 H 0.09 1.54 5.43 -51.93 -0.28 1.25 16 36 H 0.37 8.83 6.73 -40.82 -0.27 8.55 16 37 H 0.26 7.09 6.77 -40.82 -0.28 6.82 16 LS Contribution 288.64 15.07 4.35 4.35 Total: -1.00 -31.88 288.64 -6.99 -38.87 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -5.33 Total: 13.16 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -0.74 Total: -2.41 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.27 Total: -57.87 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.08 Total: -15.58 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.09 Total: 19.49 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.88 -6.99 -38.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168939120.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.264 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds