Wall clock time and date at job start Mon Mar 30 2020 03:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.45207 * 2 1 4 4 C 1.53035 * 109.46160 * 119.97075 * 2 1 3 5 5 C 1.53127 * 109.27680 * 179.19688 * 4 2 1 6 6 H 1.09002 * 109.52241 * 182.44351 * 5 4 2 7 7 N 1.46898 * 109.52258 * 62.24914 * 5 4 2 8 8 C 1.53123 * 109.15851 * 302.34528 * 5 4 2 9 9 C 1.53031 * 109.27870 * 57.65405 * 8 5 4 10 10 N 1.46842 * 109.52438 * 300.81937 * 9 8 5 11 11 C 1.46906 * 110.99778 * 185.83764 * 10 9 8 12 12 C 1.50691 * 109.46901 * 75.50391 * 11 10 9 13 13 O 1.21293 * 120.00355 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00164 * 180.02562 * 12 11 10 15 15 C 1.37101 * 120.00259 * 179.97438 * 14 12 11 16 16 H 1.07998 * 120.00291 * 359.97438 * 15 14 12 17 17 C 1.38951 * 119.99586 * 179.97438 * 15 14 12 18 18 N 1.31406 * 120.00272 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99675 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46834 * 269.99891 * 19 17 15 21 21 H 1.48494 * 109.47139 * 149.99795 * 19 17 15 22 22 H 1.48503 * 109.46943 * 29.99561 * 19 17 15 23 23 H 1.09001 * 109.46947 * 171.86448 * 1 2 3 24 24 H 1.09004 * 109.47337 * 291.86087 * 1 2 3 25 25 H 1.08998 * 109.47219 * 51.86712 * 1 2 3 26 26 H 1.09004 * 109.50639 * 59.25979 * 4 2 1 27 27 H 1.08997 * 109.53888 * 299.15263 * 4 2 1 28 28 H 1.00898 * 110.99882 * 180.31421 * 7 5 4 29 29 H 1.00900 * 111.00255 * 304.27177 * 7 5 4 30 30 H 1.08997 * 109.50124 * 297.71454 * 8 5 4 31 31 H 1.09003 * 109.53102 * 177.61935 * 8 5 4 32 32 H 1.08997 * 109.46682 * 180.79942 * 9 8 5 33 33 H 1.09007 * 109.46432 * 60.83941 * 9 8 5 34 34 H 1.09000 * 109.47280 * 315.49753 * 11 10 9 35 35 H 1.09006 * 109.46616 * 195.49978 * 11 10 9 36 36 H 0.97010 * 119.99633 * 359.97438 * 14 12 11 37 37 H 0.96992 * 120.00533 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5710 -0.7359 1.2356 6 1 3.9380 -1.2862 2.1020 7 7 4.0759 0.6429 1.2781 8 6 4.0548 -1.4187 -0.0467 9 6 3.4864 -0.6777 -1.2590 10 7 2.0193 -0.6918 -1.1993 11 6 1.4373 -0.1106 -2.4166 12 6 1.5529 -1.0977 -3.5493 13 8 2.0696 -2.1788 -3.3613 14 7 1.0829 -0.7789 -4.7716 15 6 1.1885 -1.6768 -5.8023 16 1 1.6487 -2.6394 -5.6350 17 6 0.7035 -1.3482 -7.0623 18 7 0.1432 -0.1771 -7.2658 19 14 0.8481 -2.5712 -8.4669 20 1 2.1336 -2.3576 -9.1789 21 1 -0.2801 -2.3749 -9.4123 22 1 0.8057 -3.9536 -7.9258 23 1 -0.3633 -1.0173 -0.1454 24 1 -0.3634 0.3827 0.9538 25 1 -0.3633 0.6346 -0.8083 26 1 1.6659 -1.7447 1.2577 27 1 1.6895 -0.1987 2.1403 28 1 5.0847 0.6591 1.2644 29 1 3.6951 1.1910 0.5214 30 1 3.7125 -2.4535 -0.0594 31 1 5.1439 -1.3952 -0.0835 32 1 3.8174 -1.1698 -2.1735 33 1 3.8403 0.3533 -1.2533 34 1 1.9726 0.8031 -2.6748 35 1 0.3865 0.1208 -2.2421 36 1 0.6700 0.0859 -4.9221 37 1 0.0685 0.4581 -6.5367 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168939120.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:47 Heat of formation + Delta-G solvation = -59.820706 kcal Electronic energy + Delta-G solvation = -18090.114358 eV Core-core repulsion = 15286.873169 eV Total energy + Delta-G solvation = -2803.241190 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.09330 -39.72617 -36.48182 -35.79305 -33.36540 -33.13171 -30.99389 -28.49589 -27.92258 -26.16824 -24.13485 -22.46583 -21.33312 -20.04418 -19.91094 -18.12086 -17.33689 -16.93580 -16.65362 -16.15641 -15.74042 -15.54608 -15.46756 -15.26636 -14.82745 -14.07707 -13.91144 -13.36642 -13.16318 -12.98648 -12.96044 -12.77180 -12.71684 -12.31358 -11.95037 -11.94513 -11.88396 -11.69881 -11.47642 -11.13627 -10.38437 -10.09599 -9.66495 -9.18283 -8.92752 -6.06309 1.51413 1.54020 1.81180 2.02069 2.37460 2.64503 3.15936 3.24707 3.63798 3.71722 3.84636 3.96205 4.02665 4.19457 4.26884 4.29067 4.39363 4.40288 4.42467 4.75911 4.80983 4.83799 4.92251 5.03539 5.12634 5.16921 5.23631 5.36777 5.59806 5.93950 6.00163 6.18861 6.23575 6.52926 6.59045 6.76620 7.45280 7.95420 8.55089 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044591 B = 0.005297 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.776008 B = 5284.608615 C = 5563.695640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 H 0.051 0.949 4 C -0.099 4.099 5 C 0.095 3.905 6 H 0.093 0.907 7 N -0.841 5.841 8 C -0.142 4.142 9 C 0.062 3.938 10 N -0.527 5.527 11 C 0.051 3.949 12 C 0.446 3.554 13 O -0.610 6.610 14 N -0.590 5.590 15 C -0.408 4.408 16 H 0.070 0.930 17 C -0.042 4.042 18 N -0.918 5.918 19 Si 1.136 2.864 20 H -0.271 1.271 21 H -0.272 1.272 22 H -0.279 1.279 23 H 0.049 0.951 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.347 0.653 29 H 0.336 0.664 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.383 0.617 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.844 4.280 15.363 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 H 0.069 0.931 4 C -0.138 4.138 5 C -0.017 4.017 6 H 0.111 0.889 7 N -0.372 5.372 8 C -0.182 4.182 9 C -0.066 4.066 10 N -0.253 5.253 11 C -0.080 4.080 12 C 0.234 3.766 13 O -0.494 6.494 14 N -0.230 5.230 15 C -0.537 4.537 16 H 0.089 0.911 17 C -0.240 4.240 18 N -0.557 5.557 19 Si 0.956 3.044 20 H -0.196 1.196 21 H -0.197 1.197 22 H -0.204 1.204 23 H 0.068 0.932 24 H 0.104 0.896 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.160 0.840 29 H 0.150 0.850 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.132 0.868 36 H 0.217 0.783 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.339 2.883 14.645 15.295 hybrid contribution 0.812 1.116 0.175 1.391 sum 4.150 3.999 14.820 15.901 Atomic orbital electron populations 1.21954 0.93717 1.02042 1.02906 1.21745 0.96095 0.95571 0.89361 0.93148 1.21646 0.94393 1.01124 0.96592 1.21447 0.95159 0.89255 0.95807 0.88891 1.59067 1.13642 1.11395 1.53091 1.22318 1.00206 1.00426 0.95248 1.21985 0.87130 0.98273 0.99177 1.61434 1.07331 1.55711 1.00850 1.21837 1.02781 0.94132 0.89256 1.20849 0.82402 0.89403 0.83975 1.90483 1.48855 1.26501 1.83595 1.42014 1.54873 1.17167 1.08978 1.20514 1.41930 0.99763 0.91542 0.91145 1.27798 0.93582 1.01275 1.01356 1.70935 1.42627 1.07151 1.35028 0.82595 0.77746 0.72189 0.71913 1.19603 1.19659 1.20417 0.93163 0.89590 0.92393 0.91635 0.89179 0.83982 0.85003 0.92393 0.90549 0.93695 0.94551 0.91719 0.86820 0.78293 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.58 71.98 0.62 -2.70 16 2 C 0.08 1.92 2.21 44.94 0.10 2.02 16 3 H 0.05 1.12 6.64 -2.39 -0.02 1.10 16 4 C -0.10 -2.12 5.07 30.65 0.16 -1.96 16 5 C 0.10 1.92 3.72 45.00 0.17 2.09 16 6 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 7 N -0.84 -15.02 9.17 -168.33 -1.54 -16.57 16 8 C -0.14 -3.59 5.76 30.65 0.18 -3.42 16 9 C 0.06 1.94 4.87 86.32 0.42 2.36 16 10 N -0.53 -17.05 4.06 -875.67 -3.55 -20.60 16 11 C 0.05 1.80 5.31 85.55 0.45 2.26 16 12 C 0.45 21.78 7.49 87.65 0.66 22.43 16 13 O -0.61 -34.80 14.73 -3.07 -0.05 -34.84 16 14 N -0.59 -30.69 5.28 -306.99 -1.62 -32.31 16 15 C -0.41 -23.78 9.68 84.04 0.81 -22.97 16 16 H 0.07 4.43 7.16 -2.91 -0.02 4.41 16 17 C -0.04 -2.32 5.50 84.93 0.47 -1.85 16 18 N -0.92 -51.76 13.68 21.66 0.30 -51.47 16 19 Si 1.14 49.30 29.92 68.60 2.05 51.36 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.09 1.47 8.13 -2.38 -0.02 1.45 16 25 H 0.06 1.26 6.41 -2.39 -0.02 1.25 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.35 5.23 9.04 -89.70 -0.81 4.42 16 29 H 0.34 6.30 5.60 -89.69 -0.50 5.80 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.79 6.69 -2.39 -0.02 1.78 16 33 H 0.04 0.98 6.84 -2.38 -0.02 0.97 16 34 H 0.06 2.05 8.00 -2.39 -0.02 2.03 16 35 H 0.11 3.56 5.43 -2.38 -0.01 3.55 16 36 H 0.38 18.27 6.73 -92.70 -0.62 17.65 16 37 H 0.26 14.13 6.77 -92.71 -0.63 13.50 16 Total: -1.00 -69.78 288.64 -1.08 -70.86 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.70 Total: 35.30 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 4.03 Total: -1.73 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -6.42 Total: -120.94 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.05 Total: -34.84 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 2.05 Total: 51.36 kcal Total: -69.78 -1.08 -70.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168939120.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.039 kcal (2) G-P(sol) polarization free energy of solvation -69.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds