Wall clock time and date at job start Mon Mar 30 2020 03:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47214 * 2 1 4 4 C 1.50696 * 109.47197 * 120.00188 * 2 1 3 5 5 H 1.08003 * 120.00556 * 116.77040 * 4 2 1 6 6 C 1.37879 * 119.99947 * 296.77117 * 4 2 1 7 7 N 1.31513 * 119.99834 * 352.56792 * 6 4 2 8 8 Si 1.86800 * 120.00223 * 172.28809 * 6 4 2 9 9 H 1.48499 * 109.47323 * 265.35757 * 8 6 4 10 10 H 1.48511 * 109.47009 * 25.36016 * 8 6 4 11 11 H 1.48501 * 109.47358 * 145.35371 * 8 6 4 12 12 N 1.46898 * 109.46952 * 239.99780 * 2 1 3 13 13 C 1.46269 * 110.99820 * 60.00283 * 12 2 1 14 14 C 1.47538 * 114.37345 * 148.55053 * 13 12 2 15 15 C 1.54943 * 109.73588 * 62.21959 * 14 13 12 16 16 N 1.44678 * 109.52618 * 290.52318 * 15 14 13 17 17 C 1.34778 * 118.54688 * 269.05564 * 16 15 14 18 18 N 1.34782 * 120.00007 * 359.97438 * 17 16 15 19 19 O 1.21583 * 120.00413 * 179.97438 * 17 16 15 20 20 C 1.47777 * 122.90821 * 89.07062 * 16 15 14 21 21 C 1.44757 * 111.00364 * 296.50860 * 12 2 1 22 22 H 1.09007 * 109.47085 * 297.64624 * 1 2 3 23 23 H 1.09001 * 109.47404 * 57.64554 * 1 2 3 24 24 H 1.08998 * 109.47470 * 177.64541 * 1 2 3 25 25 H 0.97004 * 119.99883 * 179.72482 * 7 6 4 26 26 H 1.08998 * 108.49984 * 269.81467 * 13 12 2 27 27 H 1.09002 * 108.50402 * 27.28139 * 13 12 2 28 28 H 1.09003 * 109.42972 * 182.29822 * 14 13 12 29 29 H 1.08999 * 109.43141 * 302.19195 * 14 13 12 30 30 H 1.08999 * 109.46282 * 50.53862 * 15 14 13 31 31 H 1.09003 * 109.46597 * 170.51468 * 15 14 13 32 32 H 0.97005 * 119.99533 * 359.97438 * 18 17 16 33 33 H 0.96994 * 120.00317 * 180.02562 * 18 17 16 34 34 H 1.09006 * 109.05904 * 78.65179 * 20 16 15 35 35 H 1.08996 * 109.06398 * 197.57937 * 20 16 15 36 36 H 1.08999 * 109.43514 * 337.92626 * 21 12 2 37 37 H 1.09004 * 109.43481 * 97.79541 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6095 -1.6180 1.1322 6 6 1.7550 -0.2018 2.4816 7 7 1.1810 0.9754 2.6004 8 14 2.1876 -1.1883 4.0078 9 1 1.0030 -1.9703 4.4440 10 1 3.3058 -2.1151 3.6976 11 1 2.5982 -0.2638 5.0949 12 7 2.0196 -0.6925 -1.1994 13 6 1.5506 -0.0292 -2.4158 14 6 2.4783 -0.1268 -3.5588 15 6 2.6646 -1.6129 -3.9561 16 7 3.4091 -2.2998 -2.9232 17 6 4.7524 -2.3487 -3.0218 18 7 5.3731 -1.7657 -4.0664 19 8 5.4043 -2.9188 -2.1683 20 6 2.7619 -2.9506 -1.7650 21 6 1.6238 -2.0849 -1.1924 22 1 -0.3633 0.4769 0.9104 23 1 -0.3634 0.5500 -0.8681 24 1 -0.3634 -1.0268 -0.0422 25 1 0.9823 1.3315 3.4806 26 1 0.5973 -0.4714 -2.7052 27 1 1.3855 1.0250 -2.1933 28 1 2.0705 0.4262 -4.4050 29 1 3.4431 0.2967 -3.2800 30 1 1.6881 -2.0826 -4.0733 31 1 3.2111 -1.6714 -4.8974 32 1 4.8529 -1.3112 -4.7475 33 1 6.3398 -1.8011 -4.1376 34 1 2.3548 -3.9120 -2.0785 35 1 3.5077 -3.1176 -0.9878 36 1 1.4105 -2.3963 -0.1699 37 1 0.7298 -2.2110 -1.8032 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170806926.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:52 Heat of formation + Delta-G solvation = -12.394183 kcal Electronic energy + Delta-G solvation = -18698.898985 eV Core-core repulsion = 15897.714364 eV Total energy + Delta-G solvation = -2801.184621 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.04969 -37.96651 -35.23068 -33.38923 -32.83555 -31.91555 -29.36348 -26.76525 -25.66711 -24.94476 -22.29501 -21.48226 -19.48227 -18.79737 -18.02430 -16.84959 -16.10143 -15.48096 -15.16802 -14.75474 -14.33797 -13.91256 -13.79412 -13.25417 -12.91732 -12.78734 -12.39974 -11.90471 -11.45436 -11.32299 -11.12104 -10.94283 -10.71916 -10.63347 -10.52695 -10.26463 -10.02696 -9.72373 -9.66411 -9.39979 -8.89743 -8.35228 -8.13427 -7.17801 -6.02850 -4.03148 3.18431 3.32973 3.40434 3.46342 3.63221 4.38357 4.44930 4.90215 5.01847 5.18070 5.31052 5.48681 5.65356 5.74727 5.83901 5.97384 6.06165 6.18001 6.36047 6.49537 6.55989 6.61930 6.69862 6.77983 6.88398 7.07526 7.11596 7.21462 7.48195 7.62958 7.86004 8.14060 8.22400 8.38966 8.62139 8.98844 9.03309 9.61128 11.06433 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027594 B = 0.007926 C = 0.006789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.472439 B = 3532.031008 C = 4123.470266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.213 3.787 3 H 0.043 0.957 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.287 1.287 12 N -0.522 5.522 13 C 0.059 3.941 14 C -0.135 4.135 15 C 0.117 3.883 16 N -0.602 5.602 17 C 0.705 3.295 18 N -0.874 5.874 19 O -0.598 6.598 20 C 0.137 3.863 21 C 0.048 3.952 22 H 0.074 0.926 23 H 0.010 0.990 24 H 0.028 0.972 25 H 0.260 0.740 26 H 0.022 0.978 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.393 0.607 33 H 0.407 0.593 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 -3.366 -14.600 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.107 3.893 3 H 0.061 0.939 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.196 1.196 11 H -0.213 1.213 12 N -0.245 5.245 13 C -0.070 4.070 14 C -0.175 4.175 15 C -0.008 4.008 16 N -0.338 5.338 17 C 0.405 3.595 18 N -0.443 5.443 19 O -0.476 6.476 20 C 0.014 3.986 21 C -0.082 4.082 22 H 0.093 0.907 23 H 0.029 0.971 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.223 0.777 33 H 0.238 0.762 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.269 -3.639 -13.780 14.309 hybrid contribution -0.683 -0.042 0.443 0.815 sum 0.585 -3.681 -13.338 13.849 Atomic orbital electron populations 1.22392 1.01075 0.98697 1.00317 1.19399 0.89218 0.94944 0.85780 0.93895 1.21138 1.33383 1.10028 0.89708 0.91686 1.24912 0.95363 0.94737 0.98993 1.69956 1.43212 1.16417 1.23565 0.86571 0.78688 0.80081 0.82703 1.20829 1.19610 1.21347 1.61118 1.60210 1.01130 1.02053 1.20831 0.95019 0.99532 0.91584 1.21522 1.01765 0.96070 0.98134 1.21458 0.96955 0.92939 0.89465 1.46728 1.04041 1.57643 1.25427 1.15957 0.82392 0.79362 0.81783 1.43174 1.11027 1.62714 1.27390 1.90924 1.64795 1.50131 1.41761 1.21958 0.96546 0.93019 0.87116 1.22330 0.93429 0.90418 1.02014 0.90688 0.97055 0.95302 0.93035 0.95949 0.92295 0.91335 0.91125 0.90909 0.91672 0.77731 0.76163 0.93235 0.88995 0.88128 0.95877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 8.52 37.16 0.32 -3.51 16 2 C 0.21 5.23 2.09 -68.87 -0.14 5.09 16 3 H 0.04 1.20 8.03 -51.93 -0.42 0.78 16 4 C -0.50 -13.70 7.44 -34.44 -0.26 -13.95 16 5 H 0.07 1.80 6.83 -52.48 -0.36 1.44 16 6 C 0.06 1.70 5.21 -17.82 -0.09 1.61 16 7 N -0.89 -25.52 11.90 55.43 0.66 -24.86 16 8 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 N -0.52 -10.82 4.19 -232.99 -0.98 -11.79 16 13 C 0.06 1.00 3.75 -6.80 -0.03 0.98 16 14 C -0.14 -1.78 6.02 -28.34 -0.17 -1.95 16 15 C 0.12 1.40 5.22 -3.99 -0.02 1.38 16 16 N -0.60 -9.52 2.54 -177.94 -0.45 -9.97 16 17 C 0.71 12.03 8.50 -86.91 -0.74 11.29 16 18 N -0.87 -10.25 8.71 27.64 0.24 -10.01 16 19 O -0.60 -13.01 16.46 5.29 0.09 -12.92 16 20 C 0.14 2.40 6.46 -2.81 -0.02 2.38 16 21 C 0.05 0.90 3.88 -4.44 -0.02 0.89 16 22 H 0.07 1.93 6.58 -51.93 -0.34 1.59 16 23 H 0.01 0.22 7.09 -51.93 -0.37 -0.15 16 24 H 0.03 0.63 7.09 -51.93 -0.37 0.26 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.02 0.36 7.09 -51.93 -0.37 0.00 16 27 H 0.06 1.06 7.39 -51.93 -0.38 0.68 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 31 H 0.07 0.58 6.13 -51.93 -0.32 0.26 16 32 H 0.39 3.45 6.40 -40.82 -0.26 3.19 16 33 H 0.41 4.20 8.93 -40.82 -0.36 3.83 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.90 6.96 -51.93 -0.36 1.53 16 36 H 0.10 2.12 5.68 -51.93 -0.29 1.83 16 37 H 0.02 0.40 7.14 -51.93 -0.37 0.03 16 LS Contribution 283.91 15.07 4.28 4.28 Total: -1.00 -32.16 283.91 -7.75 -39.91 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.40 Total: 4.61 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -1.17 Total: 4.19 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.53 Total: -56.63 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.16 -7.75 -39.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806926.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.518 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds