Wall clock time and date at job start Mon Mar 30 2020 03:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47214 * 2 1 4 4 C 1.50696 * 109.47197 * 120.00188 * 2 1 3 5 5 H 1.08003 * 120.00556 * 116.77040 * 4 2 1 6 6 C 1.37879 * 119.99947 * 296.77117 * 4 2 1 7 7 N 1.31513 * 119.99834 * 352.56792 * 6 4 2 8 8 Si 1.86800 * 120.00223 * 172.28809 * 6 4 2 9 9 H 1.48499 * 109.47323 * 265.35757 * 8 6 4 10 10 H 1.48511 * 109.47009 * 25.36016 * 8 6 4 11 11 H 1.48501 * 109.47358 * 145.35371 * 8 6 4 12 12 N 1.46898 * 109.46952 * 239.99780 * 2 1 3 13 13 C 1.46269 * 110.99820 * 60.00283 * 12 2 1 14 14 C 1.47538 * 114.37345 * 148.55053 * 13 12 2 15 15 C 1.54943 * 109.73588 * 62.21959 * 14 13 12 16 16 N 1.44678 * 109.52618 * 290.52318 * 15 14 13 17 17 C 1.34778 * 118.54688 * 269.05564 * 16 15 14 18 18 N 1.34782 * 120.00007 * 359.97438 * 17 16 15 19 19 O 1.21583 * 120.00413 * 179.97438 * 17 16 15 20 20 C 1.47777 * 122.90821 * 89.07062 * 16 15 14 21 21 C 1.44757 * 111.00364 * 296.50860 * 12 2 1 22 22 H 1.09007 * 109.47085 * 297.64624 * 1 2 3 23 23 H 1.09001 * 109.47404 * 57.64554 * 1 2 3 24 24 H 1.08998 * 109.47470 * 177.64541 * 1 2 3 25 25 H 0.97004 * 119.99883 * 179.72482 * 7 6 4 26 26 H 1.08998 * 108.49984 * 269.81467 * 13 12 2 27 27 H 1.09002 * 108.50402 * 27.28139 * 13 12 2 28 28 H 1.09003 * 109.42972 * 182.29822 * 14 13 12 29 29 H 1.08999 * 109.43141 * 302.19195 * 14 13 12 30 30 H 1.08999 * 109.46282 * 50.53862 * 15 14 13 31 31 H 1.09003 * 109.46597 * 170.51468 * 15 14 13 32 32 H 0.97005 * 119.99533 * 359.97438 * 18 17 16 33 33 H 0.96994 * 120.00317 * 180.02562 * 18 17 16 34 34 H 1.09006 * 109.05904 * 78.65179 * 20 16 15 35 35 H 1.08996 * 109.06398 * 197.57937 * 20 16 15 36 36 H 1.08999 * 109.43514 * 337.92626 * 21 12 2 37 37 H 1.09004 * 109.43481 * 97.79541 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6095 -1.6180 1.1322 6 6 1.7550 -0.2018 2.4816 7 7 1.1810 0.9754 2.6004 8 14 2.1876 -1.1883 4.0078 9 1 1.0030 -1.9703 4.4440 10 1 3.3058 -2.1151 3.6976 11 1 2.5982 -0.2638 5.0949 12 7 2.0196 -0.6925 -1.1994 13 6 1.5506 -0.0292 -2.4158 14 6 2.4783 -0.1268 -3.5588 15 6 2.6646 -1.6129 -3.9561 16 7 3.4091 -2.2998 -2.9232 17 6 4.7524 -2.3487 -3.0218 18 7 5.3731 -1.7657 -4.0664 19 8 5.4043 -2.9188 -2.1683 20 6 2.7619 -2.9506 -1.7650 21 6 1.6238 -2.0849 -1.1924 22 1 -0.3633 0.4769 0.9104 23 1 -0.3634 0.5500 -0.8681 24 1 -0.3634 -1.0268 -0.0422 25 1 0.9823 1.3315 3.4806 26 1 0.5973 -0.4714 -2.7052 27 1 1.3855 1.0250 -2.1933 28 1 2.0705 0.4262 -4.4050 29 1 3.4431 0.2967 -3.2800 30 1 1.6881 -2.0826 -4.0733 31 1 3.2111 -1.6714 -4.8974 32 1 4.8529 -1.3112 -4.7475 33 1 6.3398 -1.8011 -4.1376 34 1 2.3548 -3.9120 -2.0785 35 1 3.5077 -3.1176 -0.9878 36 1 1.4105 -2.3963 -0.1699 37 1 0.7298 -2.2110 -1.8032 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170806926.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:52 Heat of formation + Delta-G solvation = -37.483557 kcal Electronic energy + Delta-G solvation = -18699.986942 eV Core-core repulsion = 15897.714364 eV Total energy + Delta-G solvation = -2802.272578 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.34142 -39.49538 -36.71067 -34.86024 -34.36752 -33.36096 -31.09748 -28.24846 -27.39491 -26.55058 -23.74615 -23.01616 -20.81614 -20.32608 -19.18718 -18.25908 -17.90381 -17.14326 -16.46993 -16.22619 -15.96711 -15.39963 -15.26835 -14.76629 -14.33495 -14.17896 -13.77318 -13.71516 -13.03652 -12.97730 -12.76759 -12.66597 -12.34046 -12.31752 -12.16905 -12.06041 -11.53062 -11.34588 -11.13543 -10.90601 -10.57558 -10.47720 -9.36706 -8.78981 -8.15561 -6.21481 1.38590 1.40809 1.51673 1.98038 2.35327 2.41761 3.15669 3.29222 3.52392 3.97737 4.15360 4.24104 4.31807 4.46346 4.64147 4.72094 4.79459 4.86214 4.89375 4.90585 5.01737 5.07074 5.14549 5.20641 5.46978 5.53062 5.71650 5.72119 5.77502 6.01006 6.13414 6.20265 6.56749 6.86450 6.95572 7.12163 7.46720 7.77803 8.93197 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027594 B = 0.007926 C = 0.006789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.472439 B = 3532.031008 C = 4123.470266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.219 3.781 3 H 0.002 0.998 4 C -0.515 4.515 5 H 0.052 0.948 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.950 3.050 9 H -0.271 1.271 10 H -0.275 1.275 11 H -0.285 1.285 12 N -0.538 5.538 13 C 0.056 3.944 14 C -0.129 4.129 15 C 0.113 3.887 16 N -0.603 5.603 17 C 0.695 3.305 18 N -0.848 5.848 19 O -0.654 6.654 20 C 0.143 3.857 21 C 0.055 3.945 22 H 0.044 0.956 23 H 0.032 0.968 24 H 0.036 0.964 25 H 0.261 0.739 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.110 0.890 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.411 0.589 33 H 0.416 0.584 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.057 -3.944 -17.003 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.112 3.888 3 H 0.020 0.980 4 C -0.553 4.553 5 H 0.071 0.929 6 C -0.183 4.183 7 N -0.559 5.559 8 Si 0.776 3.224 9 H -0.197 1.197 10 H -0.200 1.200 11 H -0.211 1.211 12 N -0.261 5.261 13 C -0.072 4.072 14 C -0.168 4.168 15 C -0.011 4.011 16 N -0.339 5.339 17 C 0.395 3.605 18 N -0.419 5.419 19 O -0.537 6.537 20 C 0.019 3.981 21 C -0.075 4.075 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.129 0.871 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.244 0.756 33 H 0.249 0.751 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.724 -4.190 -16.256 16.803 hybrid contribution -0.516 0.177 1.113 1.239 sum 0.208 -4.013 -15.144 15.668 Atomic orbital electron populations 1.22157 0.99861 0.99092 0.99711 1.19084 0.89946 0.92783 0.86967 0.98021 1.21383 1.33076 1.09662 0.91197 0.92947 1.25609 0.95516 0.95565 1.01629 1.70061 1.44210 1.17545 1.24114 0.85666 0.78520 0.78726 0.79498 1.19665 1.20029 1.21056 1.61045 1.60864 1.02030 1.02167 1.20993 0.96889 0.98176 0.91145 1.21498 1.00011 0.97552 0.97772 1.21767 0.98109 0.91530 0.89659 1.46770 1.03969 1.57656 1.25462 1.16268 0.82711 0.79371 0.82191 1.42886 1.11604 1.61242 1.26156 1.90888 1.66076 1.52621 1.44128 1.21736 0.94987 0.94193 0.87197 1.22233 0.94912 0.89344 1.00991 0.93706 0.94862 0.94454 0.92989 0.94434 0.93992 0.87138 0.92969 0.89205 0.87609 0.75588 0.75143 0.90355 0.93025 0.91026 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.90 8.52 71.98 0.61 -6.28 16 2 C 0.22 11.05 2.09 44.17 0.09 11.15 16 3 H 0.00 0.11 8.03 -2.39 -0.02 0.09 16 4 C -0.51 -28.82 7.44 25.60 0.19 -28.63 16 5 H 0.05 3.01 6.83 -2.91 -0.02 2.99 16 6 C 0.02 0.88 5.21 84.66 0.44 1.33 16 7 N -0.92 -53.85 11.90 21.45 0.26 -53.59 16 8 Si 0.95 45.16 29.54 68.60 2.03 47.19 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 N -0.54 -22.17 4.19 -891.05 -3.73 -25.90 16 13 C 0.06 1.78 3.75 84.72 0.32 2.10 16 14 C -0.13 -2.93 6.02 29.55 0.18 -2.76 16 15 C 0.11 2.21 5.22 87.38 0.46 2.66 16 16 N -0.60 -17.77 2.54 -835.16 -2.12 -19.88 16 17 C 0.70 22.77 8.50 179.05 1.52 24.29 16 18 N -0.85 -17.64 8.71 -184.74 -1.61 -19.25 16 19 O -0.65 -28.79 16.46 -3.98 -0.07 -28.85 16 20 C 0.14 4.90 6.46 86.48 0.56 5.46 16 21 C 0.05 2.02 3.88 87.05 0.34 2.36 16 22 H 0.04 2.34 6.58 -2.38 -0.02 2.32 16 23 H 0.03 1.35 7.09 -2.39 -0.02 1.33 16 24 H 0.04 1.62 7.09 -2.39 -0.02 1.60 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.04 1.09 7.09 -2.39 -0.02 1.07 16 27 H 0.04 1.46 7.39 -2.39 -0.02 1.45 16 28 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 31 H 0.11 1.26 6.13 -2.39 -0.01 1.25 16 32 H 0.41 5.51 6.40 -92.70 -0.59 4.92 16 33 H 0.42 7.62 8.93 -92.71 -0.83 6.80 16 34 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.05 2.19 6.96 -2.39 -0.02 2.18 16 36 H 0.07 3.06 5.68 -2.39 -0.01 3.05 16 37 H 0.05 1.52 7.14 -2.38 -0.02 1.50 16 Total: -1.00 -73.37 283.91 -0.87 -74.23 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -0.33 Total: 14.38 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 4.71 Total: 11.68 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -7.20 Total: -118.62 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.07 Total: -28.85 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -73.37 -0.87 -74.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806926.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.749 kcal (2) G-P(sol) polarization free energy of solvation -73.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds