Wall clock time and date at job start Mon Mar 30 2020 03:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46683 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47426 * 119.99743 * 8 6 4 11 11 H 1.48501 * 109.46833 * 239.99986 * 8 6 4 12 12 N 1.46895 * 109.47514 * 120.00767 * 2 1 3 13 13 C 1.46269 * 111.00030 * 294.99938 * 12 2 1 14 14 C 1.47539 * 114.37459 * 148.55187 * 13 12 2 15 15 C 1.54946 * 109.73351 * 62.22213 * 14 13 12 16 16 N 1.44677 * 109.52191 * 290.51915 * 15 14 13 17 17 C 1.34777 * 118.54497 * 269.05541 * 16 15 14 18 18 N 1.34771 * 120.00318 * 0.02562 * 17 16 15 19 19 O 1.21595 * 119.99620 * 179.97438 * 17 16 15 20 20 C 1.47776 * 122.90270 * 89.07854 * 16 15 14 21 21 C 1.44765 * 111.00259 * 171.51034 * 12 2 1 22 22 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 23 23 H 1.08996 * 109.47350 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 25 25 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 26 26 H 1.09004 * 108.50309 * 269.82147 * 13 12 2 27 27 H 1.09002 * 108.49650 * 27.28342 * 13 12 2 28 28 H 1.09007 * 109.42623 * 182.30037 * 14 13 12 29 29 H 1.09002 * 109.42866 * 302.19219 * 14 13 12 30 30 H 1.08997 * 109.46165 * 50.53461 * 15 14 13 31 31 H 1.09000 * 109.45880 * 170.51475 * 15 14 13 32 32 H 0.96996 * 120.00065 * 0.02562 * 18 17 16 33 33 H 0.97002 * 119.99976 * 180.02562 * 18 17 16 34 34 H 1.09011 * 109.06100 * 78.64800 * 20 16 15 35 35 H 1.09003 * 109.06369 * 197.57227 * 20 16 15 36 36 H 1.09006 * 109.43294 * 337.92170 * 21 12 2 37 37 H 1.08992 * 109.43786 * 97.79230 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 3.1471 -2.2860 -3.6041 10 1 1.1613 -1.5953 -4.8129 11 1 3.1362 -0.1881 -4.8200 12 7 2.0197 -0.6926 1.1993 13 6 1.6504 0.0357 2.4128 14 6 1.4181 -0.8218 3.5907 15 6 2.7220 -1.5759 3.9541 16 7 3.0108 -2.5611 2.9347 17 6 2.5241 -3.8086 3.0884 18 7 1.7858 -4.1150 4.1735 19 8 2.7504 -4.6572 2.2475 20 6 3.8162 -2.2603 1.7328 21 6 3.4529 -0.8872 1.1372 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 0.6955 1.1524 -3.4842 26 1 2.4478 0.7402 2.6496 27 1 0.7411 0.6025 2.2127 28 1 1.1097 -0.2037 4.4340 29 1 0.6336 -1.5439 3.3644 30 1 3.5466 -0.8660 4.0170 31 1 2.5974 -2.0741 4.9156 32 1 1.6044 -3.4377 4.8437 33 1 1.4359 -5.0129 4.2842 34 1 4.8725 -2.2633 2.0022 35 1 3.6391 -3.0317 0.9833 36 1 3.7800 -0.8444 0.0982 37 1 3.9505 -0.1019 1.7061 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170806929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:54 Heat of formation + Delta-G solvation = -9.022760 kcal Electronic energy + Delta-G solvation = -18698.689302 eV Core-core repulsion = 15897.650876 eV Total energy + Delta-G solvation = -2801.038425 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.02911 -37.84711 -35.15527 -33.42150 -32.84704 -31.91932 -29.58647 -26.66948 -26.00563 -24.72717 -21.99935 -21.15579 -19.47322 -19.07708 -18.02392 -16.80079 -16.22100 -15.60566 -15.13448 -14.70874 -14.33313 -13.99455 -13.69499 -13.26339 -12.82158 -12.79060 -12.40187 -12.13494 -11.53414 -11.21795 -11.06650 -10.95443 -10.59681 -10.42788 -10.26712 -10.16931 -9.96440 -9.73953 -9.67747 -9.40195 -8.84983 -8.42966 -8.12628 -7.16316 -6.01892 -4.06100 3.18743 3.31405 3.39751 3.45893 3.63214 4.38047 4.43408 4.90202 5.02388 5.18927 5.30192 5.49081 5.66446 5.75719 5.84049 5.98116 6.07599 6.18877 6.35198 6.50742 6.59472 6.66366 6.85068 6.89488 7.07773 7.10506 7.16871 7.23288 7.54033 7.78770 7.83753 8.22345 8.24500 8.35565 8.62209 8.98647 9.01757 9.59277 11.04684 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028035 B = 0.007860 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.515037 B = 3561.326366 C = 4066.386291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.214 3.786 3 H -0.003 1.003 4 C -0.506 4.506 5 H 0.066 0.934 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.524 5.524 13 C 0.052 3.948 14 C -0.134 4.134 15 C 0.117 3.883 16 N -0.602 5.602 17 C 0.705 3.295 18 N -0.874 5.874 19 O -0.598 6.598 20 C 0.138 3.862 21 C 0.044 3.956 22 H 0.085 0.915 23 H 0.033 0.967 24 H 0.006 0.994 25 H 0.260 0.740 26 H 0.020 0.980 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.393 0.607 33 H 0.407 0.593 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 -2.141 14.380 14.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.108 3.892 3 H 0.015 0.985 4 C -0.544 4.544 5 H 0.084 0.916 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.248 5.248 13 C -0.077 4.077 14 C -0.173 4.173 15 C -0.008 4.008 16 N -0.338 5.338 17 C 0.405 3.595 18 N -0.443 5.443 19 O -0.477 6.477 20 C 0.015 3.985 21 C -0.086 4.086 22 H 0.103 0.897 23 H 0.052 0.948 24 H 0.025 0.975 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.223 0.777 33 H 0.238 0.762 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.351 -2.876 13.573 14.072 hybrid contribution 0.223 0.475 -0.412 0.668 sum 2.574 -2.400 13.161 13.624 Atomic orbital electron populations 1.21833 0.97777 0.99585 0.99632 1.19286 0.92363 0.91855 0.85652 0.98516 1.21226 1.31003 1.12387 0.89783 0.91566 1.24921 0.95103 0.95030 0.99064 1.69902 1.36624 1.23313 1.23338 0.86481 0.78687 0.79707 0.82856 1.19528 1.21044 1.21162 1.60950 1.11351 1.50212 1.02306 1.20939 1.00558 0.94644 0.91537 1.21495 0.97958 0.99883 0.97966 1.21463 0.97918 0.91698 0.89752 1.46733 1.55224 1.08302 1.23550 1.15959 0.78542 0.83184 0.81818 1.43171 1.59251 1.16648 1.25232 1.90925 1.64744 1.48382 1.43624 1.21943 0.91377 0.99378 0.85823 1.22410 0.89828 0.93815 1.02580 0.89678 0.94816 0.97467 0.93046 0.96208 0.91577 0.91387 0.91163 0.90903 0.91698 0.77730 0.76175 0.93222 0.89042 0.87652 0.95940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.93 37.16 0.33 -2.87 16 2 C 0.21 5.33 2.00 -68.87 -0.14 5.19 16 3 H 0.00 -0.07 8.13 -51.93 -0.42 -0.50 16 4 C -0.51 -13.74 7.40 -34.44 -0.25 -14.00 16 5 H 0.07 1.82 6.59 -52.49 -0.35 1.47 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.37 11.30 55.43 0.63 -24.74 16 8 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.52 -10.97 4.02 -232.98 -0.94 -11.91 16 13 C 0.05 0.89 4.75 -6.80 -0.03 0.86 16 14 C -0.13 -1.78 6.02 -28.34 -0.17 -1.95 16 15 C 0.12 1.42 5.22 -3.99 -0.02 1.39 16 16 N -0.60 -9.57 2.53 -177.94 -0.45 -10.02 16 17 C 0.71 12.06 8.50 -86.92 -0.74 11.33 16 18 N -0.87 -10.30 8.71 27.63 0.24 -10.06 16 19 O -0.60 -13.03 16.46 5.28 0.09 -12.95 16 20 C 0.14 2.43 6.46 -2.81 -0.02 2.42 16 21 C 0.04 0.83 5.05 -4.44 -0.02 0.81 16 22 H 0.08 2.29 6.05 -51.93 -0.31 1.97 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.01 0.14 6.20 -51.93 -0.32 -0.18 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.02 0.33 7.18 -51.93 -0.37 -0.05 16 27 H 0.07 1.21 5.64 -51.93 -0.29 0.91 16 28 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 31 H 0.06 0.58 6.13 -51.93 -0.32 0.27 16 32 H 0.39 3.48 6.40 -40.82 -0.26 3.22 16 33 H 0.41 4.21 8.93 -40.82 -0.36 3.84 16 34 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 35 H 0.09 1.90 6.96 -51.93 -0.36 1.53 16 36 H 0.11 2.26 5.56 -51.93 -0.29 1.97 16 37 H 0.02 0.39 7.14 -51.93 -0.37 0.02 16 LS Contribution 283.39 15.07 4.27 4.27 Total: -1.00 -32.19 283.39 -7.62 -39.81 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.28 Total: 4.33 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.16 Total: 4.74 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.52 Total: -56.73 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.19 -7.62 -39.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.786 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds