Wall clock time and date at job start Mon Mar 30 2020 03:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46683 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47426 * 119.99743 * 8 6 4 11 11 H 1.48501 * 109.46833 * 239.99986 * 8 6 4 12 12 N 1.46895 * 109.47514 * 120.00767 * 2 1 3 13 13 C 1.46269 * 111.00030 * 294.99938 * 12 2 1 14 14 C 1.47539 * 114.37459 * 148.55187 * 13 12 2 15 15 C 1.54946 * 109.73351 * 62.22213 * 14 13 12 16 16 N 1.44677 * 109.52191 * 290.51915 * 15 14 13 17 17 C 1.34777 * 118.54497 * 269.05541 * 16 15 14 18 18 N 1.34771 * 120.00318 * 0.02562 * 17 16 15 19 19 O 1.21595 * 119.99620 * 179.97438 * 17 16 15 20 20 C 1.47776 * 122.90270 * 89.07854 * 16 15 14 21 21 C 1.44765 * 111.00259 * 171.51034 * 12 2 1 22 22 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 23 23 H 1.08996 * 109.47350 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 25 25 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 26 26 H 1.09004 * 108.50309 * 269.82147 * 13 12 2 27 27 H 1.09002 * 108.49650 * 27.28342 * 13 12 2 28 28 H 1.09007 * 109.42623 * 182.30037 * 14 13 12 29 29 H 1.09002 * 109.42866 * 302.19219 * 14 13 12 30 30 H 1.08997 * 109.46165 * 50.53461 * 15 14 13 31 31 H 1.09000 * 109.45880 * 170.51475 * 15 14 13 32 32 H 0.96996 * 120.00065 * 0.02562 * 18 17 16 33 33 H 0.97002 * 119.99976 * 180.02562 * 18 17 16 34 34 H 1.09011 * 109.06100 * 78.64800 * 20 16 15 35 35 H 1.09003 * 109.06369 * 197.57227 * 20 16 15 36 36 H 1.09006 * 109.43294 * 337.92170 * 21 12 2 37 37 H 1.08992 * 109.43786 * 97.79230 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 3.1471 -2.2860 -3.6041 10 1 1.1613 -1.5953 -4.8129 11 1 3.1362 -0.1881 -4.8200 12 7 2.0197 -0.6926 1.1993 13 6 1.6504 0.0357 2.4128 14 6 1.4181 -0.8218 3.5907 15 6 2.7220 -1.5759 3.9541 16 7 3.0108 -2.5611 2.9347 17 6 2.5241 -3.8086 3.0884 18 7 1.7858 -4.1150 4.1735 19 8 2.7504 -4.6572 2.2475 20 6 3.8162 -2.2603 1.7328 21 6 3.4529 -0.8872 1.1372 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 0.6955 1.1524 -3.4842 26 1 2.4478 0.7402 2.6496 27 1 0.7411 0.6025 2.2127 28 1 1.1097 -0.2037 4.4340 29 1 0.6336 -1.5439 3.3644 30 1 3.5466 -0.8660 4.0170 31 1 2.5974 -2.0741 4.9156 32 1 1.6044 -3.4377 4.8437 33 1 1.4359 -5.0129 4.2842 34 1 4.8725 -2.2633 2.0022 35 1 3.6391 -3.0317 0.9833 36 1 3.7800 -0.8444 0.0982 37 1 3.9505 -0.1019 1.7061 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170806929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:54 Heat of formation + Delta-G solvation = -33.808025 kcal Electronic energy + Delta-G solvation = -18699.764071 eV Core-core repulsion = 15897.650876 eV Total energy + Delta-G solvation = -2802.113195 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.32297 -39.38036 -36.66999 -34.91440 -34.38602 -33.32427 -31.40085 -28.20769 -27.66117 -26.38962 -23.33959 -22.82308 -21.03176 -20.43297 -19.19080 -18.27233 -18.01131 -17.24575 -16.40604 -16.24976 -15.94777 -15.45373 -15.22584 -14.86097 -14.34928 -14.17607 -13.81497 -13.70762 -13.12195 -12.97928 -12.71660 -12.53015 -12.32653 -12.13287 -12.07466 -12.06729 -11.57260 -11.29566 -11.14572 -10.85743 -10.58016 -10.51933 -9.37146 -8.83991 -8.13657 -6.23820 1.37760 1.41070 1.52817 1.97626 2.35033 2.40709 3.14207 3.28097 3.51468 3.96788 4.14782 4.22691 4.30636 4.45663 4.64261 4.75962 4.78805 4.86628 4.88291 4.96279 5.08538 5.11860 5.16826 5.24499 5.44448 5.52327 5.71192 5.73790 5.85054 6.00808 6.13332 6.26675 6.48442 6.84919 6.95015 7.11992 7.45149 7.77617 8.92205 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028035 B = 0.007860 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.515037 B = 3561.326366 C = 4066.386291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.220 3.780 3 H -0.033 1.033 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.276 1.276 12 N -0.535 5.535 13 C 0.048 3.952 14 C -0.127 4.127 15 C 0.112 3.888 16 N -0.603 5.603 17 C 0.696 3.304 18 N -0.848 5.848 19 O -0.654 6.654 20 C 0.146 3.854 21 C 0.048 3.952 22 H 0.059 0.941 23 H 0.020 0.980 24 H 0.032 0.968 25 H 0.262 0.738 26 H 0.031 0.969 27 H 0.052 0.948 28 H 0.110 0.890 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.411 0.589 33 H 0.416 0.584 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.710 -2.125 16.750 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.113 3.887 3 H -0.015 1.015 4 C -0.556 4.556 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.202 1.202 12 N -0.259 5.259 13 C -0.080 4.080 14 C -0.166 4.166 15 C -0.011 4.011 16 N -0.338 5.338 17 C 0.395 3.605 18 N -0.419 5.419 19 O -0.537 6.537 20 C 0.022 3.978 21 C -0.081 4.081 22 H 0.078 0.922 23 H 0.039 0.961 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.128 0.872 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.124 0.876 32 H 0.244 0.756 33 H 0.249 0.751 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.660 -2.836 16.017 16.482 hybrid contribution 0.115 0.514 -1.074 1.196 sum 2.774 -2.322 14.943 15.375 Atomic orbital electron populations 1.21630 0.97677 0.98545 0.99635 1.19036 0.92372 0.90251 0.87000 1.01504 1.21459 1.30833 1.12094 0.91186 0.92690 1.25625 0.95378 0.95738 1.01675 1.70006 1.37458 1.24346 1.23955 0.85574 0.78157 0.78678 0.79665 1.19664 1.20851 1.20195 1.60943 1.12435 1.50243 1.02316 1.21114 1.00147 0.95453 0.91273 1.21470 0.98167 0.99563 0.97395 1.21769 0.97710 0.91483 0.90148 1.46766 1.54777 1.08826 1.23474 1.16256 0.78897 0.83005 0.82331 1.42879 1.57403 1.17680 1.23890 1.90890 1.66803 1.50090 1.45917 1.21689 0.93224 0.96826 0.86076 1.22321 0.89011 0.95471 1.01346 0.92209 0.96123 0.94921 0.92920 0.95065 0.92957 0.87164 0.92749 0.89400 0.87562 0.75590 0.75123 0.90436 0.92938 0.90747 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.93 71.98 0.64 -5.19 16 2 C 0.22 11.21 2.00 44.17 0.09 11.30 16 3 H -0.03 -1.82 8.13 -2.39 -0.02 -1.83 16 4 C -0.52 -28.96 7.40 25.60 0.19 -28.77 16 5 H 0.05 3.14 6.59 -2.91 -0.02 3.12 16 6 C 0.01 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -53.24 11.30 21.45 0.24 -53.00 16 8 Si 0.95 45.06 29.54 68.60 2.03 47.08 16 9 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 N -0.54 -22.29 4.02 -891.01 -3.58 -25.87 16 13 C 0.05 1.55 4.75 84.72 0.40 1.95 16 14 C -0.13 -2.89 6.02 29.55 0.18 -2.71 16 15 C 0.11 2.23 5.22 87.39 0.46 2.69 16 16 N -0.60 -17.86 2.53 -835.15 -2.12 -19.98 16 17 C 0.70 22.71 8.50 179.06 1.52 24.23 16 18 N -0.85 -17.50 8.71 -184.75 -1.61 -19.10 16 19 O -0.65 -28.66 16.46 -4.01 -0.07 -28.73 16 20 C 0.15 5.07 6.46 86.48 0.56 5.62 16 21 C 0.05 1.83 5.05 87.05 0.44 2.27 16 22 H 0.06 3.29 6.05 -2.39 -0.01 3.27 16 23 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.03 1.41 6.20 -2.39 -0.01 1.40 16 25 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.03 0.94 7.18 -2.39 -0.02 0.93 16 27 H 0.05 1.82 5.64 -2.39 -0.01 1.81 16 28 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.58 8.09 -2.39 -0.02 1.56 16 31 H 0.11 1.28 6.13 -2.39 -0.01 1.27 16 32 H 0.41 5.47 6.40 -92.71 -0.59 4.87 16 33 H 0.42 7.54 8.93 -92.71 -0.83 6.71 16 34 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.05 2.24 6.96 -2.39 -0.02 2.23 16 36 H 0.07 3.29 5.56 -2.38 -0.01 3.28 16 37 H 0.04 1.48 7.14 -2.39 -0.02 1.46 16 Total: -1.00 -72.89 283.39 -0.51 -73.40 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -0.33 Total: 13.54 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 4.92 Total: 12.66 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -7.06 Total: -117.96 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.07 Total: -28.73 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -72.89 -0.51 -73.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.592 kcal (2) G-P(sol) polarization free energy of solvation -72.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds