Wall clock time and date at job start Mon Mar 30 2020 03:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37098 * 120.00079 * 2 1 4 4 H 1.08001 * 120.00282 * 204.39528 * 3 2 1 5 5 C 1.38958 * 119.99665 * 24.39978 * 3 2 1 6 6 N 1.31405 * 119.99777 * 12.65192 * 5 3 2 7 7 Si 1.86803 * 119.99581 * 192.65609 * 5 3 2 8 8 H 1.48493 * 109.47319 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47143 * 120.00126 * 7 5 3 10 10 H 1.48504 * 109.46865 * 239.99721 * 7 5 3 11 11 C 1.34777 * 119.99968 * 180.02562 * 2 1 3 12 12 O 1.21293 * 119.99653 * 180.02562 * 11 2 1 13 13 C 1.50701 * 120.00176 * 359.97438 * 11 2 1 14 14 C 1.52992 * 109.47005 * 180.02562 * 13 11 2 15 15 C 1.53003 * 109.47143 * 180.02562 * 14 13 11 16 16 H 1.09002 * 109.52102 * 55.12293 * 15 14 13 17 17 C 1.53182 * 109.58247 * 175.21828 * 15 14 13 18 18 C 1.53165 * 109.03516 * 176.85498 * 17 15 14 19 19 C 1.53089 * 109.21918 * 303.11292 * 18 17 15 20 20 O 1.42912 * 109.41222 * 57.57415 * 19 18 17 21 21 C 1.42894 * 114.09825 * 298.84732 * 20 19 18 22 22 H 1.08995 * 109.47289 * 265.85974 * 1 2 3 23 23 H 1.09006 * 109.46947 * 25.86274 * 1 2 3 24 24 H 1.09003 * 109.47043 * 145.85504 * 1 2 3 25 25 H 0.97006 * 119.99664 * 179.97438 * 6 5 3 26 26 H 1.09002 * 109.46653 * 60.00012 * 13 11 2 27 27 H 1.08998 * 109.46910 * 300.00677 * 13 11 2 28 28 H 1.08997 * 109.47395 * 60.00163 * 14 13 11 29 29 H 1.08998 * 109.47385 * 299.99830 * 14 13 11 30 30 H 1.09004 * 109.48804 * 57.01579 * 17 15 14 31 31 H 1.09005 * 109.59333 * 296.75430 * 17 15 14 32 32 H 1.09007 * 109.52329 * 183.17739 * 18 17 15 33 33 H 1.08997 * 109.52689 * 63.05426 * 18 17 15 34 34 H 1.09000 * 109.48515 * 177.55741 * 19 18 17 35 35 H 1.08999 * 109.48408 * 297.58659 * 19 18 17 36 36 H 1.09001 * 109.47888 * 181.14267 * 21 20 19 37 37 H 1.09001 * 109.48084 * 301.17383 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2291 -0.3863 5 6 1.5488 2.3369 0.4971 6 7 0.4348 2.2489 1.1885 7 14 2.3235 4.0073 0.1824 8 1 3.5643 3.8352 -0.6149 9 1 1.3681 4.8630 -0.5662 10 1 2.6541 4.6518 1.4789 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1671 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 2.3797 -3.6351 -0.0005 15 6 1.6147 -4.9602 -0.0012 16 1 0.9241 -4.9817 -0.8442 17 6 2.6036 -6.1239 -0.1215 18 6 1.8326 -7.4449 -0.0418 19 6 1.0399 -7.4876 1.2672 20 8 0.1619 -6.3616 1.3277 21 6 0.8303 -5.0988 1.3062 22 1 -0.3633 -0.0742 1.0249 23 1 -0.3633 0.9248 -0.4483 24 1 -0.3633 -0.8505 -0.5768 25 1 0.0149 3.0515 1.5359 26 1 0.7584 -2.5298 -0.8903 27 1 0.7590 -2.5302 0.8896 28 1 3.0063 -3.5774 0.8894 29 1 3.0063 -3.5774 -0.8905 30 1 3.3256 -6.0732 0.6936 31 1 3.1252 -6.0631 -1.0767 32 1 2.5344 -8.2786 -0.0699 33 1 1.1466 -7.5178 -0.8856 34 1 0.4555 -8.4068 1.3085 35 1 1.7293 -7.4569 2.1109 36 1 0.0950 -4.2971 1.3758 37 1 1.5171 -5.0366 2.1504 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177785944.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:20 Heat of formation + Delta-G solvation = -98.283132 kcal Electronic energy + Delta-G solvation = -17657.737373 eV Core-core repulsion = 14820.535576 eV Total energy + Delta-G solvation = -2837.201797 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.52028 -38.33941 -35.11031 -34.39506 -32.61876 -31.56273 -29.34869 -26.31345 -25.13031 -25.01360 -23.73149 -21.41196 -19.99672 -18.59324 -16.83868 -16.36219 -16.25083 -15.65806 -15.02649 -14.68541 -14.32852 -14.18251 -14.09737 -13.57349 -12.91194 -12.64494 -12.45113 -12.13117 -11.66503 -11.49925 -11.25717 -11.22609 -11.19666 -10.98896 -10.85417 -10.50042 -10.40531 -10.26692 -10.15964 -10.13859 -9.39841 -8.98301 -8.32223 -7.61324 -6.28978 -3.84932 3.16967 3.27008 3.34096 3.86942 3.96630 4.17103 4.67231 4.76084 4.81101 4.93510 5.01218 5.15345 5.21674 5.38426 5.46420 5.62298 5.62854 5.67310 5.75607 5.81978 5.92223 5.98155 6.08591 6.11559 6.22027 6.28956 6.47332 6.58490 6.71335 6.89061 7.19628 7.22717 7.59937 8.19512 8.53554 9.23652 9.47989 10.04833 10.76231 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.055766 B = 0.004615 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.975904 B = 6066.279500 C = 6389.445661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.450 5.450 3 C -0.306 4.306 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.884 5.884 7 Si 0.924 3.076 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.282 1.282 11 C 0.446 3.554 12 O -0.593 6.593 13 C -0.131 4.131 14 C -0.091 4.091 15 C -0.123 4.123 16 H 0.077 0.923 17 C -0.118 4.118 18 C -0.156 4.156 19 C 0.059 3.941 20 O -0.385 6.385 21 C 0.062 3.938 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.026 0.974 25 H 0.266 0.734 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.098 0.902 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.956 -14.863 -1.290 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.169 5.169 3 C -0.434 4.434 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.523 5.523 7 Si 0.751 3.249 8 H -0.193 1.193 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.234 3.766 12 O -0.478 6.478 13 C -0.172 4.172 14 C -0.129 4.129 15 C -0.141 4.141 16 H 0.095 0.905 17 C -0.155 4.155 18 C -0.193 4.193 19 C -0.018 4.018 20 O -0.304 6.304 21 C -0.014 4.014 22 H 0.069 0.931 23 H 0.091 0.909 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.706 -14.715 -1.189 14.861 hybrid contribution 0.388 0.988 -0.062 1.063 sum -1.318 -13.727 -1.250 13.847 Atomic orbital electron populations 1.21459 0.81335 0.99833 1.00516 1.43616 1.05436 1.04886 1.62986 1.19692 1.00547 0.84319 1.38828 0.88532 1.25338 0.96658 1.00088 0.95261 1.70003 1.19336 1.29420 1.33571 0.85893 0.79173 0.81612 0.78197 1.19268 1.20693 1.20776 1.20166 0.88089 0.85022 0.83274 1.90499 1.14144 1.87322 1.55812 1.21593 0.98911 0.94090 1.02574 1.21247 0.97286 0.90885 1.03483 1.21853 0.97774 0.95482 0.99029 0.90452 1.21637 0.97729 0.93621 1.02538 1.22192 0.99758 0.98273 0.99106 1.22548 0.93384 0.89545 0.96286 1.87923 1.33713 1.14132 1.94631 1.22779 0.96952 0.85398 0.96301 0.93089 0.90851 0.95572 0.92380 0.90623 0.90443 0.91406 0.91220 0.91758 0.91379 0.91203 0.91185 0.89313 0.93397 0.88388 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.54 8.44 59.85 0.51 3.04 16 2 N -0.45 -11.76 3.01 -122.19 -0.37 -12.13 16 3 C -0.31 -8.71 9.24 -14.93 -0.14 -8.84 16 4 H 0.10 2.88 7.45 -52.49 -0.39 2.49 16 5 C 0.03 0.79 5.04 -17.47 -0.09 0.70 16 6 N -0.88 -23.95 10.83 55.50 0.60 -23.35 16 7 Si 0.92 21.04 29.57 -169.99 -5.03 16.01 16 8 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 C 0.45 10.98 7.63 -10.98 -0.08 10.90 16 12 O -0.59 -16.60 15.69 5.55 0.09 -16.52 16 13 C -0.13 -2.38 4.06 -27.89 -0.11 -2.49 16 14 C -0.09 -1.46 3.98 -26.73 -0.11 -1.56 16 15 C -0.12 -1.58 2.38 -90.48 -0.22 -1.79 16 16 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.12 -1.32 5.32 -26.55 -0.14 -1.46 16 18 C -0.16 -1.49 6.13 -26.60 -0.16 -1.66 16 19 C 0.06 0.60 6.84 37.20 0.25 0.86 16 20 O -0.39 -5.07 10.77 -35.23 -0.38 -5.45 16 21 C 0.06 0.80 5.82 37.21 0.22 1.02 16 22 H 0.05 1.18 7.83 -51.93 -0.41 0.77 16 23 H 0.07 1.75 6.80 -51.93 -0.35 1.40 16 24 H 0.03 0.48 6.61 -51.93 -0.34 0.14 16 25 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 26 H 0.08 1.24 7.41 -51.93 -0.38 0.85 16 27 H 0.08 1.30 6.59 -51.93 -0.34 0.96 16 28 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 29 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 1.26 6.69 -51.93 -0.35 0.92 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -31.50 295.12 -6.64 -38.13 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.93 Total: 0.14 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -0.07 Total: -1.29 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.23 Total: -35.48 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.29 Total: -21.96 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.50 -6.64 -38.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177785944.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.151 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds