Wall clock time and date at job start Mon Mar 30 2020 03:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.66617 * 2 1 4 4 C 1.53347 * 109.67249 * 239.50193 * 2 1 3 5 5 C 1.52919 * 108.67162 * 172.73688 * 4 2 1 6 6 N 1.45750 * 110.49134 * 50.75128 * 5 4 2 7 7 C 1.33364 * 124.10644 * 340.94557 * 6 5 4 8 8 O 1.21272 * 118.24514 * 181.91931 * 7 6 5 9 9 C 1.50175 * 123.50385 * 2.20351 * 7 6 5 10 10 H 1.09001 * 109.40351 * 102.54520 * 9 7 6 11 11 N 1.46902 * 109.39633 * 222.28996 * 9 7 6 12 12 N 1.45397 * 111.00176 * 69.41480 * 11 9 7 13 13 C 1.46900 * 110.99968 * 112.20231 * 12 11 9 14 14 C 1.46909 * 110.99788 * 236.15471 * 12 11 9 15 15 C 1.50697 * 109.47035 * 79.70482 * 14 12 11 16 16 H 1.08011 * 119.99880 * 5.70628 * 15 14 12 17 17 C 1.37869 * 120.00190 * 185.70784 * 15 14 12 18 18 N 1.31511 * 119.99857 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00096 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47325 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47482 * 119.99867 * 19 17 15 22 22 H 1.48505 * 109.46722 * 239.99733 * 19 17 15 23 23 H 1.09003 * 109.47228 * 180.50178 * 1 2 3 24 24 H 1.09000 * 109.47068 * 300.49871 * 1 2 3 25 25 H 1.09000 * 109.47479 * 60.50075 * 1 2 3 26 26 H 1.08993 * 109.60522 * 52.97708 * 4 2 1 27 27 H 1.09005 * 109.73695 * 292.56951 * 4 2 1 28 28 H 1.09001 * 109.29759 * 290.44096 * 5 4 2 29 29 H 1.08996 * 109.30184 * 171.06061 * 5 4 2 30 30 H 0.96998 * 117.95142 * 160.92466 * 6 5 4 31 31 H 1.00902 * 110.99957 * 193.37247 * 11 9 7 32 32 H 1.09002 * 109.47240 * 60.00041 * 13 12 11 33 33 H 1.08998 * 109.47013 * 179.97438 * 13 12 11 34 34 H 1.08997 * 109.47278 * 300.00064 * 13 12 11 35 35 H 1.08998 * 109.46905 * 199.70574 * 14 12 11 36 36 H 1.08994 * 109.47123 * 319.70427 * 14 12 11 37 37 H 0.97003 * 120.00074 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0463 -0.7328 -1.2442 5 6 3.5643 -0.5634 -1.3175 6 7 4.1794 -0.9197 -0.0451 7 6 3.5209 -0.9800 1.1130 8 8 4.1463 -1.2540 2.1153 9 6 2.0452 -0.7327 1.2414 10 1 1.5257 -1.6857 1.3409 11 7 1.7898 0.0873 2.4331 12 7 2.2829 1.4426 2.2486 13 6 1.1725 2.4019 2.1795 14 6 3.2289 1.8080 3.3115 15 6 4.5800 1.2138 3.0075 16 1 4.7467 0.7024 2.0709 17 6 5.6033 1.3229 3.9250 18 7 5.4004 1.9459 5.0653 19 14 7.2783 0.5870 3.5478 20 1 7.2469 -0.0549 2.2091 21 1 8.3044 1.6604 3.5586 22 1 7.6150 -0.4300 4.5762 23 1 -0.3634 -1.0276 0.0090 24 1 -0.3633 0.5216 0.8855 25 1 -0.3634 0.5060 -0.8944 26 1 1.5872 -0.3069 -2.1363 27 1 1.7994 -1.7924 -1.1763 28 1 3.8000 0.4743 -1.5535 29 1 3.9612 -1.2074 -2.1023 30 1 5.1272 -1.1262 -0.0404 31 1 0.8085 0.0883 2.6678 32 1 0.5993 2.3616 3.1058 33 1 1.5694 3.4077 2.0417 34 1 0.5249 2.1483 1.3402 35 1 3.3131 2.8933 3.3657 36 1 2.8692 1.4234 4.2659 37 1 6.1203 2.0224 5.7109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193193592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:25 Heat of formation + Delta-G solvation = 8.798785 kcal Electronic energy + Delta-G solvation = -19028.355723 eV Core-core repulsion = 16228.090098 eV Total energy + Delta-G solvation = -2800.265625 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.84668 -36.65856 -35.84855 -33.54426 -32.17614 -30.50523 -28.48789 -27.40637 -26.05919 -23.82033 -22.67405 -21.10928 -20.63009 -18.54405 -16.85195 -16.30847 -15.82677 -15.16339 -14.98667 -14.51527 -14.21236 -13.78553 -13.63852 -13.01107 -12.93140 -12.77402 -12.42411 -12.18265 -11.81026 -11.58618 -11.33880 -11.17881 -10.89643 -10.71747 -10.58625 -10.34981 -10.31756 -9.54739 -9.19185 -8.79858 -8.35265 -8.17083 -8.04516 -7.15305 -5.69495 -3.61771 3.52111 3.54260 3.61361 3.67646 3.94176 4.18377 4.76621 4.84178 4.90021 4.97620 5.17410 5.43858 5.51815 5.58515 5.66601 5.72729 5.73371 5.78617 5.88925 5.93557 5.94679 5.99378 6.11763 6.22378 6.32405 6.62139 7.21990 7.40082 7.52575 7.72836 8.04625 8.10704 8.37400 8.44019 8.81054 9.20310 9.42964 9.98266 11.42993 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.010314 C = 0.008086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.316793 B = 2714.141442 C = 3462.052618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 H 0.100 0.900 4 C -0.125 4.125 5 C 0.118 3.882 6 N -0.733 5.733 7 C 0.525 3.475 8 O -0.487 6.487 9 C 0.105 3.895 10 H 0.095 0.905 11 N -0.499 5.499 12 N -0.370 5.370 13 C -0.008 4.008 14 C 0.198 3.802 15 C -0.459 4.459 16 H 0.074 0.926 17 C 0.048 3.952 18 N -0.915 5.915 19 Si 0.900 3.100 20 H -0.274 1.274 21 H -0.295 1.295 22 H -0.290 1.290 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.393 0.607 31 H 0.320 0.680 32 H 0.021 0.979 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.022 0.978 36 H 0.010 0.990 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.039 -4.112 -14.219 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 H 0.118 0.882 4 C -0.164 4.164 5 C -0.007 4.007 6 N -0.389 5.389 7 C 0.309 3.691 8 O -0.357 6.357 9 C -0.009 4.009 10 H 0.113 0.887 11 N -0.221 5.221 12 N -0.186 5.186 13 C -0.158 4.158 14 C 0.074 3.926 15 C -0.498 4.498 16 H 0.092 0.908 17 C -0.150 4.150 18 N -0.558 5.558 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.222 1.222 22 H -0.217 1.217 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.228 0.772 31 H 0.138 0.862 32 H 0.040 0.960 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.028 0.972 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.041 -4.366 -13.567 16.878 hybrid contribution 0.082 0.047 0.003 0.095 sum -8.959 -4.319 -13.564 16.820 Atomic orbital electron populations 1.21881 0.95408 1.01456 1.01642 1.21981 0.95416 1.02620 0.94760 0.88172 1.21866 0.94847 1.00986 0.98693 1.21159 0.93463 1.00187 0.85907 1.45437 1.12932 1.73057 1.07485 1.19567 0.89519 0.77599 0.82408 1.90841 1.66940 1.43925 1.34024 1.21312 0.93470 0.96627 0.89511 0.88745 1.63687 1.20105 1.05948 1.32312 1.65647 1.10789 0.93271 1.48936 1.22971 0.95232 0.98411 0.99188 1.19827 0.90320 0.94704 0.87796 1.21290 0.93406 1.31934 1.03193 0.90840 1.24861 0.98953 0.96077 0.95132 1.69985 1.32360 1.45046 1.08385 0.86400 0.84096 0.78241 0.78292 1.19921 1.22228 1.21658 0.92868 0.92747 0.92624 0.90665 0.91600 0.92415 0.91752 0.77221 0.86213 0.96019 0.91127 0.92526 0.96024 0.97183 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.58 37.16 0.32 -1.21 16 2 C -0.13 -1.67 1.79 -90.40 -0.16 -1.83 16 3 H 0.10 1.57 6.36 -51.93 -0.33 1.24 16 4 C -0.13 -1.34 5.32 -26.59 -0.14 -1.48 16 5 C 0.12 1.41 7.17 -4.49 -0.03 1.38 16 6 N -0.73 -12.14 5.45 -61.39 -0.33 -12.48 16 7 C 0.52 10.60 5.51 -11.87 -0.07 10.54 16 8 O -0.49 -12.55 14.62 5.56 0.08 -12.47 16 9 C 0.11 1.77 2.62 -69.08 -0.18 1.59 16 10 H 0.09 1.42 8.10 -51.93 -0.42 1.00 16 11 N -0.50 -9.80 6.15 -5.84 -0.04 -9.84 16 12 N -0.37 -7.85 3.27 -122.42 -0.40 -8.25 16 13 C -0.01 -0.14 8.98 60.06 0.54 0.40 16 14 C 0.20 5.39 5.01 -4.97 -0.02 5.37 16 15 C -0.46 -13.68 7.57 -34.44 -0.26 -13.94 16 16 H 0.07 2.17 4.77 -52.48 -0.25 1.92 16 17 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 18 N -0.91 -29.30 13.29 55.43 0.74 -28.57 16 19 Si 0.90 24.40 29.54 -169.99 -5.02 19.38 16 20 H -0.27 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.30 -7.80 7.11 56.52 0.40 -7.39 16 22 H -0.29 -7.95 7.11 56.52 0.40 -7.55 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.59 5.82 -51.93 -0.30 0.29 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.39 6.54 8.80 -40.82 -0.36 6.18 16 31 H 0.32 5.35 7.39 -174.66 -1.29 4.06 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 1.20 7.96 -51.93 -0.41 0.78 16 34 H 0.06 0.79 5.32 -51.93 -0.28 0.52 16 35 H 0.02 0.62 7.76 -51.93 -0.40 0.22 16 36 H 0.01 0.31 8.11 -51.93 -0.42 -0.11 16 37 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 287.33 15.07 4.33 4.33 Total: -1.00 -35.72 287.33 -7.31 -43.03 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.56 Total: 2.66 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.11 Total: 2.19 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.03 Total: -59.13 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.47 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.02 Total: 19.38 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -35.72 -7.31 -43.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193193592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.833 kcal (2) G-P(sol) polarization free energy of solvation -35.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds