Wall clock time and date at job start Mon Mar 30 2020 03:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.66617 * 2 1 4 4 C 1.53347 * 109.67249 * 239.50193 * 2 1 3 5 5 C 1.52919 * 108.67162 * 172.73688 * 4 2 1 6 6 N 1.45750 * 110.49134 * 50.75128 * 5 4 2 7 7 C 1.33364 * 124.10644 * 340.94557 * 6 5 4 8 8 O 1.21272 * 118.24514 * 181.91931 * 7 6 5 9 9 C 1.50175 * 123.50385 * 2.20351 * 7 6 5 10 10 H 1.09001 * 109.40351 * 102.54520 * 9 7 6 11 11 N 1.46902 * 109.39633 * 222.28996 * 9 7 6 12 12 N 1.45397 * 111.00176 * 69.41480 * 11 9 7 13 13 C 1.46900 * 110.99968 * 112.20231 * 12 11 9 14 14 C 1.46909 * 110.99788 * 236.15471 * 12 11 9 15 15 C 1.50697 * 109.47035 * 79.70482 * 14 12 11 16 16 H 1.08011 * 119.99880 * 5.70628 * 15 14 12 17 17 C 1.37869 * 120.00190 * 185.70784 * 15 14 12 18 18 N 1.31511 * 119.99857 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00096 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47325 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47482 * 119.99867 * 19 17 15 22 22 H 1.48505 * 109.46722 * 239.99733 * 19 17 15 23 23 H 1.09003 * 109.47228 * 180.50178 * 1 2 3 24 24 H 1.09000 * 109.47068 * 300.49871 * 1 2 3 25 25 H 1.09000 * 109.47479 * 60.50075 * 1 2 3 26 26 H 1.08993 * 109.60522 * 52.97708 * 4 2 1 27 27 H 1.09005 * 109.73695 * 292.56951 * 4 2 1 28 28 H 1.09001 * 109.29759 * 290.44096 * 5 4 2 29 29 H 1.08996 * 109.30184 * 171.06061 * 5 4 2 30 30 H 0.96998 * 117.95142 * 160.92466 * 6 5 4 31 31 H 1.00902 * 110.99957 * 193.37247 * 11 9 7 32 32 H 1.09002 * 109.47240 * 60.00041 * 13 12 11 33 33 H 1.08998 * 109.47013 * 179.97438 * 13 12 11 34 34 H 1.08997 * 109.47278 * 300.00064 * 13 12 11 35 35 H 1.08998 * 109.46905 * 199.70574 * 14 12 11 36 36 H 1.08994 * 109.47123 * 319.70427 * 14 12 11 37 37 H 0.97003 * 120.00074 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0463 -0.7328 -1.2442 5 6 3.5643 -0.5634 -1.3175 6 7 4.1794 -0.9197 -0.0451 7 6 3.5209 -0.9800 1.1130 8 8 4.1463 -1.2540 2.1153 9 6 2.0452 -0.7327 1.2414 10 1 1.5257 -1.6857 1.3409 11 7 1.7898 0.0873 2.4331 12 7 2.2829 1.4426 2.2486 13 6 1.1725 2.4019 2.1795 14 6 3.2289 1.8080 3.3115 15 6 4.5800 1.2138 3.0075 16 1 4.7467 0.7024 2.0709 17 6 5.6033 1.3229 3.9250 18 7 5.4004 1.9459 5.0653 19 14 7.2783 0.5870 3.5478 20 1 7.2469 -0.0549 2.2091 21 1 8.3044 1.6604 3.5586 22 1 7.6150 -0.4300 4.5762 23 1 -0.3634 -1.0276 0.0090 24 1 -0.3633 0.5216 0.8855 25 1 -0.3634 0.5060 -0.8944 26 1 1.5872 -0.3069 -2.1363 27 1 1.7994 -1.7924 -1.1763 28 1 3.8000 0.4743 -1.5535 29 1 3.9612 -1.2074 -2.1023 30 1 5.1272 -1.1262 -0.0404 31 1 0.8085 0.0883 2.6678 32 1 0.5993 2.3616 3.1058 33 1 1.5694 3.4077 2.0417 34 1 0.5249 2.1483 1.3402 35 1 3.3131 2.8933 3.3657 36 1 2.8692 1.4234 4.2659 37 1 6.1203 2.0224 5.7109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193193592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:24 Heat of formation + Delta-G solvation = -19.635186 kcal Electronic energy + Delta-G solvation = -19029.588713 eV Core-core repulsion = 16228.090098 eV Total energy + Delta-G solvation = -2801.498615 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.20462 -38.20375 -37.26571 -35.12239 -34.17604 -31.93770 -29.54418 -29.41156 -27.33523 -25.67244 -24.00719 -22.50269 -22.12081 -19.83643 -18.59019 -17.91323 -17.37717 -16.76057 -16.59363 -16.25740 -15.61115 -15.16989 -15.08497 -14.54116 -14.32516 -13.95920 -13.90530 -13.63989 -13.34474 -13.12354 -12.84202 -12.64277 -12.45305 -12.29220 -12.17473 -11.76233 -11.63612 -11.50929 -11.15499 -10.50569 -10.42324 -9.81508 -9.65810 -8.80164 -8.03973 -6.01300 1.33741 1.39532 1.51857 2.05499 2.47618 2.62407 2.74355 3.31808 3.83183 3.91010 3.95725 4.06847 4.22210 4.44082 4.53448 4.58815 4.61411 4.69359 4.87101 4.90516 4.95111 5.05296 5.11310 5.15937 5.26160 5.33946 5.40503 5.60919 5.85851 6.03230 6.15049 6.26728 6.49392 6.74503 6.96093 7.12737 7.62103 7.73928 9.08607 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.010314 C = 0.008086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.316793 B = 2714.141442 C = 3462.052618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 H 0.076 0.924 4 C -0.119 4.119 5 C 0.108 3.892 6 N -0.729 5.729 7 C 0.516 3.484 8 O -0.559 6.559 9 C 0.104 3.896 10 H 0.115 0.885 11 N -0.524 5.524 12 N -0.368 5.368 13 C -0.005 4.005 14 C 0.214 3.786 15 C -0.457 4.457 16 H 0.075 0.925 17 C -0.012 4.012 18 N -0.951 5.951 19 Si 0.957 3.043 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.296 1.296 23 H 0.068 0.932 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.389 0.611 31 H 0.336 0.664 32 H 0.023 0.977 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.003 0.997 36 H -0.032 1.032 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.423 -4.740 -17.281 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.139 4.139 3 H 0.094 0.906 4 C -0.157 4.157 5 C -0.015 4.015 6 N -0.382 5.382 7 C 0.302 3.698 8 O -0.435 6.435 9 C -0.010 4.010 10 H 0.132 0.868 11 N -0.248 5.248 12 N -0.184 5.184 13 C -0.155 4.155 14 C 0.087 3.913 15 C -0.496 4.496 16 H 0.093 0.907 17 C -0.206 4.206 18 N -0.596 5.596 19 Si 0.785 3.215 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.223 1.223 23 H 0.087 0.913 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.127 0.873 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.223 0.777 31 H 0.156 0.844 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.021 0.979 36 H -0.014 1.014 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.462 -4.981 -16.719 20.342 hybrid contribution 0.427 0.196 0.857 0.977 sum -10.035 -4.784 -15.862 19.370 Atomic orbital electron populations 1.21840 0.92850 1.02748 1.02353 1.21858 0.97392 1.00776 0.93885 0.90608 1.21900 0.93522 1.01706 0.98605 1.21538 0.94722 1.00935 0.84302 1.45566 1.12914 1.71356 1.08397 1.20287 0.90934 0.76233 0.82349 1.90800 1.68623 1.47511 1.36606 1.21427 0.91664 0.97445 0.90447 0.86776 1.63413 1.21390 1.04946 1.35061 1.65417 1.12345 0.95126 1.45525 1.23037 0.94307 0.97304 1.00818 1.19433 0.91216 0.93046 0.87610 1.21651 0.94474 1.30571 1.02926 0.90703 1.25677 1.02670 0.96964 0.95303 1.70106 1.33366 1.46763 1.09378 0.85492 0.80402 0.77560 0.78016 1.19246 1.20781 1.22289 0.91330 0.93461 0.90484 0.87318 0.90296 0.92496 0.88294 0.77696 0.84377 0.95830 0.91359 0.88734 0.97899 1.01403 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.58 71.98 0.62 -1.68 16 2 C -0.12 -2.71 1.79 -10.65 -0.02 -2.73 16 3 H 0.08 2.15 6.36 -2.39 -0.02 2.14 16 4 C -0.12 -1.99 5.32 30.68 0.16 -1.82 16 5 C 0.11 2.22 7.17 86.49 0.62 2.84 16 6 N -0.73 -23.15 5.45 -467.33 -2.55 -25.70 16 7 C 0.52 20.61 5.51 87.71 0.48 21.09 16 8 O -0.56 -29.47 14.62 -3.00 -0.04 -29.51 16 9 C 0.10 3.33 2.62 44.03 0.12 3.44 16 10 H 0.11 3.18 8.10 -2.39 -0.02 3.16 16 11 N -0.52 -20.36 6.15 -172.38 -1.06 -21.42 16 12 N -0.37 -15.64 3.27 -541.23 -1.77 -17.41 16 13 C -0.01 -0.18 8.98 127.69 1.15 0.97 16 14 C 0.21 12.02 5.01 85.55 0.43 12.45 16 15 C -0.46 -27.98 7.57 25.60 0.19 -27.79 16 16 H 0.07 4.51 4.77 -2.91 -0.01 4.50 16 17 C -0.01 -0.77 5.46 84.65 0.46 -0.31 16 18 N -0.95 -62.95 13.29 21.44 0.28 -62.66 16 19 Si 0.96 51.33 29.54 68.60 2.03 53.36 16 20 H -0.27 -13.91 7.11 99.48 0.71 -13.20 16 21 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 22 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 23 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 24 H 0.05 0.84 5.82 -2.39 -0.01 0.83 16 25 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 1.18 8.13 -2.38 -0.02 1.16 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.39 12.68 8.80 -92.71 -0.82 11.87 16 31 H 0.34 10.86 7.39 -204.85 -1.51 9.35 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 2.26 7.96 -2.39 -0.02 2.24 16 34 H 0.09 2.38 5.32 -2.39 -0.01 2.36 16 35 H 0.00 0.19 7.76 -2.39 -0.02 0.17 16 36 H -0.03 -2.04 8.11 -2.39 -0.02 -2.06 16 37 H 0.25 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -81.62 287.33 -0.15 -81.76 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -1.25 Total: 15.12 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 4.21 Total: 6.46 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -5.09 Total: -127.19 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.04 Total: -29.51 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.03 Total: 53.36 kcal Total: -81.62 -0.15 -81.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193193592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.128 kcal (2) G-P(sol) polarization free energy of solvation -81.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds