Wall clock time and date at job start Mon Mar 30 2020 04:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46899 * 111.00275 * 2 1 4 4 C 1.46901 * 111.00358 * 123.96080 * 2 1 3 5 5 C 1.52996 * 109.46839 * 66.04015 * 4 2 1 6 6 N 1.46510 * 109.46828 * 180.02562 * 5 4 2 7 7 C 1.46006 * 118.53398 * 90.00069 * 6 5 4 8 8 C 1.52985 * 109.94811 * 198.21970 * 7 6 5 9 9 N 1.47170 * 108.74136 * 309.52658 * 8 7 6 10 10 C 1.46906 * 110.05212 * 69.18493 * 9 8 7 11 11 H 1.08999 * 109.38719 * 69.81658 * 10 9 8 12 12 C 1.50701 * 109.38083 * 189.49981 * 10 9 8 13 13 H 1.07998 * 119.99705 * 120.52350 * 12 10 9 14 14 C 1.37877 * 120.00205 * 300.51638 * 12 10 9 15 15 N 1.31509 * 119.99891 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99889 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47212 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47084 * 120.00275 * 16 14 12 19 19 H 1.48511 * 109.46766 * 240.00032 * 16 14 12 20 20 C 1.33709 * 118.53357 * 270.02492 * 6 5 4 21 21 O 1.21287 * 118.63263 * 358.31192 * 20 6 5 22 22 H 1.09008 * 109.46823 * 296.04219 * 1 2 3 23 23 H 1.09000 * 109.47510 * 56.04097 * 1 2 3 24 24 H 1.08999 * 109.47667 * 176.04704 * 1 2 3 25 25 H 1.09001 * 109.47534 * 183.95638 * 3 2 1 26 26 H 1.09003 * 109.47352 * 303.96224 * 3 2 1 27 27 H 1.09004 * 109.47036 * 63.95617 * 3 2 1 28 28 H 1.09000 * 109.46479 * 306.04383 * 4 2 1 29 29 H 1.08994 * 109.47283 * 186.04482 * 4 2 1 30 30 H 1.09000 * 109.47285 * 60.00861 * 5 4 2 31 31 H 1.08994 * 109.47633 * 299.99742 * 5 4 2 32 32 H 1.09002 * 109.37798 * 318.33851 * 7 6 5 33 33 H 1.08999 * 109.37620 * 78.10759 * 7 6 5 34 34 H 1.09001 * 109.59149 * 69.42278 * 8 7 6 35 35 H 1.08997 * 109.59741 * 189.87776 * 8 7 6 36 36 H 1.00901 * 111.09796 * 305.83623 * 9 8 7 37 37 H 0.97003 * 120.00342 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6314 -2.2427 0.9701 6 7 2.1560 -3.0066 2.1048 7 6 1.3111 -3.1728 3.2840 8 6 2.1660 -3.5811 4.4852 9 7 3.0119 -4.7214 4.0979 10 6 4.0321 -4.2874 3.1341 11 1 4.7583 -3.6500 3.6384 12 6 4.7355 -5.4959 2.5721 13 1 4.7157 -5.6864 1.5092 14 6 5.4043 -6.3582 3.4148 15 7 5.4280 -6.1263 4.7090 16 14 6.2768 -7.8558 2.7180 17 1 6.1007 -7.8899 1.2439 18 1 7.7239 -7.7812 3.0426 19 1 5.6986 -9.0872 3.3138 20 6 3.3872 -3.5201 2.0146 21 8 4.0097 -3.3602 0.9859 22 1 -0.3633 0.4512 0.9234 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0828 1.3432 -0.0709 26 1 1.5897 1.9164 -0.8524 27 1 1.7044 1.8723 0.9233 28 1 1.5611 -0.3874 2.0627 29 1 3.0797 -0.6612 1.1755 30 1 2.0657 -2.6214 0.0449 31 1 0.5471 -2.3475 0.9322 32 1 0.8061 -2.2319 3.5026 33 1 0.5675 -3.9458 3.0900 34 1 2.7946 -2.7436 4.7880 35 1 1.5188 -3.8729 5.3122 36 1 2.4560 -5.4747 3.7214 37 1 5.8982 -6.7331 5.3020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220475328.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:05 Heat of formation + Delta-G solvation = -13.860541 kcal Electronic energy + Delta-G solvation = -18100.133989 eV Core-core repulsion = 15298.885782 eV Total energy + Delta-G solvation = -2801.248207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.74414 -37.46921 -35.79961 -34.30472 -32.17221 -29.43513 -28.72001 -27.67935 -25.89494 -24.48338 -22.48796 -22.19953 -20.89300 -18.26600 -16.80645 -16.18172 -16.00716 -15.27354 -15.22165 -14.67504 -14.35433 -14.01465 -13.79657 -13.65388 -13.12313 -12.62332 -12.49756 -12.29382 -11.89484 -11.82367 -11.69896 -11.54096 -11.30631 -10.88026 -10.74900 -10.64827 -10.51621 -10.05129 -9.39932 -9.03235 -8.49884 -8.46758 -8.12016 -7.01233 -5.96580 -4.09286 3.33498 3.41304 3.42857 3.48366 3.65878 4.12143 4.48128 4.98749 5.05345 5.10491 5.14716 5.26114 5.33329 5.42980 5.45123 5.56801 5.58279 5.67274 5.77263 5.78194 5.82876 5.85332 6.12746 6.17480 6.32698 6.41778 6.85621 6.94681 7.05850 7.20658 7.69875 7.90810 8.23932 8.33072 8.64225 9.01843 9.16487 9.58474 11.08437 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.038404 B = 0.005946 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.908320 B = 4708.106349 C = 5109.683167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.545 5.545 3 C 0.027 3.973 4 C 0.045 3.955 5 C 0.114 3.886 6 N -0.621 5.621 7 C 0.081 3.919 8 C 0.037 3.963 9 N -0.642 5.642 10 C 0.215 3.785 11 H 0.071 0.929 12 C -0.525 4.525 13 H 0.066 0.934 14 C 0.080 3.920 15 N -0.849 5.849 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.489 3.511 21 O -0.548 6.548 22 H 0.023 0.977 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.023 0.977 28 H 0.031 0.969 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.333 0.667 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.133 10.203 -2.690 15.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.269 5.269 3 C -0.122 4.122 4 C -0.084 4.084 5 C -0.010 4.010 6 N -0.357 5.357 7 C -0.044 4.044 8 C -0.094 4.094 9 N -0.272 5.272 10 C 0.104 3.896 11 H 0.088 0.912 12 C -0.565 4.565 13 H 0.084 0.916 14 C -0.127 4.127 15 N -0.484 5.484 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 C 0.278 3.722 21 O -0.424 6.424 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.151 0.849 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.111 10.015 -2.903 14.525 hybrid contribution -0.568 -0.088 -0.275 0.637 sum -10.679 9.927 -3.178 14.923 Atomic orbital electron populations 1.22448 0.87702 1.02356 1.00188 1.61880 1.07717 1.13768 1.43565 1.22365 1.01084 0.88611 1.00114 1.22478 1.00989 0.94388 0.90535 1.21261 0.97907 0.89928 0.91893 1.47764 1.16876 1.54471 1.16586 1.22264 0.94311 1.00446 0.87417 1.22423 0.95663 0.96458 0.94856 1.61278 1.14200 1.06214 1.45464 1.19350 0.90445 0.95293 0.84463 0.91200 1.20828 1.33867 1.07822 0.93937 0.91589 1.24958 0.95245 0.97736 0.94715 1.70120 1.39887 1.36196 1.02204 0.86520 0.79359 0.82554 0.79476 1.19668 1.20924 1.20977 1.22749 0.79859 0.77967 0.91638 1.90559 1.61512 1.59190 1.31100 0.95831 0.91514 0.91121 0.91203 0.91446 0.95869 0.95118 0.90308 0.89207 0.91770 0.92273 0.92715 0.91306 0.90391 0.84930 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.32 60.06 0.56 0.78 16 2 N -0.55 -7.13 5.02 -251.26 -1.26 -8.39 16 3 C 0.03 0.29 9.57 60.06 0.57 0.87 16 4 C 0.05 0.67 5.28 -3.83 -0.02 0.65 16 5 C 0.11 1.86 5.21 -4.04 -0.02 1.84 16 6 N -0.62 -11.51 2.83 -174.58 -0.49 -12.01 16 7 C 0.08 1.23 6.48 -4.32 -0.03 1.20 16 8 C 0.04 0.63 6.65 -3.68 -0.02 0.61 16 9 N -0.64 -14.24 5.97 -109.22 -0.65 -14.89 16 10 C 0.21 5.43 2.56 -70.23 -0.18 5.25 16 11 H 0.07 1.94 8.14 -51.93 -0.42 1.52 16 12 C -0.53 -14.77 8.32 -34.44 -0.29 -15.06 16 13 H 0.07 1.96 7.39 -52.49 -0.39 1.57 16 14 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 15 N -0.85 -23.98 12.74 55.43 0.71 -23.27 16 16 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 C 0.49 11.46 7.10 -11.67 -0.08 11.37 16 21 O -0.55 -14.59 15.50 5.55 0.09 -14.51 16 22 H 0.02 0.23 8.14 -51.92 -0.42 -0.19 16 23 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 24 H 0.07 0.72 6.47 -51.93 -0.34 0.39 16 25 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 26 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 29 H 0.08 1.37 8.06 -51.93 -0.42 0.95 16 30 H 0.09 1.71 7.21 -51.93 -0.37 1.33 16 31 H 0.06 0.88 6.44 -51.93 -0.33 0.54 16 32 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.33 7.35 8.56 -39.29 -0.34 7.01 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 LS Contribution 300.63 15.07 4.53 4.53 Total: -1.00 -31.18 300.63 -7.67 -38.85 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.96 Total: 3.63 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 0.40 Total: 9.63 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -1.70 Total: -58.57 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.09 Total: -14.51 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.18 -7.67 -38.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220475328.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.994 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds