Wall clock time and date at job start Mon Mar 30 2020 04:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00055 * 2 1 4 4 C 1.53005 * 109.47244 * 180.02562 * 3 2 1 5 5 H 1.08992 * 110.41730 * 67.31497 * 4 3 2 6 6 C 1.54907 * 110.37302 * 189.62939 * 4 3 2 7 7 C 1.55141 * 101.65059 * 155.90120 * 6 4 3 8 8 C 1.54313 * 103.01898 * 324.34312 * 7 6 4 9 9 N 1.47445 * 107.23556 * 22.28535 * 8 7 6 10 10 C 1.46895 * 110.99981 * 123.25501 * 9 8 7 11 11 C 1.50700 * 109.47048 * 69.87629 * 10 9 8 12 12 O 1.21292 * 119.99931 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99961 * 179.97438 * 11 10 9 14 14 C 1.37099 * 119.99504 * 180.02562 * 13 11 10 15 15 H 1.07999 * 120.00446 * 359.97438 * 14 13 11 16 16 C 1.38955 * 119.99362 * 180.02562 * 14 13 11 17 17 N 1.31406 * 120.00245 * 359.71960 * 16 14 13 18 18 Si 1.86803 * 119.99625 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47085 * 89.99660 * 18 16 14 20 20 H 1.48497 * 109.46789 * 209.99669 * 18 16 14 21 21 H 1.48490 * 109.47245 * 329.99818 * 18 16 14 22 22 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46681 * 299.99663 * 1 2 3 24 24 H 1.09002 * 109.47382 * 59.99687 * 1 2 3 25 25 H 1.00899 * 111.00117 * 123.95384 * 2 1 3 26 26 H 1.08997 * 109.46798 * 60.00086 * 3 2 1 27 27 H 1.08998 * 109.47200 * 300.00271 * 3 2 1 28 28 H 1.09001 * 110.99231 * 37.80448 * 6 4 3 29 29 H 1.09004 * 111.01737 * 274.00630 * 6 4 3 30 30 H 1.09001 * 110.70337 * 205.96358 * 7 6 4 31 31 H 1.08997 * 110.85650 * 82.79822 * 7 6 4 32 32 H 1.09002 * 109.88824 * 262.87912 * 8 7 6 33 33 H 1.08999 * 110.02334 * 141.76733 * 8 7 6 34 34 H 1.09004 * 109.47549 * 309.87645 * 10 9 8 35 35 H 1.09005 * 109.47114 * 189.87721 * 10 9 8 36 36 H 0.96999 * 120.00044 * 359.97438 * 13 11 10 37 37 H 0.97000 * 120.00281 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5250 1.3307 -0.0006 5 1 3.8941 0.9269 -0.9433 6 6 4.1023 2.7474 0.2423 7 6 5.5036 2.4196 0.8216 8 6 5.2450 1.1499 1.6597 9 7 4.0187 0.5220 1.1343 10 6 4.2726 -0.8647 0.7216 11 6 4.5177 -1.7150 1.9414 12 8 4.4837 -1.2150 3.0460 13 7 4.7737 -3.0313 1.8050 14 6 4.9961 -3.8048 2.9149 15 1 4.9666 -3.3595 3.8983 16 6 5.2606 -5.1617 2.7742 17 7 5.2920 -5.7045 1.5779 18 14 5.5643 -6.2157 4.2863 19 1 4.2747 -6.7705 4.7701 20 1 6.4824 -7.3293 3.9370 21 1 6.1773 -5.3850 5.3536 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 1.8306 -0.5261 0.7813 26 1 1.6460 1.8947 0.8900 27 1 1.6459 1.8948 -0.8899 28 1 3.4992 3.2961 0.9657 29 1 4.1862 3.3010 -0.6930 30 1 5.8591 3.2330 1.4542 31 1 6.2160 2.2153 0.0223 32 1 5.1046 1.4189 2.7066 33 1 6.0846 0.4616 1.5632 34 1 5.1492 -0.8965 0.0744 35 1 3.4072 -1.2469 0.1801 36 1 4.7998 -3.4313 0.9218 37 1 5.4762 -6.6517 1.4797 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227728105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:16 Heat of formation + Delta-G solvation = -27.716694 kcal Electronic energy + Delta-G solvation = -17909.511383 eV Core-core repulsion = 15107.662328 eV Total energy + Delta-G solvation = -2801.849055 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.40777 -37.56011 -35.36198 -33.85458 -31.83768 -31.06319 -29.98097 -26.64144 -25.64576 -24.20746 -22.87300 -20.98903 -19.86239 -18.99957 -17.78518 -16.66660 -15.80094 -15.36333 -14.97173 -14.48745 -14.21694 -13.91893 -13.82446 -13.53540 -13.26974 -12.76632 -12.34719 -12.05912 -11.84012 -11.80575 -11.54787 -11.24043 -11.07442 -10.95369 -10.75639 -10.67100 -10.43132 -10.35835 -10.16422 -9.43876 -8.43461 -8.23822 -7.90133 -7.80592 -6.35870 -3.76393 3.21264 3.29344 3.35214 3.99444 4.06354 4.27873 4.37402 4.73305 4.97679 5.05803 5.26151 5.31687 5.33819 5.40495 5.50547 5.61052 5.66867 5.70315 5.82254 5.85109 5.90666 5.95690 6.02900 6.12486 6.18342 6.29918 6.39615 6.54747 7.11555 7.37501 7.40666 7.58017 7.60287 8.12786 8.69101 9.24523 9.62157 10.14608 10.82029 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.005977 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.559452 B = 4683.713530 C = 5306.097845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.699 5.699 3 C 0.077 3.923 4 C 0.069 3.931 5 H 0.060 0.940 6 C -0.121 4.121 7 C -0.144 4.144 8 C 0.058 3.942 9 N -0.504 5.504 10 C 0.035 3.965 11 C 0.444 3.556 12 O -0.579 6.579 13 N -0.567 5.567 14 C -0.297 4.297 15 H 0.102 0.898 16 C 0.021 3.979 17 N -0.903 5.903 18 Si 0.929 3.071 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.270 1.270 22 H 0.066 0.934 23 H 0.019 0.981 24 H 0.058 0.942 25 H 0.358 0.642 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.102 0.898 36 H 0.392 0.608 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.763 12.762 -6.154 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.332 5.332 3 C -0.053 4.053 4 C -0.039 4.039 5 H 0.078 0.922 6 C -0.160 4.160 7 C -0.183 4.183 8 C -0.070 4.070 9 N -0.229 5.229 10 C -0.097 4.097 11 C 0.229 3.771 12 O -0.462 6.462 13 N -0.204 5.204 14 C -0.427 4.427 15 H 0.120 0.880 16 C -0.180 4.180 17 N -0.544 5.544 18 Si 0.756 3.244 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.195 1.195 22 H 0.084 0.916 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.179 0.821 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.225 0.775 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.080 12.786 -5.735 14.595 hybrid contribution 0.608 -0.692 0.400 1.005 sum -3.472 12.093 -5.334 13.666 Atomic orbital electron populations 1.22151 0.88494 1.01735 0.99744 1.60547 1.07249 1.14182 1.51260 1.21899 0.93494 0.90077 0.99826 1.22648 0.94770 0.92986 0.93544 0.92187 1.22686 0.96321 0.96096 1.00896 1.22844 0.96879 0.98833 0.99723 1.22680 0.90964 0.93777 0.99564 1.63082 1.29804 1.00702 1.29290 1.22241 1.01484 0.89444 0.96537 1.19834 0.84122 0.83047 0.90079 1.90513 1.56164 1.72754 1.26812 1.41869 1.62218 1.06523 1.09770 1.19682 1.44694 0.89892 0.88417 0.88036 1.25240 0.97601 0.97242 0.97913 1.69614 1.49742 1.13300 1.21756 0.85880 0.78217 0.79188 0.81124 1.20457 1.20999 1.19509 0.91566 0.96254 0.92285 0.82136 0.94788 0.91412 0.90730 0.91102 0.91013 0.91800 0.90208 0.92797 0.93568 0.88024 0.77511 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.70 60.06 0.64 0.99 16 2 N -0.70 -10.02 5.99 -121.13 -0.73 -10.74 16 3 C 0.08 1.00 5.52 -3.82 -0.02 0.98 16 4 C 0.07 0.94 2.81 -66.18 -0.19 0.75 16 5 H 0.06 0.82 7.81 -51.93 -0.41 0.41 16 6 C -0.12 -1.36 6.50 -24.59 -0.16 -1.52 16 7 C -0.14 -1.75 6.94 -24.91 -0.17 -1.92 16 8 C 0.06 0.95 5.65 -2.84 -0.02 0.93 16 9 N -0.50 -8.52 4.07 -224.81 -0.91 -9.44 16 10 C 0.03 0.64 4.38 -4.98 -0.02 0.62 16 11 C 0.44 10.62 7.43 -10.98 -0.08 10.54 16 12 O -0.58 -15.77 15.12 5.55 0.08 -15.68 16 13 N -0.57 -14.59 5.29 -10.96 -0.06 -14.64 16 14 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 15 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 16 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 17 N -0.90 -24.91 13.05 55.50 0.72 -24.18 16 18 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.36 5.96 6.39 -39.29 -0.25 5.71 16 26 H 0.03 0.46 8.03 -51.93 -0.42 0.04 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.83 7.97 -51.93 -0.41 0.41 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.05 0.96 7.31 -51.93 -0.38 0.58 16 34 H 0.05 0.81 7.96 -51.93 -0.41 0.40 16 35 H 0.10 1.80 5.94 -51.93 -0.31 1.49 16 36 H 0.39 9.74 7.90 -40.82 -0.32 9.41 16 37 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 299.39 15.07 4.51 4.51 Total: -1.00 -30.41 299.39 -7.46 -37.87 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -5.80 Total: 12.69 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -0.26 Total: 3.31 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.97 Total: -59.01 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.08 Total: -15.68 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.41 -7.46 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227728105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.155 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds