Wall clock time and date at job start Mon Mar 30 2020 04:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00055 * 2 1 4 4 C 1.53005 * 109.47244 * 180.02562 * 3 2 1 5 5 H 1.08992 * 110.41730 * 67.31497 * 4 3 2 6 6 C 1.54907 * 110.37302 * 189.62939 * 4 3 2 7 7 C 1.55141 * 101.65059 * 155.90120 * 6 4 3 8 8 C 1.54313 * 103.01898 * 324.34312 * 7 6 4 9 9 N 1.47445 * 107.23556 * 22.28535 * 8 7 6 10 10 C 1.46895 * 110.99981 * 123.25501 * 9 8 7 11 11 C 1.50700 * 109.47048 * 69.87629 * 10 9 8 12 12 O 1.21292 * 119.99931 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99961 * 179.97438 * 11 10 9 14 14 C 1.37099 * 119.99504 * 180.02562 * 13 11 10 15 15 H 1.07999 * 120.00446 * 359.97438 * 14 13 11 16 16 C 1.38955 * 119.99362 * 180.02562 * 14 13 11 17 17 N 1.31406 * 120.00245 * 359.71960 * 16 14 13 18 18 Si 1.86803 * 119.99625 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47085 * 89.99660 * 18 16 14 20 20 H 1.48497 * 109.46789 * 209.99669 * 18 16 14 21 21 H 1.48490 * 109.47245 * 329.99818 * 18 16 14 22 22 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46681 * 299.99663 * 1 2 3 24 24 H 1.09002 * 109.47382 * 59.99687 * 1 2 3 25 25 H 1.00899 * 111.00117 * 123.95384 * 2 1 3 26 26 H 1.08997 * 109.46798 * 60.00086 * 3 2 1 27 27 H 1.08998 * 109.47200 * 300.00271 * 3 2 1 28 28 H 1.09001 * 110.99231 * 37.80448 * 6 4 3 29 29 H 1.09004 * 111.01737 * 274.00630 * 6 4 3 30 30 H 1.09001 * 110.70337 * 205.96358 * 7 6 4 31 31 H 1.08997 * 110.85650 * 82.79822 * 7 6 4 32 32 H 1.09002 * 109.88824 * 262.87912 * 8 7 6 33 33 H 1.08999 * 110.02334 * 141.76733 * 8 7 6 34 34 H 1.09004 * 109.47549 * 309.87645 * 10 9 8 35 35 H 1.09005 * 109.47114 * 189.87721 * 10 9 8 36 36 H 0.96999 * 120.00044 * 359.97438 * 13 11 10 37 37 H 0.97000 * 120.00281 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5250 1.3307 -0.0006 5 1 3.8941 0.9269 -0.9433 6 6 4.1023 2.7474 0.2423 7 6 5.5036 2.4196 0.8216 8 6 5.2450 1.1499 1.6597 9 7 4.0187 0.5220 1.1343 10 6 4.2726 -0.8647 0.7216 11 6 4.5177 -1.7150 1.9414 12 8 4.4837 -1.2150 3.0460 13 7 4.7737 -3.0313 1.8050 14 6 4.9961 -3.8048 2.9149 15 1 4.9666 -3.3595 3.8983 16 6 5.2606 -5.1617 2.7742 17 7 5.2920 -5.7045 1.5779 18 14 5.5643 -6.2157 4.2863 19 1 4.2747 -6.7705 4.7701 20 1 6.4824 -7.3293 3.9370 21 1 6.1773 -5.3850 5.3536 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 1.8306 -0.5261 0.7813 26 1 1.6460 1.8947 0.8900 27 1 1.6459 1.8948 -0.8899 28 1 3.4992 3.2961 0.9657 29 1 4.1862 3.3010 -0.6930 30 1 5.8591 3.2330 1.4542 31 1 6.2160 2.2153 0.0223 32 1 5.1046 1.4189 2.7066 33 1 6.0846 0.4616 1.5632 34 1 5.1492 -0.8965 0.0744 35 1 3.4072 -1.2469 0.1801 36 1 4.7998 -3.4313 0.9218 37 1 5.4762 -6.6517 1.4797 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227728105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:15 Heat of formation + Delta-G solvation = -51.064336 kcal Electronic energy + Delta-G solvation = -17910.523813 eV Core-core repulsion = 15107.662328 eV Total energy + Delta-G solvation = -2802.861485 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.80570 -39.30260 -36.44526 -35.89650 -33.40033 -32.89940 -31.05731 -28.27235 -26.76052 -25.97698 -24.02824 -22.08473 -21.13018 -20.75363 -19.83102 -17.81349 -17.59312 -16.74589 -16.44926 -16.11541 -15.63442 -15.50645 -15.27905 -14.82022 -14.41670 -14.24002 -13.74600 -13.54853 -13.42476 -12.97415 -12.88690 -12.81780 -12.46652 -12.38680 -12.11521 -12.02323 -11.98173 -11.67460 -11.53465 -11.46918 -10.28419 -9.98773 -9.41681 -9.14946 -8.44758 -5.93454 1.38294 1.41343 1.54316 2.08261 2.29383 2.81190 3.21761 3.29998 3.41623 3.81912 3.89621 4.09551 4.25035 4.31613 4.38394 4.45271 4.52695 4.60905 4.64265 4.70990 4.77385 4.88449 4.95193 5.01666 5.03208 5.11674 5.22270 5.38541 5.41923 5.92190 6.02861 6.14869 6.24870 6.35438 6.63031 7.14917 7.58929 8.15072 8.72837 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.005977 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.559452 B = 4683.713530 C = 5306.097845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.710 5.710 3 C 0.079 3.921 4 C 0.067 3.933 5 H 0.065 0.935 6 C -0.111 4.111 7 C -0.133 4.133 8 C 0.054 3.946 9 N -0.521 5.521 10 C 0.053 3.947 11 C 0.443 3.557 12 O -0.616 6.616 13 N -0.575 5.575 14 C -0.332 4.332 15 H 0.078 0.922 16 C -0.014 4.014 17 N -0.921 5.921 18 Si 0.993 3.007 19 H -0.271 1.271 20 H -0.270 1.270 21 H -0.274 1.274 22 H 0.064 0.936 23 H 0.018 0.982 24 H 0.078 0.922 25 H 0.340 0.660 26 H 0.026 0.974 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.030 0.970 34 H 0.059 0.941 35 H 0.113 0.887 36 H 0.395 0.605 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.008 13.656 -7.388 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.342 5.342 3 C -0.051 4.051 4 C -0.041 4.041 5 H 0.083 0.917 6 C -0.150 4.150 7 C -0.172 4.172 8 C -0.073 4.073 9 N -0.246 5.246 10 C -0.078 4.078 11 C 0.230 3.770 12 O -0.502 6.502 13 N -0.213 5.213 14 C -0.461 4.461 15 H 0.096 0.904 16 C -0.213 4.213 17 N -0.562 5.562 18 Si 0.817 3.183 19 H -0.196 1.196 20 H -0.195 1.195 21 H -0.198 1.198 22 H 0.083 0.917 23 H 0.037 0.963 24 H 0.096 0.904 25 H 0.158 0.842 26 H 0.045 0.955 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.131 0.869 36 H 0.228 0.772 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.337 13.697 -7.009 15.985 hybrid contribution 0.653 -0.937 0.779 1.382 sum -3.684 12.760 -6.230 14.669 Atomic orbital electron populations 1.22210 0.87297 1.02012 1.00618 1.60612 1.08492 1.14852 1.50212 1.21972 0.93026 0.89450 1.00635 1.22794 0.95163 0.93803 0.92305 0.91684 1.22692 0.95092 0.94777 1.02394 1.22786 0.98003 0.96827 0.99544 1.22624 0.90029 0.95453 0.99236 1.63008 1.30122 1.00184 1.31309 1.22014 1.02387 0.89760 0.93655 1.20797 0.82077 0.82778 0.91353 1.90481 1.57331 1.73381 1.28970 1.41934 1.62866 1.07200 1.09298 1.19646 1.47085 0.91052 0.88349 0.90430 1.26032 0.96599 0.97737 1.00951 1.69678 1.49432 1.13918 1.23216 0.84932 0.78453 0.77500 0.77463 1.19649 1.19506 1.19844 0.91699 0.96312 0.90366 0.84158 0.95523 0.88893 0.90517 0.87962 0.89439 0.90573 0.92775 0.95150 0.92268 0.86871 0.77177 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.70 127.69 1.37 2.01 16 2 N -0.71 -19.45 5.99 -537.13 -3.22 -22.66 16 3 C 0.08 1.86 5.52 86.30 0.48 2.34 16 4 C 0.07 1.67 2.81 45.39 0.13 1.79 16 5 H 0.07 1.58 7.81 -2.39 -0.02 1.56 16 6 C -0.11 -2.14 6.50 31.98 0.21 -1.93 16 7 C -0.13 -2.94 6.94 31.77 0.22 -2.72 16 8 C 0.05 1.79 5.65 86.64 0.49 2.28 16 9 N -0.52 -17.44 4.07 -865.18 -3.52 -20.96 16 10 C 0.05 1.98 4.38 85.56 0.37 2.36 16 11 C 0.44 21.85 7.43 87.66 0.65 22.50 16 12 O -0.62 -34.95 15.12 -3.07 -0.05 -35.00 16 13 N -0.58 -30.49 5.29 -306.97 -1.62 -32.12 16 14 C -0.33 -19.28 9.68 84.04 0.81 -18.46 16 15 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 16 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 17 N -0.92 -50.75 13.05 21.66 0.28 -50.47 16 18 Si 0.99 43.75 29.55 68.60 2.03 45.78 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 24 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.34 11.26 6.39 -89.69 -0.57 10.69 16 26 H 0.03 0.67 8.03 -2.39 -0.02 0.65 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 1.47 7.97 -2.39 -0.02 1.45 16 29 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.03 1.11 7.31 -2.39 -0.02 1.09 16 34 H 0.06 2.05 7.96 -2.38 -0.02 2.03 16 35 H 0.11 3.96 5.94 -2.38 -0.01 3.95 16 36 H 0.39 20.06 7.90 -92.71 -0.73 19.33 16 37 H 0.28 14.27 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -66.64 299.39 -1.14 -67.78 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -0.24 Total: 37.76 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 5.19 Total: 9.89 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -8.08 Total: -126.20 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.05 Total: -35.00 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -66.64 -1.14 -67.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227728105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.711 kcal (2) G-P(sol) polarization free energy of solvation -66.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds