Wall clock time and date at job start Mon Mar 30 2020 04:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00254 * 2 1 4 4 H 1.48504 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47629 * 300.00339 * 3 2 1 6 6 H 1.48502 * 109.47042 * 60.00342 * 3 2 1 7 7 C 1.37879 * 119.99445 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47019 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46982 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46932 * 179.97438 * 11 10 9 13 13 C 1.46906 * 110.99546 * 179.97438 * 12 11 10 14 14 H 1.08993 * 109.47034 * 35.00320 * 13 12 11 15 15 C 1.53002 * 109.47255 * 274.99631 * 13 12 11 16 16 C 1.53000 * 109.47233 * 300.00730 * 15 13 12 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 13 18 18 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 19 19 C 1.52997 * 109.46770 * 155.00138 * 13 12 11 20 20 H 1.09002 * 109.47153 * 179.97438 * 19 13 12 21 21 C 1.53002 * 109.47143 * 299.99957 * 19 13 12 22 22 O 1.42903 * 109.47260 * 185.00153 * 21 19 13 23 23 H 0.97003 * 119.99674 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47589 * 60.00791 * 9 7 2 25 25 H 1.08999 * 109.47539 * 300.00099 * 9 7 2 26 26 H 1.08998 * 109.47405 * 60.00038 * 10 9 7 27 27 H 1.09000 * 109.47312 * 299.99877 * 10 9 7 28 28 H 1.08998 * 109.47134 * 59.99732 * 11 10 9 29 29 H 1.09000 * 109.46881 * 299.99999 * 11 10 9 30 30 H 1.00893 * 111.00155 * 303.95317 * 12 11 10 31 31 H 1.08992 * 109.47063 * 180.02562 * 15 13 12 32 32 H 1.09004 * 109.46733 * 60.00072 * 15 13 12 33 33 H 1.09002 * 109.47398 * 59.99826 * 16 15 13 34 34 H 1.09001 * 109.47194 * 180.02562 * 16 15 13 35 35 H 1.08996 * 109.47853 * 180.02562 * 17 16 15 36 36 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 37 37 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 39 39 H 1.09000 * 109.47173 * 304.99936 * 21 19 13 40 40 H 1.09000 * 109.47089 * 65.00013 * 21 19 13 41 41 H 0.96697 * 113.99823 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4346 -6.1037 -0.0018 13 6 1.7342 -7.3950 -0.0018 14 1 0.8208 -7.3129 -0.5909 15 6 1.3811 -7.7838 1.4353 16 6 2.6632 -7.8990 2.2621 17 6 3.5691 -8.9704 1.6519 18 6 3.9222 -8.5818 0.2149 19 6 2.6400 -8.4665 -0.6120 20 1 2.1205 -9.4247 -0.6116 21 6 2.9931 -8.0778 -2.0491 22 8 3.7418 -9.1321 -2.6574 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6245 -2.5571 0.8896 26 1 2.8718 -3.6045 0.8894 27 1 2.8718 -3.6044 -0.8905 28 1 0.8536 -5.0446 -0.8913 29 1 0.8531 -5.0451 0.8886 30 1 3.0694 -6.0363 -0.7831 31 1 0.8618 -8.7421 1.4353 32 1 0.7358 -7.0204 1.8700 33 1 3.1829 -6.9408 2.2622 34 1 2.4117 -8.1764 3.2858 35 1 4.4823 -9.0529 2.2412 36 1 3.0494 -9.9286 1.6519 37 1 4.5671 -9.3453 -0.2200 38 1 4.4418 -7.6236 0.2149 39 1 2.0772 -7.9090 -2.6154 40 1 3.5896 -7.1655 -2.0426 41 1 4.0001 -8.9539 -3.5721 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231042648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:31 Heat of formation + Delta-G solvation = -88.141871 kcal Electronic energy + Delta-G solvation = -17818.670805 eV Core-core repulsion = 15117.741861 eV Total energy + Delta-G solvation = -2700.928944 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.57463 -36.61899 -35.23434 -33.22981 -31.69947 -31.03429 -29.02341 -26.01032 -25.29230 -22.74954 -21.97182 -21.23707 -20.09326 -18.85678 -17.60605 -16.30381 -15.65021 -15.49999 -15.08863 -14.50252 -14.45748 -14.10626 -13.74542 -13.41229 -12.96022 -12.49744 -12.26489 -12.04567 -11.93800 -11.67041 -11.44071 -11.32283 -10.97287 -10.85733 -10.57877 -10.49867 -10.44778 -10.18301 -10.08017 -9.86564 -9.65665 -9.31235 -9.02379 -8.33675 -8.09366 -5.98685 -4.00599 3.31804 3.39226 3.43733 4.00809 4.36089 4.49359 4.64186 4.78831 4.92253 5.15722 5.21400 5.32048 5.37302 5.40669 5.47354 5.57253 5.60647 5.70088 5.79141 5.90962 5.93595 5.96361 6.06870 6.25686 6.30049 6.33296 6.34539 6.43331 6.62529 6.73834 6.82312 7.15412 7.39164 7.42721 7.66191 7.70434 7.85303 8.02069 8.45495 9.06967 9.63457 11.12835 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032070 B = 0.004314 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.893273 B = 6488.785988 C = 6823.514970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.682 5.682 13 C 0.092 3.908 14 H 0.041 0.959 15 C -0.104 4.104 16 C -0.112 4.112 17 C -0.115 4.115 18 C -0.104 4.104 19 C -0.086 4.086 20 H 0.077 0.923 21 C 0.074 3.926 22 O -0.572 6.572 23 H 0.259 0.741 24 H 0.013 0.987 25 H 0.016 0.984 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.022 0.978 29 H 0.067 0.933 30 H 0.335 0.665 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 -18.433 -1.421 19.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.070 4.070 12 N -0.315 5.315 13 C -0.018 4.018 14 H 0.059 0.941 15 C -0.142 4.142 16 C -0.149 4.149 17 C -0.153 4.153 18 C -0.141 4.141 19 C -0.105 4.105 20 H 0.096 0.904 21 C -0.004 4.004 22 O -0.377 6.377 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.154 0.846 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.976 -18.580 -0.150 19.236 hybrid contribution 0.008 1.271 -1.539 1.996 sum 4.984 -17.309 -1.689 18.092 Atomic orbital electron populations 1.69980 1.06067 1.26418 1.51169 1.25030 0.94837 0.99259 0.95405 0.86548 0.80150 0.83835 0.77548 1.19729 1.21075 1.21007 1.21299 0.93078 0.91067 1.50150 0.92648 1.19067 0.94032 0.91430 0.97070 1.21612 0.99128 0.93052 1.00605 1.22175 0.94150 0.90847 0.99800 1.60623 1.20216 1.00998 1.49709 1.21454 0.94797 0.89217 0.96306 0.94108 1.21480 0.97743 1.00355 0.94663 1.21411 0.96057 1.00148 0.97331 1.21491 0.99311 0.98362 0.96097 1.21420 0.96206 1.02057 0.94422 1.21290 0.97582 0.99181 0.92475 0.90426 1.22317 0.94463 0.89660 0.93923 1.86459 1.75628 1.44202 1.31396 0.93115 0.96887 0.96595 0.92554 0.93859 0.95986 0.91438 0.84555 0.92535 0.91754 0.90142 0.93117 0.92439 0.92900 0.92119 0.91064 0.93886 0.93209 0.77593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.19 5.41 -26.73 -0.14 -2.34 16 11 C 0.06 1.00 5.48 -3.82 -0.02 0.98 16 12 N -0.68 -9.62 4.82 -106.72 -0.51 -10.14 16 13 C 0.09 1.14 2.30 -67.71 -0.16 0.98 16 14 H 0.04 0.52 7.80 -51.93 -0.40 0.12 16 15 C -0.10 -1.25 5.53 -26.73 -0.15 -1.40 16 16 C -0.11 -1.31 5.77 -26.73 -0.15 -1.46 16 17 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 18 C -0.10 -1.16 4.94 -26.73 -0.13 -1.29 16 19 C -0.09 -0.96 2.20 -90.62 -0.20 -1.16 16 20 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 21 C 0.07 0.77 6.07 37.16 0.23 1.00 16 22 O -0.57 -5.81 13.19 -35.23 -0.46 -6.28 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 29 H 0.07 1.19 7.44 -51.93 -0.39 0.81 16 30 H 0.33 4.51 6.09 -39.30 -0.24 4.27 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.84 7.45 -51.93 -0.39 0.45 16 33 H 0.08 1.09 7.60 -51.93 -0.39 0.70 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.69 7.82 -51.93 -0.41 0.29 16 38 H 0.07 0.87 7.48 -51.93 -0.39 0.48 16 39 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.51 6.42 -51.93 -0.33 0.18 16 41 H 0.38 2.21 9.12 45.56 0.42 2.63 16 LS Contribution 318.08 15.07 4.79 4.79 Total: -1.00 -30.77 318.08 -8.62 -39.39 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.71 Total: 1.18 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -1.44 Total: -19.29 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.22 Total: -36.61 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.46 Total: -6.28 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.77 -8.62 -39.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231042648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.754 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds