Wall clock time and date at job start Mon Mar 30 2020 04:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00254 * 2 1 4 4 H 1.48504 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47629 * 300.00339 * 3 2 1 6 6 H 1.48502 * 109.47042 * 60.00342 * 3 2 1 7 7 C 1.37879 * 119.99445 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47019 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46982 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46932 * 179.97438 * 11 10 9 13 13 C 1.46906 * 110.99546 * 179.97438 * 12 11 10 14 14 H 1.08993 * 109.47034 * 35.00320 * 13 12 11 15 15 C 1.53002 * 109.47255 * 274.99631 * 13 12 11 16 16 C 1.53000 * 109.47233 * 300.00730 * 15 13 12 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 13 18 18 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 19 19 C 1.52997 * 109.46770 * 155.00138 * 13 12 11 20 20 H 1.09002 * 109.47153 * 179.97438 * 19 13 12 21 21 C 1.53002 * 109.47143 * 299.99957 * 19 13 12 22 22 O 1.42903 * 109.47260 * 185.00153 * 21 19 13 23 23 H 0.97003 * 119.99674 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47589 * 60.00791 * 9 7 2 25 25 H 1.08999 * 109.47539 * 300.00099 * 9 7 2 26 26 H 1.08998 * 109.47405 * 60.00038 * 10 9 7 27 27 H 1.09000 * 109.47312 * 299.99877 * 10 9 7 28 28 H 1.08998 * 109.47134 * 59.99732 * 11 10 9 29 29 H 1.09000 * 109.46881 * 299.99999 * 11 10 9 30 30 H 1.00893 * 111.00155 * 303.95317 * 12 11 10 31 31 H 1.08992 * 109.47063 * 180.02562 * 15 13 12 32 32 H 1.09004 * 109.46733 * 60.00072 * 15 13 12 33 33 H 1.09002 * 109.47398 * 59.99826 * 16 15 13 34 34 H 1.09001 * 109.47194 * 180.02562 * 16 15 13 35 35 H 1.08996 * 109.47853 * 180.02562 * 17 16 15 36 36 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 37 37 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 39 39 H 1.09000 * 109.47173 * 304.99936 * 21 19 13 40 40 H 1.09000 * 109.47089 * 65.00013 * 21 19 13 41 41 H 0.96697 * 113.99823 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4346 -6.1037 -0.0018 13 6 1.7342 -7.3950 -0.0018 14 1 0.8208 -7.3129 -0.5909 15 6 1.3811 -7.7838 1.4353 16 6 2.6632 -7.8990 2.2621 17 6 3.5691 -8.9704 1.6519 18 6 3.9222 -8.5818 0.2149 19 6 2.6400 -8.4665 -0.6120 20 1 2.1205 -9.4247 -0.6116 21 6 2.9931 -8.0778 -2.0491 22 8 3.7418 -9.1321 -2.6574 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6245 -2.5571 0.8896 26 1 2.8718 -3.6045 0.8894 27 1 2.8718 -3.6044 -0.8905 28 1 0.8536 -5.0446 -0.8913 29 1 0.8531 -5.0451 0.8886 30 1 3.0694 -6.0363 -0.7831 31 1 0.8618 -8.7421 1.4353 32 1 0.7358 -7.0204 1.8700 33 1 3.1829 -6.9408 2.2622 34 1 2.4117 -8.1764 3.2858 35 1 4.4823 -9.0529 2.2412 36 1 3.0494 -9.9286 1.6519 37 1 4.5671 -9.3453 -0.2200 38 1 4.4418 -7.6236 0.2149 39 1 2.0772 -7.9090 -2.6154 40 1 3.5896 -7.1655 -2.0426 41 1 4.0001 -8.9539 -3.5721 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231042648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:31 Heat of formation + Delta-G solvation = -108.701397 kcal Electronic energy + Delta-G solvation = -17819.562333 eV Core-core repulsion = 15117.741861 eV Total energy + Delta-G solvation = -2701.820472 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54504 -37.48552 -36.68435 -35.05488 -33.09810 -32.22296 -30.32489 -27.71225 -26.29110 -24.44275 -23.00781 -22.30017 -21.71080 -19.84891 -18.57197 -18.33918 -16.75871 -16.60350 -16.49935 -16.01776 -15.55023 -15.30564 -14.95870 -14.57485 -14.20714 -13.90028 -13.82085 -13.38457 -13.13057 -12.90897 -12.81819 -12.71525 -12.44767 -12.38018 -12.15295 -11.88280 -11.56741 -11.41466 -11.32973 -11.16244 -10.98368 -10.94698 -10.70728 -10.55951 -9.27684 -8.20420 -6.31313 1.39914 1.40297 1.53839 2.40949 3.12924 3.21991 3.25031 3.73220 3.87749 4.05797 4.24442 4.26162 4.34632 4.41214 4.43790 4.54366 4.60460 4.65127 4.72652 4.73405 4.81822 4.94925 4.99021 5.06816 5.09251 5.20615 5.26213 5.36685 5.39466 5.42430 5.49774 5.52820 5.70516 5.75772 5.86259 6.12095 6.28114 6.51756 6.86000 6.86787 7.38124 8.91771 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032070 B = 0.004314 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.893273 B = 6488.785988 C = 6823.514970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.091 4.091 11 C 0.074 3.926 12 N -0.678 5.678 13 C 0.094 3.906 14 H 0.039 0.961 15 C -0.106 4.106 16 C -0.109 4.109 17 C -0.112 4.112 18 C -0.099 4.099 19 C -0.082 4.082 20 H 0.082 0.918 21 C 0.076 3.924 22 O -0.584 6.584 23 H 0.263 0.737 24 H -0.010 1.010 25 H -0.010 1.010 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.021 0.979 29 H 0.060 0.940 30 H 0.341 0.659 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.272 -19.079 -1.690 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.129 4.129 11 C -0.055 4.055 12 N -0.312 5.312 13 C -0.016 4.016 14 H 0.057 0.943 15 C -0.144 4.144 16 C -0.147 4.147 17 C -0.149 4.149 18 C -0.137 4.137 19 C -0.101 4.101 20 H 0.100 0.900 21 C -0.002 4.002 22 O -0.392 6.392 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.008 0.992 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.161 0.839 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 6.134 -19.245 -0.435 20.204 hybrid contribution -0.364 1.428 -1.467 2.080 sum 5.770 -17.817 -1.902 18.824 Atomic orbital electron populations 1.70107 1.07818 1.27686 1.51868 1.25985 0.95764 1.03377 0.94728 0.85394 0.79076 0.78740 0.77810 1.18608 1.20291 1.20364 1.21729 0.93521 0.92421 1.50296 0.92286 1.18973 0.94440 0.93183 0.94675 1.21355 0.97934 0.92951 1.00615 1.21853 0.93990 0.90278 0.99422 1.60543 1.19611 1.00931 1.50115 1.21490 0.94875 0.88481 0.96774 0.94284 1.21503 0.97830 1.00740 0.94288 1.21366 0.95867 0.99500 0.97968 1.21471 0.99460 0.98302 0.95682 1.21369 0.96078 1.01438 0.94818 1.21230 0.97220 0.98662 0.92960 0.90011 1.22244 0.94712 0.89683 0.93559 1.86409 1.75581 1.44183 1.33026 0.92788 0.99124 0.99151 0.92974 0.93213 0.96109 0.92197 0.83903 0.90847 0.93202 0.92252 0.92274 0.91791 0.91862 0.92066 0.92178 0.93532 0.93260 0.75476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.02 1.33 4.97 29.85 0.15 1.48 16 10 C -0.09 -3.76 5.41 30.60 0.17 -3.60 16 11 C 0.07 2.52 5.48 86.30 0.47 2.99 16 12 N -0.68 -18.62 4.82 -491.55 -2.37 -20.99 16 13 C 0.09 2.19 2.30 44.91 0.10 2.30 16 14 H 0.04 0.95 7.80 -2.39 -0.02 0.93 16 15 C -0.11 -2.40 5.53 30.60 0.17 -2.23 16 16 C -0.11 -2.43 5.77 30.59 0.18 -2.25 16 17 C -0.11 -2.17 5.92 30.59 0.18 -1.99 16 18 C -0.10 -2.06 4.94 30.60 0.15 -1.91 16 19 C -0.08 -1.68 2.20 -10.79 -0.02 -1.70 16 20 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 21 C 0.08 1.45 6.07 71.98 0.44 1.89 16 22 O -0.58 -10.67 13.19 -148.98 -1.97 -12.63 16 23 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 26 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.02 0.72 8.06 -2.39 -0.02 0.70 16 29 H 0.06 2.14 7.44 -2.39 -0.02 2.13 16 30 H 0.34 8.78 6.09 -89.70 -0.55 8.23 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.27 7.45 -2.39 -0.02 1.26 16 33 H 0.06 1.57 7.60 -2.39 -0.02 1.55 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.28 7.82 -2.39 -0.02 1.26 16 38 H 0.06 1.38 7.48 -2.39 -0.02 1.36 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.05 0.94 6.42 -2.39 -0.02 0.92 16 41 H 0.40 3.82 9.12 -74.06 -0.68 3.15 16 Total: -1.00 -65.28 318.08 0.42 -64.86 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -0.23 Total: 14.97 kcal Atomic # 6 Polarization: -38.40 SS G_CDS: 2.68 Total: -35.72 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -2.09 Total: -78.17 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -1.97 Total: -12.63 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -65.28 0.42 -64.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231042648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.837 kcal (2) G-P(sol) polarization free energy of solvation -65.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds