Wall clock time and date at job start Mon Mar 30 2020 04:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00063 * 2 1 4 4 H 1.48494 * 109.46919 * 269.99724 * 3 2 1 5 5 H 1.48500 * 109.46840 * 30.00213 * 3 2 1 6 6 H 1.48497 * 109.46918 * 150.00174 * 3 2 1 7 7 C 1.37878 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00277 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99807 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47208 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47165 * 179.97438 * 11 10 9 13 13 C 1.46898 * 111.00190 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.47032 * 325.00096 * 13 12 11 15 15 C 1.52999 * 109.47222 * 84.99608 * 13 12 11 16 16 C 1.53006 * 109.46626 * 60.00385 * 15 13 12 17 17 C 1.52997 * 109.47164 * 59.99702 * 16 15 13 18 18 C 1.53002 * 109.47415 * 300.00027 * 17 16 15 19 19 C 1.52996 * 109.46972 * 59.99860 * 18 17 16 20 20 H 1.09000 * 109.47054 * 60.00300 * 19 18 17 21 21 C 1.53002 * 109.46969 * 180.02562 * 19 18 17 22 22 O 1.42907 * 109.46886 * 295.00051 * 21 19 18 23 23 H 0.97001 * 119.99910 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47073 * 59.99725 * 9 7 2 25 25 H 1.09002 * 109.47143 * 300.00324 * 9 7 2 26 26 H 1.08994 * 109.46759 * 59.99939 * 10 9 7 27 27 H 1.08995 * 109.46568 * 300.00247 * 10 9 7 28 28 H 1.09005 * 109.46909 * 60.00132 * 11 10 9 29 29 H 1.09002 * 109.47167 * 300.00182 * 11 10 9 30 30 H 1.00902 * 110.99732 * 56.04321 * 12 11 10 31 31 H 1.08993 * 109.47839 * 300.00454 * 15 13 12 32 32 H 1.09000 * 109.47160 * 180.02562 * 15 13 12 33 33 H 1.09001 * 109.46998 * 179.97438 * 16 15 13 34 34 H 1.09000 * 109.47050 * 299.99699 * 16 15 13 35 35 H 1.09000 * 109.47140 * 60.00051 * 17 16 15 36 36 H 1.09001 * 109.47230 * 179.97438 * 17 16 15 37 37 H 1.08992 * 109.46974 * 180.02562 * 18 17 16 38 38 H 1.08996 * 109.46550 * 300.00288 * 18 17 16 39 39 H 1.08994 * 109.47265 * 54.99878 * 21 19 18 40 40 H 1.09000 * 109.47089 * 175.00057 * 21 19 18 41 41 H 0.96703 * 113.99797 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 7 2.4348 -6.1037 0.0050 13 6 1.7345 -7.3950 0.0061 14 1 0.8215 -7.3127 0.5958 15 6 1.3802 -7.7843 -1.4305 16 6 2.6618 -7.8999 -2.2583 17 6 3.5681 -8.9710 -1.6483 18 6 3.9223 -8.5817 -0.2116 19 6 2.6408 -8.4661 0.6161 20 1 2.1212 -9.4243 0.6170 21 6 2.9950 -8.0762 2.0526 22 8 3.7445 -9.1298 2.6612 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5574 -0.8880 25 1 0.6247 -2.5562 0.8920 26 1 2.8718 -3.6035 0.8926 27 1 2.8719 -3.6051 -0.8873 28 1 0.8533 -5.0459 -0.8852 29 1 0.8538 -5.0438 0.8948 30 1 3.0703 -6.0358 0.7858 31 1 0.7346 -7.0213 -1.8651 32 1 0.8602 -8.7423 -1.4296 33 1 2.4095 -8.1777 -3.2817 34 1 3.1814 -6.9417 -2.2591 35 1 3.0485 -9.9292 -1.6474 36 1 4.4809 -9.0537 -2.2382 37 1 4.5683 -9.3445 0.2227 38 1 4.4419 -7.6235 -0.2126 39 1 3.5912 -7.1638 2.0449 40 1 2.0794 -7.9072 2.6195 41 1 4.0035 -8.9509 3.5755 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231042658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:37 Heat of formation + Delta-G solvation = -108.643183 kcal Electronic energy + Delta-G solvation = -17819.641135 eV Core-core repulsion = 15117.823188 eV Total energy + Delta-G solvation = -2701.817948 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54579 -37.48481 -36.68373 -35.05394 -33.09804 -32.22329 -30.32473 -27.71100 -26.29131 -24.44156 -23.00807 -22.30023 -21.71076 -19.84895 -18.56980 -18.33718 -16.75911 -16.60380 -16.50111 -16.01811 -15.55010 -15.30601 -14.95776 -14.57097 -14.20116 -13.90237 -13.82110 -13.38806 -13.12741 -12.90682 -12.81160 -12.71044 -12.44280 -12.37934 -12.17341 -11.88331 -11.56326 -11.41457 -11.33100 -11.17012 -10.98391 -10.94873 -10.70764 -10.55293 -9.27730 -8.20131 -6.31163 1.40110 1.41579 1.52660 2.41075 3.13120 3.21990 3.25020 3.73193 3.87732 4.05760 4.24420 4.26161 4.34614 4.41193 4.43784 4.54355 4.60429 4.65103 4.72637 4.73404 4.81780 4.94899 4.98985 5.06819 5.09243 5.20609 5.26260 5.36662 5.39450 5.42469 5.49752 5.52687 5.70517 5.75792 5.86249 6.12124 6.28151 6.51696 6.85941 6.86729 7.38229 8.91831 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032069 B = 0.004314 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.920222 B = 6488.440386 C = 6823.295553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.091 4.091 11 C 0.074 3.926 12 N -0.678 5.678 13 C 0.094 3.906 14 H 0.039 0.961 15 C -0.106 4.106 16 C -0.109 4.109 17 C -0.112 4.112 18 C -0.099 4.099 19 C -0.082 4.082 20 H 0.082 0.918 21 C 0.076 3.924 22 O -0.584 6.584 23 H 0.263 0.737 24 H -0.010 1.010 25 H -0.010 1.010 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.021 0.979 30 H 0.340 0.660 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.046 0.954 41 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.278 -19.069 1.701 20.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.129 4.129 11 C -0.055 4.055 12 N -0.312 5.312 13 C -0.016 4.016 14 H 0.057 0.943 15 C -0.144 4.144 16 C -0.147 4.147 17 C -0.149 4.149 18 C -0.137 4.137 19 C -0.101 4.101 20 H 0.100 0.900 21 C -0.002 4.002 22 O -0.392 6.392 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.009 0.991 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.161 0.839 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 6.135 -19.234 0.449 20.194 hybrid contribution -0.354 1.426 1.458 2.070 sum 5.781 -17.808 1.907 18.820 Atomic orbital electron populations 1.70098 1.07824 1.27754 1.51790 1.25984 0.95759 1.03370 0.94709 0.85447 0.78678 0.78415 0.78513 1.19794 1.20676 1.18717 1.21700 0.93521 0.92426 1.50427 0.92276 1.18971 0.94434 0.93175 0.94663 1.21353 0.97937 0.92949 1.00615 1.21853 0.93993 0.90279 0.99420 1.60545 1.19570 1.00929 1.50153 1.21489 0.94874 0.88483 0.96773 0.94288 1.21503 0.97825 1.00744 0.94292 1.21367 0.95867 0.99503 0.97963 1.21472 0.99456 0.98302 0.95685 1.21365 0.96076 1.01443 0.94817 1.21228 0.97213 0.98663 0.92960 0.90006 1.22245 0.94701 0.89695 0.93560 1.86411 1.75527 1.44196 1.33065 0.92783 0.99161 0.99141 0.93218 0.92963 0.92206 0.96103 0.83904 0.93209 0.90847 0.92274 0.92251 0.91861 0.91790 0.92065 0.92182 0.93260 0.93531 0.75476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.35 4.97 29.85 0.15 1.50 16 10 C -0.09 -3.76 5.41 30.60 0.17 -3.60 16 11 C 0.07 2.52 5.48 86.30 0.47 2.99 16 12 N -0.68 -18.62 4.82 -491.57 -2.37 -20.99 16 13 C 0.09 2.19 2.30 44.91 0.10 2.30 16 14 H 0.04 0.95 7.80 -2.39 -0.02 0.93 16 15 C -0.11 -2.40 5.53 30.60 0.17 -2.23 16 16 C -0.11 -2.43 5.77 30.60 0.18 -2.25 16 17 C -0.11 -2.17 5.92 30.59 0.18 -1.99 16 18 C -0.10 -2.06 4.94 30.59 0.15 -1.91 16 19 C -0.08 -1.68 2.20 -10.80 -0.02 -1.70 16 20 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 21 C 0.08 1.45 6.07 71.98 0.44 1.88 16 22 O -0.58 -10.67 13.20 -148.98 -1.97 -12.64 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 24 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 25 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.06 2.14 7.43 -2.38 -0.02 2.12 16 29 H 0.02 0.72 8.06 -2.39 -0.02 0.70 16 30 H 0.34 8.78 6.09 -89.69 -0.55 8.23 16 31 H 0.05 1.27 7.45 -2.39 -0.02 1.25 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.57 7.60 -2.39 -0.02 1.55 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.28 7.82 -2.39 -0.02 1.26 16 38 H 0.06 1.38 7.48 -2.39 -0.02 1.36 16 39 H 0.05 0.94 6.42 -2.39 -0.02 0.92 16 40 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.40 3.82 9.12 -74.06 -0.68 3.15 16 Total: -1.00 -65.25 318.08 0.42 -64.83 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -0.23 Total: 15.09 kcal Atomic # 6 Polarization: -38.42 SS G_CDS: 2.68 Total: -35.74 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -2.09 Total: -78.20 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -1.97 Total: -12.64 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -65.25 0.42 -64.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231042658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.809 kcal (2) G-P(sol) polarization free energy of solvation -65.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds