Wall clock time and date at job start Mon Mar 30 2020 04:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00243 * 2 1 4 4 C 1.50701 * 109.46921 * 293.95400 * 3 2 1 5 5 O 1.21294 * 119.99849 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.37101 * 119.99707 * 180.02562 * 6 4 3 8 8 H 1.08002 * 119.99704 * 359.97438 * 7 6 4 9 9 C 1.38941 * 119.99927 * 180.02562 * 7 6 4 10 10 N 1.31417 * 120.00180 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00273 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47268 * 89.99721 * 11 9 7 13 13 H 1.48498 * 109.47211 * 209.99980 * 11 9 7 14 14 H 1.48505 * 109.46734 * 329.99774 * 11 9 7 15 15 C 1.46906 * 111.00136 * 123.95472 * 2 1 3 16 16 C 1.53003 * 109.47132 * 66.04414 * 15 2 1 17 17 H 1.08998 * 109.87456 * 295.42230 * 16 15 2 18 18 C 1.54314 * 109.88566 * 174.22633 * 16 15 2 19 19 C 1.55143 * 103.01691 * 218.31282 * 18 16 15 20 20 C 1.54907 * 101.65549 * 35.65045 * 19 18 16 21 21 N 1.47444 * 109.88793 * 56.45417 * 16 15 2 22 22 H 1.08999 * 109.47439 * 60.00146 * 1 2 3 23 23 H 1.08997 * 109.47257 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46808 * 299.99830 * 1 2 3 25 25 H 1.09002 * 109.47401 * 173.95428 * 3 2 1 26 26 H 1.09001 * 109.46874 * 53.95440 * 3 2 1 27 27 H 0.96995 * 120.00011 * 0.02562 * 6 4 3 28 28 H 0.97000 * 119.99884 * 180.02562 * 10 9 7 29 29 H 1.09000 * 109.47257 * 186.04513 * 15 2 1 30 30 H 1.09006 * 109.46871 * 306.04551 * 15 2 1 31 31 H 1.09005 * 110.70912 * 336.68991 * 18 16 15 32 32 H 1.08997 * 110.70984 * 99.93070 * 18 16 15 33 33 H 1.09001 * 110.98853 * 277.56322 * 19 18 16 34 34 H 1.08998 * 111.02501 * 153.76366 * 19 18 16 35 35 H 1.08994 * 110.37582 * 204.10265 * 20 19 18 36 36 H 1.08997 * 110.36904 * 81.75865 * 20 19 18 37 37 H 1.00899 * 111.00052 * 240.68632 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0046 1.4455 -2.1408 6 7 2.0181 3.3202 -1.5233 7 6 1.6914 3.9350 -2.7044 8 1 1.1291 3.3990 -3.4547 9 6 2.0848 5.2472 -2.9365 10 7 2.7694 5.8992 -2.0237 11 14 1.6392 6.0853 -4.5454 12 1 0.3271 6.7659 -4.4022 13 1 2.6814 7.0863 -4.8873 14 1 1.5548 5.0698 -5.6256 15 6 1.9954 -0.7660 1.1376 16 6 1.6314 -2.2427 0.9704 17 1 0.5491 -2.3646 1.0129 18 6 2.3013 -3.0776 2.0819 19 6 2.7184 -4.3752 1.3409 20 6 3.1111 -3.8269 -0.0536 21 7 2.1423 -2.7422 -0.3194 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 3.0797 1.3444 0.1082 26 1 1.5611 1.9273 0.8309 27 1 2.5234 3.8013 -0.8496 28 1 3.0437 6.8154 -2.1856 29 1 3.0797 -0.6611 1.1756 30 1 1.5611 -0.3872 2.0628 31 1 3.1763 -2.5615 2.4773 32 1 1.5910 -3.2998 2.8782 33 1 1.8806 -5.0685 1.2660 34 1 3.5709 -4.8475 1.8291 35 1 3.0217 -4.6087 -0.8078 36 1 4.1268 -3.4320 -0.0337 37 1 1.3880 -3.0667 -0.9058 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234288994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:17 Heat of formation + Delta-G solvation = -25.241423 kcal Electronic energy + Delta-G solvation = -17499.735945 eV Core-core repulsion = 14697.994226 eV Total energy + Delta-G solvation = -2801.741719 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.07419 -38.11292 -35.81556 -33.73169 -31.14997 -30.18364 -30.03780 -27.62003 -26.01737 -24.47165 -22.17373 -21.13298 -19.65386 -19.00018 -17.73093 -17.00162 -15.94841 -15.47075 -14.91480 -14.57095 -14.46224 -13.84997 -13.57278 -13.44981 -13.31886 -12.87332 -12.38563 -11.95620 -11.73884 -11.50582 -11.27920 -11.22218 -11.21004 -11.13290 -10.94104 -10.75004 -10.63042 -10.32817 -10.13496 -9.38629 -8.37079 -8.17210 -7.86718 -7.59217 -6.33190 -3.73453 3.23471 3.31326 3.37840 4.02510 4.05118 4.24144 4.40317 4.57776 4.73394 4.93431 5.17089 5.22526 5.32906 5.37632 5.44352 5.58547 5.65095 5.67459 5.77868 5.79352 5.86778 5.91392 6.01889 6.09810 6.15567 6.20279 6.41240 6.67882 7.02010 7.49514 7.54006 7.62825 7.66693 8.16578 8.72657 9.27763 9.65372 10.18353 10.84952 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.052779 B = 0.004326 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.383418 B = 6471.277989 C = 6554.324955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.500 5.500 3 C 0.047 3.953 4 C 0.448 3.552 5 O -0.575 6.575 6 N -0.569 5.569 7 C -0.296 4.296 8 H 0.102 0.898 9 C 0.020 3.980 10 N -0.905 5.905 11 Si 0.929 3.071 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.071 3.929 16 C 0.084 3.916 17 H 0.058 0.942 18 C -0.136 4.136 19 C -0.155 4.155 20 C 0.047 3.953 21 N -0.658 5.658 22 H 0.094 0.906 23 H 0.054 0.946 24 H 0.008 0.992 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.391 0.609 28 H 0.270 0.730 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 -15.110 9.545 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.224 5.224 3 C -0.085 4.085 4 C 0.234 3.766 5 O -0.458 6.458 6 N -0.206 5.206 7 C -0.425 4.425 8 H 0.120 0.880 9 C -0.181 4.181 10 N -0.547 5.547 11 Si 0.756 3.244 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.059 4.059 16 C -0.027 4.027 17 H 0.077 0.923 18 C -0.175 4.175 19 C -0.194 4.194 20 C -0.082 4.082 21 N -0.286 5.286 22 H 0.112 0.888 23 H 0.073 0.927 24 H 0.027 0.973 25 H 0.104 0.896 26 H 0.060 0.940 27 H 0.224 0.776 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.143 -15.019 8.416 17.217 hybrid contribution -0.678 0.503 0.774 1.145 sum -0.535 -14.516 9.190 17.189 Atomic orbital electron populations 1.22539 0.87567 1.00837 1.01529 1.61458 1.07682 1.11882 1.41335 1.21861 1.00622 0.89271 0.96722 1.19787 0.85103 0.82764 0.88984 1.90474 1.43667 1.64586 1.47118 1.41873 1.49789 1.10851 1.18063 1.19694 1.32646 0.95392 0.94792 0.87986 1.25234 0.96977 0.96681 0.99165 1.69619 1.38411 1.12145 1.34477 0.85875 0.77924 0.78895 0.81690 1.20536 1.21006 1.19432 1.22180 1.00183 0.92609 0.90882 1.22160 0.97592 0.94490 0.88416 0.92336 1.22821 1.00939 0.95881 0.97860 1.23164 1.01207 0.97318 0.97727 1.22904 0.98072 0.92460 0.94782 1.61378 1.18622 1.34523 1.14082 0.88766 0.92715 0.97341 0.89595 0.94009 0.77577 0.92013 0.90899 0.95632 0.90802 0.91323 0.91761 0.91024 0.91863 0.90748 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.02 60.06 0.54 0.94 16 2 N -0.50 -8.87 4.27 -244.36 -1.04 -9.92 16 3 C 0.05 0.89 5.45 -4.97 -0.03 0.87 16 4 C 0.45 11.03 7.51 -10.98 -0.08 10.94 16 5 O -0.57 -15.98 13.88 5.55 0.08 -15.90 16 6 N -0.57 -14.91 5.29 -10.96 -0.06 -14.97 16 7 C -0.30 -8.45 9.68 -14.94 -0.14 -8.60 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 9 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 10 N -0.90 -25.20 13.05 55.50 0.72 -24.47 16 11 Si 0.93 21.52 29.55 -169.99 -5.02 16.49 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 C 0.07 0.99 4.56 -3.82 -0.02 0.97 16 16 C 0.08 1.01 3.13 -66.72 -0.21 0.80 16 17 H 0.06 0.69 6.72 -51.93 -0.35 0.34 16 18 C -0.14 -1.29 6.47 -24.91 -0.16 -1.45 16 19 C -0.16 -1.34 7.08 -24.59 -0.17 -1.51 16 20 C 0.05 0.49 7.57 -2.30 -0.02 0.47 16 21 N -0.66 -8.55 6.79 -103.82 -0.71 -9.25 16 22 H 0.09 1.95 5.88 -51.93 -0.31 1.65 16 23 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16 24 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 25 H 0.09 1.53 7.93 -51.93 -0.41 1.12 16 26 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 27 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 30 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 31 H 0.07 0.70 7.79 -51.93 -0.40 0.29 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.34 4.26 8.91 -39.29 -0.35 3.91 16 LS Contribution 300.05 15.07 4.52 4.52 Total: -1.00 -31.56 300.05 -7.67 -39.23 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -5.77 Total: 10.37 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -0.39 Total: 3.90 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -1.08 Total: -58.61 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.08 Total: -15.90 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.56 -7.67 -39.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234288994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.991 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds