Wall clock time and date at job start Mon Mar 30 2020 04:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00243 * 2 1 4 4 C 1.50701 * 109.46921 * 293.95400 * 3 2 1 5 5 O 1.21294 * 119.99849 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.37101 * 119.99707 * 180.02562 * 6 4 3 8 8 H 1.08002 * 119.99704 * 359.97438 * 7 6 4 9 9 C 1.38941 * 119.99927 * 180.02562 * 7 6 4 10 10 N 1.31417 * 120.00180 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00273 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47268 * 89.99721 * 11 9 7 13 13 H 1.48498 * 109.47211 * 209.99980 * 11 9 7 14 14 H 1.48505 * 109.46734 * 329.99774 * 11 9 7 15 15 C 1.46906 * 111.00136 * 123.95472 * 2 1 3 16 16 C 1.53003 * 109.47132 * 66.04414 * 15 2 1 17 17 H 1.08998 * 109.87456 * 295.42230 * 16 15 2 18 18 C 1.54314 * 109.88566 * 174.22633 * 16 15 2 19 19 C 1.55143 * 103.01691 * 218.31282 * 18 16 15 20 20 C 1.54907 * 101.65549 * 35.65045 * 19 18 16 21 21 N 1.47444 * 109.88793 * 56.45417 * 16 15 2 22 22 H 1.08999 * 109.47439 * 60.00146 * 1 2 3 23 23 H 1.08997 * 109.47257 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46808 * 299.99830 * 1 2 3 25 25 H 1.09002 * 109.47401 * 173.95428 * 3 2 1 26 26 H 1.09001 * 109.46874 * 53.95440 * 3 2 1 27 27 H 0.96995 * 120.00011 * 0.02562 * 6 4 3 28 28 H 0.97000 * 119.99884 * 180.02562 * 10 9 7 29 29 H 1.09000 * 109.47257 * 186.04513 * 15 2 1 30 30 H 1.09006 * 109.46871 * 306.04551 * 15 2 1 31 31 H 1.09005 * 110.70912 * 336.68991 * 18 16 15 32 32 H 1.08997 * 110.70984 * 99.93070 * 18 16 15 33 33 H 1.09001 * 110.98853 * 277.56322 * 19 18 16 34 34 H 1.08998 * 111.02501 * 153.76366 * 19 18 16 35 35 H 1.08994 * 110.37582 * 204.10265 * 20 19 18 36 36 H 1.08997 * 110.36904 * 81.75865 * 20 19 18 37 37 H 1.00899 * 111.00052 * 240.68632 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0046 1.4455 -2.1408 6 7 2.0181 3.3202 -1.5233 7 6 1.6914 3.9350 -2.7044 8 1 1.1291 3.3990 -3.4547 9 6 2.0848 5.2472 -2.9365 10 7 2.7694 5.8992 -2.0237 11 14 1.6392 6.0853 -4.5454 12 1 0.3271 6.7659 -4.4022 13 1 2.6814 7.0863 -4.8873 14 1 1.5548 5.0698 -5.6256 15 6 1.9954 -0.7660 1.1376 16 6 1.6314 -2.2427 0.9704 17 1 0.5491 -2.3646 1.0129 18 6 2.3013 -3.0776 2.0819 19 6 2.7184 -4.3752 1.3409 20 6 3.1111 -3.8269 -0.0536 21 7 2.1423 -2.7422 -0.3194 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 3.0797 1.3444 0.1082 26 1 1.5611 1.9273 0.8309 27 1 2.5234 3.8013 -0.8496 28 1 3.0437 6.8154 -2.1856 29 1 3.0797 -0.6611 1.1756 30 1 1.5611 -0.3872 2.0628 31 1 3.1763 -2.5615 2.4773 32 1 1.5910 -3.2998 2.8782 33 1 1.8806 -5.0685 1.2660 34 1 3.5709 -4.8475 1.8291 35 1 3.0217 -4.6087 -0.8078 36 1 4.1268 -3.4320 -0.0337 37 1 1.3880 -3.0667 -0.9058 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234288994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:17 Heat of formation + Delta-G solvation = -50.107263 kcal Electronic energy + Delta-G solvation = -17500.814209 eV Core-core repulsion = 14697.994226 eV Total energy + Delta-G solvation = -2802.819983 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.43887 -39.56015 -37.23247 -35.79010 -33.24493 -31.26056 -30.86039 -29.16846 -27.33154 -26.26467 -23.46674 -21.93635 -20.90243 -20.64493 -19.81060 -17.93567 -17.69073 -16.65499 -16.52447 -16.20241 -15.89603 -15.48429 -15.07586 -14.95722 -14.24955 -14.06622 -13.76756 -13.45708 -13.32778 -12.98007 -12.64558 -12.59025 -12.49205 -12.39139 -12.15202 -12.07963 -11.92869 -11.79716 -11.50926 -11.42583 -10.22461 -9.96565 -9.19800 -8.97132 -8.43634 -5.92153 1.39423 1.42308 1.55662 2.10125 2.30903 2.84141 3.23172 3.34488 3.53701 3.81415 3.86749 4.17105 4.25341 4.32762 4.39005 4.48003 4.55883 4.62168 4.66603 4.68358 4.78817 4.87805 4.91561 5.01100 5.10345 5.15620 5.23740 5.41312 5.43502 5.94629 6.12036 6.17330 6.43525 6.62182 6.65071 7.16613 7.60621 8.17381 8.74107 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.052779 B = 0.004326 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.383418 B = 6471.277989 C = 6554.324955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.520 5.520 3 C 0.058 3.942 4 C 0.444 3.556 5 O -0.611 6.611 6 N -0.578 5.578 7 C -0.331 4.331 8 H 0.078 0.922 9 C -0.014 4.014 10 N -0.923 5.923 11 Si 0.993 3.007 12 H -0.271 1.271 13 H -0.271 1.271 14 H -0.273 1.273 15 C 0.072 3.928 16 C 0.084 3.916 17 H 0.061 0.939 18 C -0.131 4.131 19 C -0.146 4.146 20 C 0.045 3.955 21 N -0.685 5.685 22 H 0.052 0.948 23 H 0.075 0.925 24 H 0.022 0.978 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.395 0.605 28 H 0.277 0.723 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.085 -15.743 10.686 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.243 5.243 3 C -0.073 4.073 4 C 0.231 3.769 5 O -0.497 6.497 6 N -0.215 5.215 7 C -0.461 4.461 8 H 0.096 0.904 9 C -0.214 4.214 10 N -0.564 5.564 11 Si 0.817 3.183 12 H -0.196 1.196 13 H -0.195 1.195 14 H -0.198 1.198 15 C -0.057 4.057 16 C -0.027 4.027 17 H 0.079 0.921 18 C -0.170 4.170 19 C -0.184 4.184 20 C -0.084 4.084 21 N -0.313 5.313 22 H 0.071 0.929 23 H 0.094 0.906 24 H 0.040 0.960 25 H 0.120 0.880 26 H 0.080 0.920 27 H 0.228 0.772 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.386 -15.661 9.591 18.369 hybrid contribution -0.741 0.659 0.431 1.081 sum -0.355 -15.002 10.022 18.045 Atomic orbital electron populations 1.22383 0.87506 1.01769 1.00053 1.61420 1.07957 1.11094 1.43876 1.21727 1.01695 0.90120 0.93761 1.20793 0.83539 0.82115 0.90430 1.90452 1.44961 1.65296 1.48998 1.41946 1.50307 1.11609 1.17672 1.19662 1.34288 0.96419 0.95712 0.90394 1.26032 0.96308 0.96601 1.02419 1.69682 1.38334 1.12605 1.35825 0.84926 0.78231 0.77764 0.77394 1.19598 1.19529 1.19820 1.22284 0.99954 0.93374 0.90052 1.22171 0.97960 0.93484 0.89057 0.92114 1.22800 1.01132 0.95652 0.97382 1.23109 1.02011 0.97070 0.96254 1.22919 0.96937 0.92134 0.96413 1.61345 1.19119 1.35956 1.14902 0.92913 0.90607 0.95956 0.88036 0.92020 0.77162 0.91377 0.91108 0.93961 0.90714 0.89701 0.90949 0.89595 0.90974 0.91762 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 9.02 127.69 1.15 2.20 16 2 N -0.52 -17.95 4.27 -927.03 -3.96 -21.92 16 3 C 0.06 2.19 5.45 85.56 0.47 2.66 16 4 C 0.44 22.25 7.51 87.66 0.66 22.91 16 5 O -0.61 -35.13 13.88 -3.07 -0.04 -35.17 16 6 N -0.58 -30.91 5.29 -306.98 -1.62 -32.53 16 7 C -0.33 -19.41 9.68 84.04 0.81 -18.60 16 8 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 9 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 10 N -0.92 -51.11 13.05 21.66 0.28 -50.82 16 11 Si 0.99 44.00 29.55 68.60 2.03 46.03 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 C 0.07 1.86 4.56 86.30 0.39 2.25 16 16 C 0.08 1.84 3.13 45.26 0.14 1.98 16 17 H 0.06 1.30 6.72 -2.39 -0.02 1.28 16 18 C -0.13 -2.10 6.47 31.77 0.21 -1.90 16 19 C -0.15 -2.12 7.08 31.98 0.23 -1.89 16 20 C 0.05 0.87 7.57 86.77 0.66 1.53 16 21 N -0.68 -17.04 6.79 -482.37 -3.28 -20.32 16 22 H 0.05 2.23 5.88 -2.39 -0.01 2.22 16 23 H 0.08 2.18 6.40 -2.39 -0.02 2.16 16 24 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 25 H 0.10 3.49 7.93 -2.39 -0.02 3.47 16 26 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 27 H 0.39 20.11 7.90 -92.71 -0.73 19.38 16 28 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.07 1.86 7.85 -2.39 -0.02 1.84 16 30 H 0.04 0.97 8.12 -2.38 -0.02 0.95 16 31 H 0.07 1.20 7.79 -2.38 -0.02 1.18 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.34 8.28 8.91 -89.69 -0.80 7.48 16 Total: -1.00 -68.37 300.05 -1.87 -70.25 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: -0.46 Total: 33.69 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 5.18 Total: 10.80 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -8.58 Total: -125.59 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.04 Total: -35.17 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -68.37 -1.87 -70.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234288994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.139 kcal (2) G-P(sol) polarization free energy of solvation -68.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds