Wall clock time and date at job start Mon Mar 30 2020 03:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46954 * 110.99881 * 66.04958 * 12 11 10 14 14 C 1.53052 * 109.36650 * 183.18585 * 13 12 11 15 15 N 1.46958 * 109.36142 * 301.59911 * 14 13 12 16 16 C 1.46954 * 110.88119 * 59.31954 * 15 14 13 17 17 H 1.09003 * 109.49318 * 60.66833 * 16 15 14 18 18 C 1.50703 * 109.48837 * 180.70890 * 16 15 14 19 19 N 1.34778 * 119.99884 * 199.99568 * 18 16 15 20 20 O 1.21275 * 119.99978 * 20.00123 * 18 16 15 21 21 C 1.46958 * 110.99672 * 189.84692 * 12 11 10 22 22 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 24 24 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 25 25 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 26 26 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 28 28 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 29 29 H 1.08996 * 109.49398 * 303.15172 * 13 12 11 30 30 H 1.09005 * 109.48821 * 63.20072 * 13 12 11 31 31 H 1.09002 * 109.48725 * 61.56066 * 14 13 12 32 32 H 1.08995 * 109.49296 * 181.61508 * 14 13 12 33 33 H 1.00905 * 110.99862 * 183.18666 * 15 14 13 34 34 H 0.97000 * 119.99946 * 0.02562 * 19 18 16 35 35 H 0.97004 * 120.00161 * 179.97438 * 19 18 16 36 36 H 1.09003 * 109.49103 * 296.77480 * 21 12 11 37 37 H 1.08996 * 109.49247 * 56.84655 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 3.2011 -6.1419 1.2515 14 6 4.2364 -7.2669 1.1791 15 7 3.5510 -8.5455 0.9450 16 6 2.7845 -8.5073 -0.3082 17 1 3.4614 -8.3258 -1.1431 18 6 2.0817 -9.8253 -0.5082 19 7 1.6589 -10.1839 -1.7367 20 8 1.8965 -10.5632 0.4363 21 6 1.7492 -7.3823 -0.2358 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8725 -3.6048 0.8878 26 1 2.8712 -3.6040 -0.8921 27 1 0.8543 -5.0449 0.8894 28 1 0.8525 -5.0447 -0.8905 29 1 3.7095 -5.1887 1.3962 30 1 2.5242 -6.3235 2.0863 31 1 4.9297 -7.0709 0.3611 32 1 4.7868 -7.3157 2.1186 33 1 4.2066 -9.3125 0.9447 34 1 1.8073 -9.5939 -2.4921 35 1 1.2069 -11.0325 -1.8655 36 1 1.0559 -7.5784 0.5821 37 1 1.1991 -7.3334 -1.1755 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238562919.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:39 Heat of formation + Delta-G solvation = -42.006991 kcal Electronic energy + Delta-G solvation = -17327.227180 eV Core-core repulsion = 14524.758451 eV Total energy + Delta-G solvation = -2802.468729 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.17471 -38.31893 -35.17415 -33.91829 -33.27110 -31.28681 -30.92311 -27.27027 -25.35645 -24.06790 -22.56171 -21.04924 -19.84621 -19.75268 -17.86203 -16.99793 -16.40212 -16.16223 -15.35433 -14.84130 -14.63295 -14.49074 -14.29535 -14.01473 -13.79470 -13.24044 -12.82982 -12.28246 -11.73995 -11.63755 -11.41736 -11.23763 -10.91367 -10.81127 -10.54874 -10.49832 -10.02987 -9.92459 -9.61309 -9.33318 -9.06118 -8.65255 -8.33940 -8.15805 -5.99244 -4.01352 2.39391 3.14314 3.32459 3.38672 3.42093 3.98208 4.12850 4.47240 4.67825 4.77981 4.94041 5.10926 5.29067 5.36728 5.38450 5.49590 5.69381 5.76177 5.89372 5.98596 6.06972 6.28524 6.49342 6.66337 6.69517 6.71457 7.03288 7.08542 7.15874 7.26821 7.33830 7.68638 7.83293 8.01085 8.05243 8.44167 9.05842 9.62688 11.12233 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049521 B = 0.004006 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.285113 B = 6988.566206 C = 7319.409088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.104 4.104 11 C 0.056 3.944 12 N -0.538 5.538 13 C 0.050 3.950 14 C 0.062 3.938 15 N -0.670 5.670 16 C 0.074 3.926 17 H 0.069 0.931 18 C 0.521 3.479 19 N -0.857 5.857 20 O -0.525 6.525 21 C 0.067 3.933 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.014 0.986 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.346 0.654 34 H 0.403 0.597 35 H 0.401 0.599 36 H 0.046 0.954 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.924 -17.861 -3.341 19.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.071 4.071 12 N -0.262 5.262 13 C -0.079 4.079 14 C -0.067 4.067 15 N -0.303 5.303 16 C -0.039 4.039 17 H 0.086 0.914 18 C 0.304 3.696 19 N -0.421 5.421 20 O -0.399 6.399 21 C -0.062 4.062 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.032 0.968 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.164 0.836 34 H 0.231 0.769 35 H 0.232 0.768 36 H 0.064 0.936 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.533 -17.847 -2.578 18.862 hybrid contribution 0.387 0.714 -0.519 0.964 sum 5.920 -17.132 -3.097 18.389 Atomic orbital electron populations 1.69969 1.06067 1.26559 1.51000 1.25028 0.94839 0.99253 0.95379 0.86600 0.79853 0.83495 0.78086 1.20677 1.21260 1.19874 1.21244 0.93033 0.91028 1.50376 0.92683 1.19077 0.94041 0.91386 0.97129 1.21651 0.99165 0.92573 1.00788 1.22312 0.93624 0.90670 1.00458 1.62249 1.26856 1.02388 1.34755 1.22261 0.96078 0.98731 0.90781 1.22060 0.95281 0.88279 1.01076 1.60206 1.30659 1.05681 1.33759 1.21457 0.96734 0.92378 0.93369 0.91372 1.20542 0.78578 0.87850 0.82672 1.43898 1.63067 1.24946 1.10218 1.90752 1.55180 1.53528 1.40476 1.21993 0.94188 0.88369 1.01684 0.93037 0.96618 0.96771 0.93382 0.92595 0.95018 0.91116 0.89143 0.93967 0.94050 0.89832 0.83567 0.76891 0.76800 0.93589 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.11 5.08 -26.73 -0.14 -2.25 16 11 C 0.06 0.96 4.96 -3.82 -0.02 0.94 16 12 N -0.54 -7.87 4.71 -234.46 -1.10 -8.97 16 13 C 0.05 0.69 5.41 -3.77 -0.02 0.67 16 14 C 0.06 0.71 6.72 -3.77 -0.03 0.68 16 15 N -0.67 -7.94 6.12 -107.81 -0.66 -8.60 16 16 C 0.07 0.83 2.99 -68.81 -0.21 0.62 16 17 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 18 C 0.52 5.82 7.29 -10.98 -0.08 5.74 16 19 N -0.86 -5.91 8.87 31.22 0.28 -5.63 16 20 O -0.53 -8.10 17.39 5.56 0.10 -8.00 16 21 C 0.07 0.85 4.87 -3.77 -0.02 0.83 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.96 6.49 -51.93 -0.34 0.63 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 28 H 0.07 1.18 8.03 -51.93 -0.42 0.76 16 29 H 0.09 1.29 6.33 -51.93 -0.33 0.96 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.35 3.63 8.82 -39.29 -0.35 3.28 16 34 H 0.40 1.77 8.83 -40.82 -0.36 1.41 16 35 H 0.40 2.31 8.93 -40.82 -0.36 1.95 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 LS Contribution 302.91 15.07 4.56 4.56 Total: -1.00 -33.36 302.91 -8.08 -41.45 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.92 Total: 0.67 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -1.05 Total: -5.84 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.75 Total: -49.46 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.10 Total: -8.00 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.36 -8.08 -41.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238562919.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.562 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds