Wall clock time and date at job start Mon Mar 30 2020 03:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46954 * 110.99881 * 66.04958 * 12 11 10 14 14 C 1.53052 * 109.36650 * 183.18585 * 13 12 11 15 15 N 1.46958 * 109.36142 * 301.59911 * 14 13 12 16 16 C 1.46954 * 110.88119 * 59.31954 * 15 14 13 17 17 H 1.09003 * 109.49318 * 60.66833 * 16 15 14 18 18 C 1.50703 * 109.48837 * 180.70890 * 16 15 14 19 19 N 1.34778 * 119.99884 * 199.99568 * 18 16 15 20 20 O 1.21275 * 119.99978 * 20.00123 * 18 16 15 21 21 C 1.46958 * 110.99672 * 189.84692 * 12 11 10 22 22 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 24 24 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 25 25 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 26 26 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 28 28 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 29 29 H 1.08996 * 109.49398 * 303.15172 * 13 12 11 30 30 H 1.09005 * 109.48821 * 63.20072 * 13 12 11 31 31 H 1.09002 * 109.48725 * 61.56066 * 14 13 12 32 32 H 1.08995 * 109.49296 * 181.61508 * 14 13 12 33 33 H 1.00905 * 110.99862 * 183.18666 * 15 14 13 34 34 H 0.97000 * 119.99946 * 0.02562 * 19 18 16 35 35 H 0.97004 * 120.00161 * 179.97438 * 19 18 16 36 36 H 1.09003 * 109.49103 * 296.77480 * 21 12 11 37 37 H 1.08996 * 109.49247 * 56.84655 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 3.2011 -6.1419 1.2515 14 6 4.2364 -7.2669 1.1791 15 7 3.5510 -8.5455 0.9450 16 6 2.7845 -8.5073 -0.3082 17 1 3.4614 -8.3258 -1.1431 18 6 2.0817 -9.8253 -0.5082 19 7 1.6589 -10.1839 -1.7367 20 8 1.8965 -10.5632 0.4363 21 6 1.7492 -7.3823 -0.2358 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8725 -3.6048 0.8878 26 1 2.8712 -3.6040 -0.8921 27 1 0.8543 -5.0449 0.8894 28 1 0.8525 -5.0447 -0.8905 29 1 3.7095 -5.1887 1.3962 30 1 2.5242 -6.3235 2.0863 31 1 4.9297 -7.0709 0.3611 32 1 4.7868 -7.3157 2.1186 33 1 4.2066 -9.3125 0.9447 34 1 1.8073 -9.5939 -2.4921 35 1 1.2069 -11.0325 -1.8655 36 1 1.0559 -7.5784 0.5821 37 1 1.1991 -7.3334 -1.1755 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238562919.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:38 Heat of formation + Delta-G solvation = -70.554998 kcal Electronic energy + Delta-G solvation = -17328.465114 eV Core-core repulsion = 14524.758451 eV Total energy + Delta-G solvation = -2803.706663 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.11514 -39.38815 -36.56907 -35.08946 -34.71564 -32.94432 -32.00826 -28.90007 -26.72528 -25.28996 -24.03738 -22.34215 -21.31187 -20.72323 -18.76203 -18.35783 -17.80258 -17.23504 -16.62643 -16.38096 -16.06148 -15.62794 -15.40044 -15.13822 -14.97023 -14.54777 -14.23432 -13.85897 -13.46089 -13.12672 -12.75135 -12.62726 -12.52225 -12.39644 -12.15596 -11.88086 -11.42530 -11.33011 -11.19128 -10.85861 -10.66552 -10.53196 -9.58103 -9.33671 -8.18692 -6.29499 1.41613 1.42888 1.51662 1.54072 2.36535 2.42652 2.88700 3.14804 3.24170 3.76898 3.92848 4.01968 4.14643 4.15412 4.29501 4.39737 4.54389 4.58726 4.71515 4.76136 4.85712 4.96531 5.04786 5.09109 5.27681 5.53588 5.73317 5.76757 5.87501 5.91397 5.95960 6.06133 6.27279 6.31186 6.47751 6.87661 7.32379 7.39862 8.93296 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049521 B = 0.004006 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.285113 B = 6988.566206 C = 7319.409088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.087 4.087 11 C 0.067 3.933 12 N -0.534 5.534 13 C 0.046 3.954 14 C 0.071 3.929 15 N -0.686 5.686 16 C 0.079 3.921 17 H 0.091 0.909 18 C 0.522 3.478 19 N -0.833 5.833 20 O -0.573 6.573 21 C 0.067 3.933 22 H 0.263 0.737 23 H -0.006 1.006 24 H -0.013 1.013 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.019 0.981 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.026 0.974 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.355 0.645 34 H 0.418 0.582 35 H 0.410 0.590 36 H 0.024 0.976 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.461 -18.173 -4.346 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.079 0.921 9 C -0.013 4.013 10 C -0.125 4.125 11 C -0.061 4.061 12 N -0.258 5.258 13 C -0.082 4.082 14 C -0.058 4.058 15 N -0.320 5.320 16 C -0.034 4.034 17 H 0.109 0.891 18 C 0.306 3.694 19 N -0.398 5.398 20 O -0.452 6.452 21 C -0.062 4.062 22 H 0.072 0.928 23 H 0.012 0.988 24 H 0.006 0.994 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.175 0.825 34 H 0.249 0.751 35 H 0.242 0.758 36 H 0.043 0.957 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.083 -18.176 -3.635 19.843 hybrid contribution -0.134 0.782 -0.237 0.828 sum 6.949 -17.394 -3.872 19.126 Atomic orbital electron populations 1.70103 1.07832 1.27727 1.51845 1.25984 0.95750 1.03372 0.94769 0.85452 0.78670 0.78426 0.78533 1.19674 1.20888 1.18703 1.21694 0.93570 0.92327 1.50316 0.92132 1.18984 0.94459 0.93150 0.94736 1.21376 0.97928 0.92292 1.00900 1.22048 0.93520 0.90312 1.00197 1.62216 1.26077 1.02460 1.35058 1.22324 0.96320 0.99694 0.89902 1.21998 0.94384 0.87097 1.02362 1.60162 1.31244 1.06103 1.34482 1.21421 0.96479 0.91598 0.93939 0.89145 1.20551 0.78295 0.87453 0.83136 1.43707 1.61336 1.25363 1.09390 1.90738 1.57309 1.54878 1.42230 1.22062 0.94464 0.87866 1.01814 0.92819 0.98772 0.99424 0.93161 0.92393 0.96225 0.90600 0.89727 0.95552 0.93045 0.88286 0.82537 0.75053 0.75790 0.95744 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.54 -30.82 9.11 25.60 0.23 -30.59 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.09 -3.54 5.08 30.59 0.16 -3.39 16 11 C 0.07 2.27 4.96 86.30 0.43 2.70 16 12 N -0.53 -14.98 4.71 -895.70 -4.22 -19.20 16 13 C 0.05 1.24 5.41 86.31 0.47 1.70 16 14 C 0.07 1.47 6.72 86.31 0.58 2.05 16 15 N -0.69 -15.13 6.12 -495.00 -3.03 -18.16 16 16 C 0.08 1.59 2.99 44.18 0.13 1.73 16 17 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 18 C 0.52 10.78 7.29 87.66 0.64 11.42 16 19 N -0.83 -9.41 8.87 -173.53 -1.54 -10.95 16 20 O -0.57 -17.27 17.39 -3.02 -0.05 -17.32 16 21 C 0.07 1.61 4.87 86.31 0.42 2.03 16 22 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 23 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 24 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 25 H 0.05 2.01 6.49 -2.39 -0.02 1.99 16 26 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.02 0.71 8.12 -2.39 -0.02 0.69 16 28 H 0.08 2.49 8.03 -2.39 -0.02 2.48 16 29 H 0.08 2.36 6.33 -2.39 -0.02 2.34 16 30 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.35 6.80 8.82 -89.69 -0.79 6.01 16 34 H 0.42 2.33 8.83 -92.71 -0.82 1.51 16 35 H 0.41 3.78 8.93 -92.71 -0.83 2.95 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.10 1.99 8.07 -2.39 -0.02 1.97 16 Total: -1.00 -72.27 302.91 -4.22 -76.49 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -1.35 Total: 10.28 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 3.67 Total: -10.53 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -8.51 Total: -105.11 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.05 Total: -17.32 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -72.27 -4.22 -76.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238562919.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.936 kcal (2) G-P(sol) polarization free energy of solvation -72.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds