Wall clock time and date at job start Mon Mar 30 2020 03:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99767 * 2 1 4 4 H 1.48501 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47329 * 299.99934 * 3 2 1 6 6 H 1.48506 * 109.47326 * 60.00046 * 3 2 1 7 7 C 1.37878 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99497 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46762 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47075 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.47216 * 180.02562 * 11 10 9 13 13 C 1.46959 * 111.00007 * 66.04177 * 12 11 10 14 14 C 1.53053 * 109.36396 * 176.81123 * 13 12 11 15 15 N 1.46955 * 109.36242 * 58.40715 * 14 13 12 16 16 C 1.46955 * 110.87898 * 300.67842 * 15 14 13 17 17 H 1.09005 * 109.48958 * 299.35094 * 16 15 14 18 18 C 1.50697 * 109.49250 * 179.29078 * 16 15 14 19 19 N 1.34771 * 120.00548 * 159.99478 * 18 16 15 20 20 O 1.21281 * 119.99582 * 339.99813 * 18 16 15 21 21 C 1.46955 * 110.99824 * 302.24796 * 12 11 10 22 22 H 0.96994 * 119.99726 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47437 * 59.99914 * 9 7 2 24 24 H 1.09000 * 109.47224 * 299.99612 * 9 7 2 25 25 H 1.09004 * 109.47362 * 59.99964 * 10 9 7 26 26 H 1.09000 * 109.47134 * 299.99911 * 10 9 7 27 27 H 1.08997 * 109.47241 * 60.00086 * 11 10 9 28 28 H 1.09000 * 109.47107 * 299.99976 * 11 10 9 29 29 H 1.09004 * 109.48713 * 56.84728 * 13 12 11 30 30 H 1.08995 * 109.49308 * 296.78545 * 13 12 11 31 31 H 1.08998 * 109.48872 * 298.43541 * 14 13 12 32 32 H 1.09001 * 109.48860 * 178.36990 * 14 13 12 33 33 H 1.00901 * 111.00068 * 64.54233 * 15 14 13 34 34 H 0.97001 * 120.00328 * 0.02562 * 19 18 16 35 35 H 0.96999 * 120.00287 * 179.97438 * 19 18 16 36 36 H 1.09001 * 109.48648 * 303.15296 * 21 12 11 37 37 H 1.09001 * 109.49302 * 63.19805 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0018 13 6 3.2006 -6.1413 1.2556 14 6 4.1244 -7.3615 1.2497 15 7 5.0231 -7.2867 0.0894 16 6 4.2575 -7.2490 -1.1644 17 1 3.6606 -8.1567 -1.2535 18 6 5.2071 -7.1550 -2.3308 19 7 4.7953 -7.5058 -3.5652 20 8 6.3421 -6.7636 -2.1586 21 6 3.3337 -6.0288 -1.1585 22 1 -0.4849 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6043 -0.8895 27 1 0.8534 -5.0451 -0.8885 28 1 0.8540 -5.0445 0.8914 29 1 2.5137 -6.2093 2.0993 30 1 3.7975 -5.2336 1.3447 31 1 3.5259 -8.2704 1.1882 32 1 4.7143 -7.3755 2.1662 33 1 5.6399 -6.4913 0.1604 34 1 3.8875 -7.8185 -3.7030 35 1 5.4064 -7.4449 -4.3159 36 1 2.7438 -6.0148 -2.0750 37 1 3.9319 -5.1197 -1.0972 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238621172.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:40 Heat of formation + Delta-G solvation = -44.634011 kcal Electronic energy + Delta-G solvation = -17655.524762 eV Core-core repulsion = 14852.942117 eV Total energy + Delta-G solvation = -2802.582645 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.27508 -38.46937 -35.21431 -33.85700 -33.18494 -31.12298 -30.87496 -27.08856 -25.10568 -24.33640 -22.65729 -21.24486 -20.54798 -19.54244 -17.80511 -16.95001 -16.35475 -15.57591 -15.24876 -15.00666 -14.66900 -14.49884 -14.22063 -14.15739 -13.65965 -12.94451 -12.79082 -12.19872 -12.05748 -11.71760 -11.37629 -11.31610 -11.11291 -10.88505 -10.79499 -10.55850 -10.02762 -9.83948 -9.70111 -9.51293 -9.22090 -8.58411 -8.39598 -8.01251 -6.04297 -4.07076 2.48843 3.24346 3.27843 3.35515 3.40080 3.96838 4.29745 4.42593 4.79772 4.85781 4.98657 5.12574 5.24886 5.30073 5.31916 5.55340 5.64341 5.72352 5.84530 5.89119 6.04126 6.18438 6.46978 6.57909 6.65656 6.75123 6.93877 7.10905 7.17548 7.22068 7.28486 7.60654 7.73941 7.94580 8.12534 8.37787 8.99864 9.57555 11.06754 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027328 B = 0.005068 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.349232 B = 5523.543210 C = 5911.192549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.025 3.975 10 C -0.145 4.145 11 C 0.052 3.948 12 N -0.532 5.532 13 C 0.008 3.992 14 C 0.062 3.938 15 N -0.671 5.671 16 C 0.073 3.927 17 H 0.109 0.891 18 C 0.528 3.472 19 N -0.854 5.854 20 O -0.535 6.535 21 C 0.025 3.975 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.351 0.649 34 H 0.402 0.598 35 H 0.402 0.598 36 H 0.082 0.918 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 -16.639 -2.945 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.184 4.184 11 C -0.075 4.075 12 N -0.255 5.255 13 C -0.122 4.122 14 C -0.068 4.068 15 N -0.302 5.302 16 C -0.041 4.041 17 H 0.127 0.873 18 C 0.311 3.689 19 N -0.418 5.418 20 O -0.410 6.410 21 C -0.106 4.106 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.171 0.829 34 H 0.231 0.769 35 H 0.232 0.768 36 H 0.101 0.899 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.650 -17.389 -2.684 18.480 hybrid contribution 0.188 2.628 -0.363 2.660 sum 5.838 -14.761 -3.047 16.163 Atomic orbital electron populations 1.69969 1.06033 1.26531 1.50902 1.25020 0.94850 0.99262 0.95262 0.86557 0.80138 0.83807 0.77654 1.19786 1.20936 1.20927 1.21278 0.92958 0.91156 1.50551 0.92888 1.19015 0.93797 0.91218 0.97200 1.22230 1.00034 0.95932 1.00206 1.22370 0.94330 0.88145 1.02642 1.62463 1.16875 1.44827 1.01366 1.22913 0.97488 0.98465 0.93295 1.22142 0.93688 0.97904 0.93019 1.60601 1.19721 1.49514 1.00322 1.21559 0.92797 1.00283 0.89480 0.87293 1.20452 0.88187 0.75922 0.84318 1.43824 1.17949 1.70348 1.09717 1.90737 1.20185 1.45469 1.84614 1.22682 0.95450 0.96648 0.95812 0.93019 0.96597 0.96569 0.93403 0.93376 0.90860 0.90760 0.89936 0.93904 0.90064 0.89866 0.82935 0.76909 0.76768 0.89920 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.65 4.97 -27.88 -0.14 0.51 16 10 C -0.15 -2.94 4.44 -26.73 -0.12 -3.06 16 11 C 0.05 0.86 5.38 -3.82 -0.02 0.84 16 12 N -0.53 -7.37 4.92 -234.46 -1.15 -8.53 16 13 C 0.01 0.11 5.26 -3.76 -0.02 0.09 16 14 C 0.06 0.68 6.72 -3.77 -0.03 0.65 16 15 N -0.67 -8.30 6.36 -107.81 -0.69 -8.98 16 16 C 0.07 0.84 2.99 -68.81 -0.21 0.63 16 17 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 18 C 0.53 6.44 7.35 -10.99 -0.08 6.36 16 19 N -0.85 -6.76 8.87 31.22 0.28 -6.48 16 20 O -0.53 -8.76 16.98 5.56 0.09 -8.67 16 21 C 0.02 0.32 4.32 -3.77 -0.02 0.31 16 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.98 6.62 -51.93 -0.34 0.64 16 26 H 0.05 0.99 6.44 -51.93 -0.33 0.65 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 29 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 30 H 0.04 0.63 6.63 -51.93 -0.34 0.28 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.35 4.78 8.26 -39.29 -0.32 4.46 16 34 H 0.40 2.05 8.83 -40.82 -0.36 1.69 16 35 H 0.40 2.77 8.93 -40.82 -0.36 2.40 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.78 6.45 -51.93 -0.33 0.45 16 LS Contribution 298.70 15.07 4.50 4.50 Total: -1.00 -33.02 298.70 -8.04 -41.05 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.75 Total: 3.78 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -1.04 Total: -7.33 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.83 Total: -50.17 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.02 -8.04 -41.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238621172.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.581 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds