Wall clock time and date at job start Mon Mar 30 2020 03:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99767 * 2 1 4 4 H 1.48501 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47329 * 299.99934 * 3 2 1 6 6 H 1.48506 * 109.47326 * 60.00046 * 3 2 1 7 7 C 1.37878 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99497 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46762 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47075 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.47216 * 180.02562 * 11 10 9 13 13 C 1.46959 * 111.00007 * 66.04177 * 12 11 10 14 14 C 1.53053 * 109.36396 * 176.81123 * 13 12 11 15 15 N 1.46955 * 109.36242 * 58.40715 * 14 13 12 16 16 C 1.46955 * 110.87898 * 300.67842 * 15 14 13 17 17 H 1.09005 * 109.48958 * 299.35094 * 16 15 14 18 18 C 1.50697 * 109.49250 * 179.29078 * 16 15 14 19 19 N 1.34771 * 120.00548 * 159.99478 * 18 16 15 20 20 O 1.21281 * 119.99582 * 339.99813 * 18 16 15 21 21 C 1.46955 * 110.99824 * 302.24796 * 12 11 10 22 22 H 0.96994 * 119.99726 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47437 * 59.99914 * 9 7 2 24 24 H 1.09000 * 109.47224 * 299.99612 * 9 7 2 25 25 H 1.09004 * 109.47362 * 59.99964 * 10 9 7 26 26 H 1.09000 * 109.47134 * 299.99911 * 10 9 7 27 27 H 1.08997 * 109.47241 * 60.00086 * 11 10 9 28 28 H 1.09000 * 109.47107 * 299.99976 * 11 10 9 29 29 H 1.09004 * 109.48713 * 56.84728 * 13 12 11 30 30 H 1.08995 * 109.49308 * 296.78545 * 13 12 11 31 31 H 1.08998 * 109.48872 * 298.43541 * 14 13 12 32 32 H 1.09001 * 109.48860 * 178.36990 * 14 13 12 33 33 H 1.00901 * 111.00068 * 64.54233 * 15 14 13 34 34 H 0.97001 * 120.00328 * 0.02562 * 19 18 16 35 35 H 0.96999 * 120.00287 * 179.97438 * 19 18 16 36 36 H 1.09001 * 109.48648 * 303.15296 * 21 12 11 37 37 H 1.09001 * 109.49302 * 63.19805 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0018 13 6 3.2006 -6.1413 1.2556 14 6 4.1244 -7.3615 1.2497 15 7 5.0231 -7.2867 0.0894 16 6 4.2575 -7.2490 -1.1644 17 1 3.6606 -8.1567 -1.2535 18 6 5.2071 -7.1550 -2.3308 19 7 4.7953 -7.5058 -3.5652 20 8 6.3421 -6.7636 -2.1586 21 6 3.3337 -6.0288 -1.1585 22 1 -0.4849 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6043 -0.8895 27 1 0.8534 -5.0451 -0.8885 28 1 0.8540 -5.0445 0.8914 29 1 2.5137 -6.2093 2.0993 30 1 3.7975 -5.2336 1.3447 31 1 3.5259 -8.2704 1.1882 32 1 4.7143 -7.3755 2.1662 33 1 5.6399 -6.4913 0.1604 34 1 3.8875 -7.8185 -3.7030 35 1 5.4064 -7.4449 -4.3159 36 1 2.7438 -6.0148 -2.0750 37 1 3.9319 -5.1197 -1.0972 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238621172.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:40 Heat of formation + Delta-G solvation = -73.211852 kcal Electronic energy + Delta-G solvation = -17656.763990 eV Core-core repulsion = 14852.942117 eV Total energy + Delta-G solvation = -2803.821873 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.28537 -39.56188 -36.61563 -35.06849 -34.73927 -32.67006 -32.06957 -28.70647 -26.52801 -25.50619 -24.05359 -22.80936 -21.54247 -20.80568 -18.77279 -18.43203 -17.82865 -16.74520 -16.62377 -16.33554 -15.97044 -15.80575 -15.41229 -15.27440 -14.95578 -14.52321 -13.96993 -13.91829 -13.48400 -13.10967 -12.80177 -12.67308 -12.59540 -12.53908 -12.31379 -12.14390 -11.48503 -11.42270 -11.33099 -11.00617 -10.66545 -10.60759 -9.61752 -9.24965 -8.25322 -6.37169 1.34649 1.35245 1.48157 1.53093 2.35596 2.40306 2.87058 3.06929 3.35578 3.85298 3.93396 3.99792 4.08650 4.13841 4.22353 4.38483 4.46167 4.54450 4.61351 4.71381 4.83393 4.89823 5.08079 5.08879 5.19085 5.43514 5.63503 5.78285 5.78445 5.90701 5.90852 6.01323 6.19724 6.22105 6.44849 6.78980 7.32015 7.32371 8.85683 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027328 B = 0.005068 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.349232 B = 5523.543210 C = 5911.192549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.050 0.950 9 C 0.029 3.971 10 C -0.127 4.127 11 C 0.063 3.937 12 N -0.520 5.520 13 C 0.006 3.994 14 C 0.070 3.930 15 N -0.677 5.677 16 C 0.081 3.919 17 H 0.134 0.866 18 C 0.524 3.476 19 N -0.832 5.832 20 O -0.583 6.583 21 C 0.026 3.974 22 H 0.265 0.735 23 H -0.004 1.004 24 H -0.005 1.005 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.021 0.979 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.341 0.659 34 H 0.419 0.581 35 H 0.409 0.591 36 H 0.096 0.904 37 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 -17.597 -3.242 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.068 0.932 9 C -0.008 4.008 10 C -0.166 4.166 11 C -0.065 4.065 12 N -0.242 5.242 13 C -0.124 4.124 14 C -0.059 4.059 15 N -0.307 5.307 16 C -0.033 4.033 17 H 0.151 0.849 18 C 0.308 3.692 19 N -0.396 5.396 20 O -0.463 6.463 21 C -0.104 4.104 22 H 0.074 0.926 23 H 0.014 0.986 24 H 0.013 0.987 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.039 0.961 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.160 0.840 34 H 0.251 0.749 35 H 0.241 0.759 36 H 0.114 0.886 37 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 5.892 -18.387 -3.012 19.542 hybrid contribution 0.069 2.898 -0.298 2.914 sum 5.960 -15.490 -3.310 16.924 Atomic orbital electron populations 1.70077 1.07581 1.27800 1.51438 1.25917 0.95783 1.03129 0.94610 0.85461 0.78825 0.79051 0.78107 1.19240 1.20015 1.20010 1.21680 0.93108 0.92802 1.50877 0.93210 1.18908 0.94201 0.92635 0.95082 1.22003 0.98823 0.96181 0.99640 1.22187 0.94475 0.86821 1.02995 1.62509 1.16940 1.42640 1.02160 1.23017 0.97663 0.98664 0.93048 1.22183 0.93306 0.97173 0.93258 1.60652 1.20009 1.48914 1.01103 1.21568 0.92332 1.00244 0.89148 0.84887 1.20603 0.87567 0.75543 0.85478 1.43654 1.18923 1.68419 1.08610 1.90720 1.22147 1.47954 1.85431 1.22708 0.95340 0.96327 0.96043 0.92603 0.98603 0.98675 0.93983 0.93895 0.90412 0.90567 0.89124 0.96060 0.88671 0.88310 0.84018 0.74934 0.75875 0.88586 0.96128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.55 -31.76 9.11 25.60 0.23 -31.53 16 8 H 0.05 2.85 7.74 -2.92 -0.02 2.83 16 9 C 0.03 1.55 4.97 29.85 0.15 1.70 16 10 C -0.13 -5.24 4.44 30.59 0.14 -5.10 16 11 C 0.06 2.03 5.38 86.30 0.46 2.50 16 12 N -0.52 -13.65 4.92 -895.70 -4.40 -18.05 16 13 C 0.01 0.14 5.26 86.31 0.45 0.60 16 14 C 0.07 1.39 6.72 86.31 0.58 1.97 16 15 N -0.68 -15.81 6.36 -495.01 -3.15 -18.96 16 16 C 0.08 1.72 2.99 44.17 0.13 1.85 16 17 H 0.13 2.21 8.14 -2.38 -0.02 2.19 16 18 C 0.52 12.10 7.35 87.66 0.64 12.75 16 19 N -0.83 -11.37 8.87 -173.54 -1.54 -12.91 16 20 O -0.58 -19.00 16.98 -3.03 -0.05 -19.05 16 21 C 0.03 0.66 4.32 86.31 0.37 1.03 16 22 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 23 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 24 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 25 H 0.04 1.75 6.62 -2.38 -0.02 1.74 16 26 H 0.04 1.79 6.44 -2.39 -0.02 1.78 16 27 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.08 2.44 8.10 -2.39 -0.02 2.43 16 29 H 0.09 2.09 8.11 -2.38 -0.02 2.07 16 30 H 0.02 0.62 6.63 -2.39 -0.02 0.60 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.34 9.22 8.26 -89.69 -0.74 8.48 16 34 H 0.42 3.03 8.83 -92.71 -0.82 2.21 16 35 H 0.41 4.84 8.93 -92.71 -0.83 4.01 16 36 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.02 0.64 6.45 -2.39 -0.02 0.63 16 Total: -1.00 -71.67 298.70 -4.50 -76.17 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -1.30 Total: 15.63 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 3.63 Total: -13.56 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -8.81 Total: -106.10 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.05 Total: -19.05 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -71.67 -4.50 -76.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238621172.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.959 kcal (2) G-P(sol) polarization free energy of solvation -71.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds