Wall clock time and date at job start Mon Mar 30 2020 03:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42895 * 114.00113 * 2 1 4 4 H 1.08997 * 109.53443 * 30.15078 * 3 2 1 5 5 C 1.53087 * 109.53395 * 270.00290 * 3 2 1 6 6 C 1.52880 * 109.20362 * 179.09881 * 5 3 2 7 7 C 1.53102 * 109.85664 * 60.79220 * 6 5 3 8 8 H 1.09000 * 110.48061 * 62.73469 * 7 6 5 9 9 O 1.43452 * 108.38021 * 183.30556 * 7 6 5 10 10 C 1.42996 * 113.64393 * 55.04550 * 9 7 6 11 11 C 1.52793 * 109.63352 * 62.62127 * 10 9 7 12 12 N 1.47288 * 108.76425 * 308.69869 * 11 10 9 13 13 C 1.36937 * 121.16925 * 229.79226 * 12 11 10 14 14 H 1.07998 * 120.00361 * 209.71432 * 13 12 11 15 15 C 1.38811 * 119.99613 * 29.70846 * 13 12 11 16 16 N 1.31622 * 120.00400 * 27.14144 * 15 13 12 17 17 Si 1.86803 * 119.99871 * 207.14116 * 15 13 12 18 18 H 1.48501 * 109.47250 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46878 * 120.00027 * 17 15 13 20 20 H 1.48495 * 109.47057 * 240.00025 * 17 15 13 21 21 C 1.46917 * 117.67111 * 49.51905 * 12 11 10 22 22 H 1.09002 * 109.29005 * 67.84375 * 21 12 11 23 23 C 1.52402 * 110.34837 * 187.40393 * 21 12 11 24 24 H 1.09003 * 109.46857 * 299.99652 * 1 2 3 25 25 H 1.08995 * 109.47588 * 59.99522 * 1 2 3 26 26 H 1.09007 * 109.47268 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.51172 * 59.17998 * 5 3 2 28 28 H 1.09002 * 109.55888 * 299.04421 * 5 3 2 29 29 H 1.09001 * 109.41047 * 300.67158 * 6 5 3 30 30 H 1.09007 * 109.33982 * 180.86759 * 6 5 3 31 31 H 1.08994 * 109.46367 * 182.79270 * 10 9 7 32 32 H 1.09003 * 109.45559 * 302.76361 * 10 9 7 33 33 H 1.08995 * 109.56222 * 188.88736 * 11 10 9 34 34 H 1.08998 * 109.45505 * 68.45260 * 11 10 9 35 35 H 0.96999 * 119.99791 * 4.81029 * 16 15 13 36 36 H 1.08994 * 109.37134 * 182.08188 * 23 21 12 37 37 H 1.09003 * 109.36929 * 301.72643 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3470 1.9996 0.5160 5 6 2.2183 1.7730 -1.4428 6 6 2.8193 3.1787 -1.4340 7 6 4.1745 3.1604 -0.7218 8 1 4.8789 2.5250 -1.2586 9 8 4.6728 4.5044 -0.6631 10 6 3.7651 5.4265 -0.0545 11 6 3.5237 5.0252 1.3999 12 7 3.1489 3.6014 1.4425 13 6 2.0453 3.1795 2.1349 14 1 2.0244 2.1897 2.5665 15 6 0.9536 4.0240 2.2820 16 7 0.7149 4.9541 1.3817 17 14 -0.1770 3.8406 3.7576 18 1 0.3060 2.7294 4.6162 19 1 -0.1803 5.1036 4.5387 20 1 -1.5552 3.5434 3.2914 21 6 3.9969 2.6504 0.7111 22 1 4.9716 2.5908 1.1954 23 6 3.3628 1.2646 0.7132 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.2600 1.7900 -1.9618 28 1 2.8971 1.0900 -1.9534 29 1 2.1450 3.8578 -0.9121 30 1 2.9542 3.5201 -2.4604 31 1 4.1887 6.4301 -0.0901 32 1 2.8178 5.4129 -0.5936 33 1 2.7171 5.6287 1.8160 34 1 4.4360 5.1810 1.9757 35 1 1.2597 5.0049 0.5807 36 1 4.0216 0.5648 0.1993 37 1 3.2191 0.9343 1.7421 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246445393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:17 Heat of formation + Delta-G solvation = -68.655866 kcal Electronic energy + Delta-G solvation = -19637.484757 eV Core-core repulsion = 16801.567695 eV Total energy + Delta-G solvation = -2835.917062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.80690 -37.39702 -34.99259 -34.14860 -31.29075 -29.89183 -28.76882 -26.91778 -25.85745 -23.70259 -22.40880 -21.47343 -20.70391 -18.41484 -17.09803 -16.16292 -15.86593 -15.37215 -14.89534 -14.55127 -14.23313 -13.74929 -13.56953 -13.31711 -12.99855 -12.56615 -12.43139 -11.75564 -11.61738 -11.37747 -11.21474 -10.87420 -10.71784 -10.51268 -10.38448 -10.25991 -10.12201 -9.96295 -9.72338 -9.27575 -8.95311 -8.76171 -8.30615 -6.86134 -6.17212 -3.35739 3.43859 3.46185 3.60196 4.28593 4.47013 4.55992 5.05641 5.20272 5.35662 5.47058 5.65204 5.73804 5.75852 5.87745 5.94061 5.95473 6.05295 6.08282 6.11426 6.14818 6.22234 6.29134 6.35281 6.48282 6.53282 6.73132 6.83135 6.92357 6.95393 6.99042 7.05859 7.83678 7.88840 7.93749 8.45192 8.97181 9.69612 10.19337 11.07016 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.015117 C = 0.009684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.994397 B = 1851.733589 C = 2890.813984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.397 6.397 3 C 0.075 3.925 4 H 0.115 0.885 5 C -0.127 4.127 6 C -0.141 4.141 7 C 0.074 3.926 8 H 0.089 0.911 9 O -0.391 6.391 10 C 0.039 3.961 11 C 0.106 3.894 12 N -0.593 5.593 13 C -0.338 4.338 14 H 0.062 0.938 15 C -0.024 4.024 16 N -0.909 5.909 17 Si 1.062 2.938 18 H -0.291 1.291 19 H -0.289 1.289 20 H -0.294 1.294 21 C 0.148 3.852 22 H 0.038 0.962 23 C -0.094 4.094 24 H 0.044 0.956 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.021 0.979 35 H 0.270 0.730 36 H 0.053 0.947 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.148 -4.189 -3.621 5.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.316 6.316 3 C 0.019 3.981 4 H 0.132 0.868 5 C -0.165 4.165 6 C -0.179 4.179 7 C 0.015 3.985 8 H 0.107 0.893 9 O -0.310 6.310 10 C -0.038 4.038 11 C -0.020 4.020 12 N -0.318 5.318 13 C -0.467 4.467 14 H 0.079 0.921 15 C -0.226 4.226 16 N -0.550 5.550 17 Si 0.892 3.108 18 H -0.217 1.217 19 H -0.216 1.216 20 H -0.221 1.221 21 C 0.042 3.958 22 H 0.055 0.945 23 C -0.131 4.131 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.038 0.962 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.104 -3.676 -2.888 4.803 hybrid contribution 0.872 -0.485 -0.804 1.281 sum 1.976 -4.160 -3.692 5.903 Atomic orbital electron populations 1.22648 0.82074 1.01227 1.00133 1.87751 1.18962 1.29754 1.95125 1.22651 0.96699 0.84291 0.94466 0.86780 1.21839 1.00126 0.96312 0.98224 1.22007 0.98192 0.97887 0.99791 1.22814 0.94506 0.83950 0.97215 0.89345 1.87964 1.43688 1.18302 1.81002 1.23023 0.93588 0.91694 0.95540 1.21588 0.99237 0.87392 0.93759 1.44203 1.28873 1.01308 1.57448 1.19869 0.93702 1.03595 1.29521 0.92066 1.25807 0.96536 0.97593 1.02706 1.70792 1.38624 1.37350 1.08275 0.83573 0.75551 0.75847 0.75865 1.21665 1.21563 1.22116 1.20947 0.94253 0.89881 0.90735 0.94479 1.21276 0.95029 0.95835 1.01008 0.93784 0.94807 0.90777 0.92717 0.92628 0.89455 0.92796 0.90297 0.92676 0.88894 0.96156 0.91779 0.92786 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.82 101.05 1.09 1.69 16 2 O -0.40 -7.67 10.36 -35.23 -0.36 -8.03 16 3 C 0.08 1.53 2.28 -26.70 -0.06 1.46 16 4 H 0.11 2.71 5.00 -51.93 -0.26 2.45 16 5 C -0.13 -2.34 5.54 -26.75 -0.15 -2.49 16 6 C -0.14 -2.72 4.73 -26.74 -0.13 -2.85 16 7 C 0.07 1.45 3.43 -26.61 -0.09 1.36 16 8 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 9 O -0.39 -8.05 10.62 -35.23 -0.37 -8.42 16 10 C 0.04 0.81 6.38 37.05 0.24 1.04 16 11 C 0.11 2.42 5.63 -3.72 -0.02 2.40 16 12 N -0.59 -14.02 2.24 -165.12 -0.37 -14.39 16 13 C -0.34 -8.61 6.07 -15.06 -0.09 -8.70 16 14 H 0.06 1.61 6.38 -52.49 -0.33 1.27 16 15 C -0.02 -0.62 4.72 -17.43 -0.08 -0.71 16 16 N -0.91 -24.89 12.26 55.49 0.68 -24.21 16 17 Si 1.06 24.07 30.00 -169.99 -5.10 18.97 16 18 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.15 3.12 3.09 -67.94 -0.21 2.91 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 23 C -0.09 -1.87 4.55 -27.05 -0.12 -1.99 16 24 H 0.04 0.76 8.09 -51.93 -0.42 0.34 16 25 H 0.03 0.53 7.86 -51.93 -0.41 0.12 16 26 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 27 H 0.05 0.98 7.86 -51.93 -0.41 0.57 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.96 4.65 -51.93 -0.24 1.72 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.06 1.19 4.89 -51.93 -0.25 0.93 16 33 H 0.09 2.33 5.73 -51.93 -0.30 2.03 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.27 7.29 4.74 -40.82 -0.19 7.09 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.52 6.90 -51.93 -0.36 1.16 16 LS Contribution 271.28 15.07 4.09 4.09 Total: -1.00 -27.43 271.28 -6.42 -33.85 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.35 Total: 4.01 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 0.38 Total: -5.87 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.31 Total: -38.59 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.74 Total: -16.46 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.10 Total: 18.97 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.43 -6.42 -33.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246445393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.807 kcal (2) G-P(sol) polarization free energy of solvation -27.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds