Wall clock time and date at job start Mon Mar 30 2020 03:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.50438 * 2 1 4 4 C 1.53041 * 109.50292 * 120.12178 * 2 1 3 5 5 N 1.46843 * 109.52229 * 179.11996 * 4 2 1 6 6 C 1.46896 * 110.99918 * 174.15658 * 5 4 2 7 7 C 1.50702 * 109.47251 * 293.64471 * 6 5 4 8 8 O 1.21289 * 119.99996 * 353.77928 * 7 6 5 9 9 N 1.34780 * 119.99942 * 173.78571 * 7 6 5 10 10 C 1.37097 * 119.99720 * 179.97438 * 9 7 6 11 11 H 1.07994 * 120.00226 * 359.97438 * 10 9 7 12 12 C 1.38954 * 119.99517 * 179.97438 * 10 9 7 13 13 N 1.31404 * 120.00259 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99518 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47057 * 90.00518 * 14 12 10 16 16 H 1.48502 * 109.47066 * 210.00059 * 14 12 10 17 17 H 1.48497 * 109.47341 * 330.00364 * 14 12 10 18 18 C 1.46848 * 111.19993 * 298.25410 * 5 4 2 19 19 C 1.53045 * 109.57148 * 61.71096 * 18 5 4 20 20 C 1.53115 * 109.50330 * 239.91991 * 2 1 3 21 21 H 1.09001 * 109.52315 * 62.49876 * 20 2 1 22 22 N 1.46904 * 109.52848 * 302.37463 * 20 2 1 23 23 H 1.09000 * 109.47035 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46780 * 300.07467 * 1 2 3 25 25 H 1.08994 * 109.47161 * 60.07853 * 1 2 3 26 26 H 1.09002 * 109.46047 * 299.13671 * 4 2 1 27 27 H 1.08995 * 109.46257 * 59.10305 * 4 2 1 28 28 H 1.08999 * 109.47300 * 53.64713 * 6 5 4 29 29 H 1.08998 * 109.47251 * 173.64295 * 6 5 4 30 30 H 0.96998 * 119.99847 * 359.97438 * 9 7 6 31 31 H 0.97001 * 119.99819 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.46286 * 181.75338 * 18 5 4 33 33 H 1.08994 * 109.46008 * 301.74084 * 18 5 4 34 34 H 1.08997 * 109.55707 * 180.94356 * 19 18 5 35 35 H 1.08999 * 109.45678 * 60.82895 * 19 18 5 36 36 H 1.00892 * 111.00382 * 180.12533 * 22 20 2 37 37 H 1.00895 * 110.99576 * 304.08247 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0410 -0.7240 1.2478 5 7 3.5093 -0.7426 1.2376 6 6 4.0372 -1.3068 2.4869 7 6 3.7049 -0.3869 3.6335 8 8 3.1896 0.6896 3.4175 9 7 3.9804 -0.7605 4.8988 10 6 3.6785 0.0766 5.9417 11 1 3.2203 1.0354 5.7494 12 6 3.9620 -0.3088 7.2463 13 7 4.5200 -1.4753 7.4803 14 14 3.5514 0.8320 8.6673 15 1 2.1746 0.5496 9.1468 16 1 4.5161 0.6109 9.7744 17 1 3.6369 2.2424 8.2105 18 6 4.0230 -1.4731 0.0719 19 6 3.5712 -0.7729 -1.2118 20 6 2.0412 -0.7234 -1.2489 21 1 1.7157 -0.1863 -2.1398 22 7 1.5064 -2.0913 -1.2776 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5150 0.8893 25 1 -0.3633 0.5126 -0.8906 26 1 1.6905 -0.2031 2.1389 27 1 1.6648 -1.7469 1.2537 28 1 3.5875 -2.2839 2.6630 29 1 5.1191 -1.4136 2.4087 30 1 4.3922 -1.6215 5.0715 31 1 4.7182 -1.7441 8.3910 32 1 5.1121 -1.4963 0.1088 33 1 3.6373 -2.4925 0.0833 34 1 3.9385 -1.3247 -2.0771 35 1 3.9687 0.2418 -1.2311 36 1 1.8316 -2.5898 -2.0922 37 1 1.7407 -2.5889 -0.4317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251838291.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:03 Heat of formation + Delta-G solvation = -38.829477 kcal Electronic energy + Delta-G solvation = -17986.574680 eV Core-core repulsion = 15184.243738 eV Total energy + Delta-G solvation = -2802.330942 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.68750 -37.88791 -34.72925 -33.74884 -32.32248 -31.21097 -29.93957 -27.29687 -26.00858 -24.53766 -22.71050 -21.55614 -19.13734 -18.74562 -17.82870 -16.51548 -15.92733 -15.32251 -15.00428 -14.61212 -14.39134 -14.13616 -13.70313 -13.53950 -13.50684 -12.72482 -12.35379 -12.19554 -12.00874 -11.59870 -11.44319 -11.34105 -11.25580 -10.97137 -10.70891 -10.38489 -10.32823 -10.20230 -10.06721 -9.44734 -8.70817 -8.39271 -7.94862 -7.80602 -6.39902 -3.80502 3.19101 3.27596 3.33688 3.93316 3.98934 4.25522 4.57178 4.77184 4.88897 5.06629 5.10191 5.27212 5.29189 5.41867 5.61754 5.62192 5.68972 5.79647 5.84225 5.91525 5.99234 6.01257 6.13823 6.17763 6.32302 6.37280 6.57011 6.62120 7.12620 7.32166 7.39629 7.45733 7.57017 8.08697 8.64360 9.20387 9.56937 10.09120 10.78003 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.043180 B = 0.005221 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.293840 B = 5361.562041 C = 5685.911757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 H 0.081 0.919 4 C 0.060 3.940 5 N -0.515 5.515 6 C 0.046 3.954 7 C 0.444 3.556 8 O -0.575 6.575 9 N -0.566 5.566 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.055 3.945 19 C -0.150 4.150 20 C 0.093 3.907 21 H 0.077 0.923 22 N -0.842 5.842 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.098 0.902 27 H 0.024 0.976 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.391 0.609 31 H 0.271 0.729 32 H 0.073 0.927 33 H 0.024 0.976 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.334 0.666 37 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 -3.265 -14.525 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 H 0.099 0.901 4 C -0.068 4.068 5 N -0.239 5.239 6 C -0.085 4.085 7 C 0.229 3.771 8 O -0.459 6.459 9 N -0.203 5.203 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.545 5.545 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.194 1.194 18 C -0.074 4.074 19 C -0.190 4.190 20 C -0.019 4.019 21 H 0.096 0.904 22 N -0.372 5.372 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.116 0.884 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.224 0.776 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.096 -1.788 -14.548 14.981 hybrid contribution 1.017 -1.254 1.025 1.912 sum -2.079 -3.042 -13.523 14.016 Atomic orbital electron populations 1.21647 0.94574 1.02254 1.00860 1.21145 0.95747 0.99854 0.93017 0.90104 1.22243 0.86388 0.98232 0.99932 1.61463 1.08702 1.53211 1.00512 1.21850 1.00643 0.95926 0.90095 1.19744 0.85192 0.88618 0.83543 1.90506 1.47443 1.23823 1.84091 1.41880 1.54672 1.19244 1.04482 1.19696 1.37673 1.00920 0.84457 0.87935 1.25249 0.97081 0.96861 0.98756 1.69611 1.42814 1.20149 1.21882 0.85865 0.78091 0.80261 0.80118 1.20437 1.20955 1.19412 1.22075 1.00006 0.94379 0.90913 1.22363 0.97911 1.02335 0.96377 1.21525 0.91343 0.90223 0.98806 0.90438 1.58997 1.66656 1.03982 1.07599 0.91867 0.93041 0.93197 0.88416 0.95818 0.93731 0.89432 0.77557 0.91919 0.90895 0.95820 0.91989 0.90470 0.85349 0.84709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.02 37.16 0.34 -1.42 16 2 C -0.08 -1.10 2.71 -90.54 -0.25 -1.35 16 3 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.06 0.99 4.16 -3.83 -0.02 0.97 16 5 N -0.51 -8.65 4.35 -236.12 -1.03 -9.68 16 6 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 7 C 0.44 10.57 7.31 -10.98 -0.08 10.49 16 8 O -0.57 -15.61 14.28 5.55 0.08 -15.53 16 9 N -0.57 -14.45 5.29 -10.96 -0.06 -14.51 16 10 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 11 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 14 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 C 0.05 0.71 5.22 -3.83 -0.02 0.69 16 19 C -0.15 -1.69 5.77 -26.65 -0.15 -1.84 16 20 C 0.09 1.06 3.19 -67.59 -0.22 0.85 16 21 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 22 N -0.84 -8.84 8.31 -4.56 -0.04 -8.88 16 23 H 0.06 0.82 7.54 -51.93 -0.39 0.43 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.10 2.00 6.05 -51.93 -0.31 1.69 16 27 H 0.02 0.37 6.64 -51.93 -0.34 0.03 16 28 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 29 H 0.09 1.45 7.98 -51.93 -0.41 1.04 16 30 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.07 0.90 8.01 -51.93 -0.42 0.49 16 33 H 0.02 0.28 6.84 -51.93 -0.35 -0.07 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.33 2.87 9.04 -39.30 -0.36 2.51 16 37 H 0.34 3.79 5.61 -39.29 -0.22 3.57 16 LS Contribution 292.20 15.07 4.40 4.40 Total: -1.00 -30.22 292.20 -7.20 -37.42 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -5.60 Total: 13.41 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -0.66 Total: 1.20 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.40 Total: -57.06 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.08 Total: -15.53 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.22 -7.20 -37.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251838291.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.406 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds