Wall clock time and date at job start Mon Mar 30 2020 03:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.50438 * 2 1 4 4 C 1.53041 * 109.50292 * 120.12178 * 2 1 3 5 5 N 1.46843 * 109.52229 * 179.11996 * 4 2 1 6 6 C 1.46896 * 110.99918 * 174.15658 * 5 4 2 7 7 C 1.50702 * 109.47251 * 293.64471 * 6 5 4 8 8 O 1.21289 * 119.99996 * 353.77928 * 7 6 5 9 9 N 1.34780 * 119.99942 * 173.78571 * 7 6 5 10 10 C 1.37097 * 119.99720 * 179.97438 * 9 7 6 11 11 H 1.07994 * 120.00226 * 359.97438 * 10 9 7 12 12 C 1.38954 * 119.99517 * 179.97438 * 10 9 7 13 13 N 1.31404 * 120.00259 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99518 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47057 * 90.00518 * 14 12 10 16 16 H 1.48502 * 109.47066 * 210.00059 * 14 12 10 17 17 H 1.48497 * 109.47341 * 330.00364 * 14 12 10 18 18 C 1.46848 * 111.19993 * 298.25410 * 5 4 2 19 19 C 1.53045 * 109.57148 * 61.71096 * 18 5 4 20 20 C 1.53115 * 109.50330 * 239.91991 * 2 1 3 21 21 H 1.09001 * 109.52315 * 62.49876 * 20 2 1 22 22 N 1.46904 * 109.52848 * 302.37463 * 20 2 1 23 23 H 1.09000 * 109.47035 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46780 * 300.07467 * 1 2 3 25 25 H 1.08994 * 109.47161 * 60.07853 * 1 2 3 26 26 H 1.09002 * 109.46047 * 299.13671 * 4 2 1 27 27 H 1.08995 * 109.46257 * 59.10305 * 4 2 1 28 28 H 1.08999 * 109.47300 * 53.64713 * 6 5 4 29 29 H 1.08998 * 109.47251 * 173.64295 * 6 5 4 30 30 H 0.96998 * 119.99847 * 359.97438 * 9 7 6 31 31 H 0.97001 * 119.99819 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.46286 * 181.75338 * 18 5 4 33 33 H 1.08994 * 109.46008 * 301.74084 * 18 5 4 34 34 H 1.08997 * 109.55707 * 180.94356 * 19 18 5 35 35 H 1.08999 * 109.45678 * 60.82895 * 19 18 5 36 36 H 1.00892 * 111.00382 * 180.12533 * 22 20 2 37 37 H 1.00895 * 110.99576 * 304.08247 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0410 -0.7240 1.2478 5 7 3.5093 -0.7426 1.2376 6 6 4.0372 -1.3068 2.4869 7 6 3.7049 -0.3869 3.6335 8 8 3.1896 0.6896 3.4175 9 7 3.9804 -0.7605 4.8988 10 6 3.6785 0.0766 5.9417 11 1 3.2203 1.0354 5.7494 12 6 3.9620 -0.3088 7.2463 13 7 4.5200 -1.4753 7.4803 14 14 3.5514 0.8320 8.6673 15 1 2.1746 0.5496 9.1468 16 1 4.5161 0.6109 9.7744 17 1 3.6369 2.2424 8.2105 18 6 4.0230 -1.4731 0.0719 19 6 3.5712 -0.7729 -1.2118 20 6 2.0412 -0.7234 -1.2489 21 1 1.7157 -0.1863 -2.1398 22 7 1.5064 -2.0913 -1.2776 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5150 0.8893 25 1 -0.3633 0.5126 -0.8906 26 1 1.6905 -0.2031 2.1389 27 1 1.6648 -1.7469 1.2537 28 1 3.5875 -2.2839 2.6630 29 1 5.1191 -1.4136 2.4087 30 1 4.3922 -1.6215 5.0715 31 1 4.7182 -1.7441 8.3910 32 1 5.1121 -1.4963 0.1088 33 1 3.6373 -2.4925 0.0833 34 1 3.9385 -1.3247 -2.0771 35 1 3.9687 0.2418 -1.2311 36 1 1.8316 -2.5898 -2.0922 37 1 1.7407 -2.5889 -0.4317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251838291.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:02 Heat of formation + Delta-G solvation = -62.696686 kcal Electronic energy + Delta-G solvation = -17987.609639 eV Core-core repulsion = 15184.243738 eV Total energy + Delta-G solvation = -2803.365901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.96633 -39.62340 -36.21312 -35.55398 -33.39721 -33.24850 -30.99048 -28.78275 -27.21011 -26.29635 -23.98401 -22.67091 -21.00529 -19.87497 -19.80336 -17.78073 -17.43150 -16.67031 -16.50596 -16.26662 -15.64389 -15.43015 -15.31386 -15.02986 -14.77193 -14.00677 -13.74158 -13.49178 -13.36772 -13.29829 -12.95378 -12.69259 -12.46368 -12.41633 -12.27913 -12.12397 -11.81443 -11.51732 -11.43096 -11.16583 -10.26576 -9.99959 -9.55475 -9.13506 -8.46769 -5.95368 1.37447 1.41002 1.53908 2.05595 2.28245 2.75023 3.19980 3.36363 3.72159 3.75225 3.93278 4.10000 4.15112 4.28779 4.36149 4.43018 4.50105 4.53261 4.60957 4.78420 4.85261 4.93722 4.96758 4.98489 5.20047 5.28249 5.37180 5.40669 5.50583 5.90233 6.09846 6.26026 6.27737 6.61033 6.65341 7.13190 7.56568 8.12940 8.70802 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.043180 B = 0.005221 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.293840 B = 5361.562041 C = 5685.911757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.077 4.077 3 H 0.059 0.941 4 C 0.066 3.934 5 N -0.534 5.534 6 C 0.058 3.942 7 C 0.440 3.560 8 O -0.614 6.614 9 N -0.575 5.575 10 C -0.332 4.332 11 H 0.077 0.923 12 C -0.012 4.012 13 N -0.921 5.921 14 Si 0.992 3.008 15 H -0.271 1.271 16 H -0.270 1.270 17 H -0.274 1.274 18 C 0.053 3.947 19 C -0.144 4.144 20 C 0.101 3.899 21 H 0.090 0.910 22 N -0.841 5.841 23 H 0.065 0.935 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.395 0.605 31 H 0.277 0.723 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.350 0.650 37 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.954 -4.357 -15.795 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.096 4.096 3 H 0.078 0.922 4 C -0.062 4.062 5 N -0.259 5.259 6 C -0.074 4.074 7 C 0.228 3.772 8 O -0.499 6.499 9 N -0.213 5.213 10 C -0.462 4.462 11 H 0.095 0.905 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.816 3.184 15 H -0.196 1.196 16 H -0.195 1.195 17 H -0.199 1.199 18 C -0.074 4.074 19 C -0.184 4.184 20 C -0.010 4.010 21 H 0.108 0.892 22 N -0.373 5.373 23 H 0.084 0.916 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.127 0.873 30 H 0.229 0.771 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.164 0.836 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.792 -2.912 -15.846 16.351 hybrid contribution 0.918 -0.918 1.372 1.889 sum -1.874 -3.830 -14.474 15.089 Atomic orbital electron populations 1.21595 0.93887 1.02354 1.00887 1.21105 0.96307 0.98797 0.93408 0.92206 1.22077 0.86632 0.98350 0.99094 1.61431 1.08736 1.54663 1.01105 1.21725 1.02098 0.94931 0.88602 1.20791 0.83330 0.88802 0.84305 1.90481 1.48709 1.25927 1.84814 1.41944 1.55295 1.19199 1.04855 1.19645 1.39530 1.00942 0.86086 0.90461 1.26019 0.96370 0.98302 1.00505 1.69669 1.42718 1.21042 1.22813 0.84938 0.78362 0.77976 0.77121 1.19637 1.19453 1.19852 1.22207 1.00541 0.94969 0.89714 1.22355 0.97550 1.01957 0.96548 1.21404 0.91521 0.90646 0.97474 0.89155 1.58940 1.66688 1.03501 1.08144 0.91620 0.94649 0.91555 0.93268 0.94800 0.91830 0.87264 0.77094 0.91311 0.89968 0.94100 0.88946 0.91691 0.83645 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.02 71.98 0.65 -2.65 16 2 C -0.08 -2.13 2.71 -10.74 -0.03 -2.15 16 3 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 4 C 0.07 2.21 4.16 86.33 0.36 2.57 16 5 N -0.53 -17.55 4.35 -900.93 -3.92 -21.47 16 6 C 0.06 2.05 5.45 85.56 0.47 2.52 16 7 C 0.44 21.52 7.31 87.66 0.64 22.16 16 8 O -0.61 -34.80 14.28 -3.06 -0.04 -34.84 16 9 N -0.58 -30.13 5.29 -306.98 -1.62 -31.75 16 10 C -0.33 -19.21 9.68 84.04 0.81 -18.39 16 11 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 13 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 14 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 15 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 16 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 C 0.05 1.23 5.22 86.33 0.45 1.68 16 19 C -0.14 -2.83 5.77 30.65 0.18 -2.65 16 20 C 0.10 2.08 3.19 44.99 0.14 2.22 16 21 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 22 N -0.84 -15.09 8.31 -168.35 -1.40 -16.49 16 23 H 0.06 1.63 7.54 -2.39 -0.02 1.62 16 24 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 2.12 6.05 -2.39 -0.01 2.10 16 27 H 0.03 1.04 6.64 -2.39 -0.02 1.02 16 28 H 0.06 2.04 8.12 -2.39 -0.02 2.02 16 29 H 0.11 3.43 7.98 -2.39 -0.02 3.41 16 30 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 31 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.08 1.77 8.01 -2.39 -0.02 1.76 16 33 H 0.04 0.83 6.84 -2.39 -0.02 0.82 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.35 4.65 9.04 -89.70 -0.81 3.84 16 37 H 0.34 6.55 5.61 -89.70 -0.50 6.04 16 Total: -1.00 -66.73 292.20 -1.49 -68.22 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -0.96 Total: 35.67 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 4.14 Total: 5.10 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -6.66 Total: -119.68 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.04 Total: -34.84 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -66.73 -1.49 -68.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251838291.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.521 kcal (2) G-P(sol) polarization free energy of solvation -66.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds