Wall clock time and date at job start Mon Mar 30 2020 04:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00265 * 2 1 4 4 C 1.34779 * 119.99885 * 180.02562 * 2 1 3 5 5 O 1.21593 * 119.99557 * 354.61743 * 4 2 1 6 6 N 1.34771 * 120.00331 * 174.89735 * 4 2 1 7 7 C 1.46927 * 120.62847 * 4.80225 * 6 4 2 8 8 C 1.52755 * 109.01071 * 233.58324 * 7 6 4 9 9 C 1.53041 * 109.38468 * 305.59240 * 8 7 6 10 10 N 1.46503 * 109.44859 * 181.25016 * 9 8 7 11 11 C 1.36942 * 119.99913 * 84.93891 * 10 9 8 12 12 H 1.07994 * 119.99844 * 359.97438 * 11 10 9 13 13 C 1.38809 * 119.99823 * 179.97438 * 11 10 9 14 14 N 1.31622 * 120.00205 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00273 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47371 * 89.99927 * 15 13 11 17 17 H 1.48502 * 109.47311 * 209.99990 * 15 13 11 18 18 H 1.48499 * 109.46868 * 330.00043 * 15 13 11 19 19 C 1.53043 * 109.53781 * 61.23901 * 9 8 7 20 20 C 1.46927 * 120.63285 * 185.08781 * 6 4 2 21 21 H 1.09006 * 109.46962 * 270.00177 * 1 2 3 22 22 H 1.09000 * 109.46910 * 29.99539 * 1 2 3 23 23 H 1.08996 * 109.47591 * 149.99467 * 1 2 3 24 24 H 1.09002 * 109.47181 * 245.81931 * 3 2 1 25 25 H 1.08997 * 109.47272 * 5.82721 * 3 2 1 26 26 H 1.09005 * 109.46827 * 125.82602 * 3 2 1 27 27 H 1.08991 * 109.59030 * 353.42552 * 7 6 4 28 28 H 1.09002 * 109.58474 * 113.84772 * 7 6 4 29 29 H 1.08995 * 109.56943 * 185.55418 * 8 7 6 30 30 H 1.09005 * 109.35962 * 65.49857 * 8 7 6 31 31 H 1.08995 * 109.46196 * 301.21363 * 9 8 7 32 32 H 0.96995 * 120.00139 * 264.93873 * 10 9 8 33 33 H 0.96995 * 120.00412 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.49568 * 178.68364 * 19 9 8 35 35 H 1.08996 * 109.52573 * 58.60558 * 19 9 8 36 36 H 1.09004 * 109.58571 * 246.15760 * 20 6 4 37 37 H 1.09003 * 109.58647 * 6.43364 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5348 -2.2179 0.0978 6 7 3.4826 -1.1696 -0.1043 7 6 4.2350 0.0924 -0.1120 8 6 5.1339 0.1282 -1.3466 9 6 6.0098 -1.1265 -1.3737 10 7 6.8936 -1.0792 -2.5412 11 6 8.0847 -0.4069 -2.4715 12 1 8.3722 0.0887 -1.5561 13 6 8.9223 -0.3626 -3.5775 14 7 10.0673 0.2831 -3.5104 15 14 8.4253 -1.2205 -5.1606 16 1 7.6582 -0.2783 -6.0145 17 1 9.6424 -1.6664 -5.8852 18 1 7.5801 -2.3988 -4.8407 19 6 5.1210 -2.3695 -1.4572 20 6 4.2224 -2.4339 -0.2182 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3634 -0.8899 -0.5139 24 1 2.7438 1.3729 -0.9375 25 1 1.4939 2.0946 0.1043 26 1 2.9001 1.2825 0.8333 27 1 3.5404 0.9317 -0.1429 28 1 4.8495 0.1568 0.7859 29 1 5.7681 1.0139 -1.3108 30 1 4.5150 0.1593 -2.2434 31 1 6.6104 -1.1698 -0.4652 32 1 6.6352 -1.5240 -3.3634 33 1 10.6525 0.3144 -4.2833 34 1 5.7460 -3.2615 -1.5001 35 1 4.5023 -2.3155 -2.3529 36 1 4.8358 -2.5797 0.6710 37 1 3.5194 -3.2611 -0.3167 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259866286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:54 Heat of formation + Delta-G solvation = 40.834228 kcal Electronic energy + Delta-G solvation = -18173.276829 eV Core-core repulsion = 15374.400365 eV Total energy + Delta-G solvation = -2798.876464 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.87909 -38.94562 -37.13975 -36.18057 -33.88736 -32.41053 -31.54574 -29.23547 -27.76512 -25.70197 -24.10198 -23.45896 -21.86007 -20.81263 -19.52023 -18.04385 -17.54749 -16.99949 -16.79999 -16.01993 -15.60264 -15.23180 -15.11534 -14.98935 -14.80140 -14.58798 -14.01906 -13.80515 -13.51470 -13.35990 -13.08092 -12.94522 -12.75570 -12.34463 -12.11368 -12.04491 -11.81596 -11.49883 -11.33290 -11.09021 -10.26972 -9.99984 -9.30334 -9.23895 -8.01862 -5.34602 1.37826 1.39403 1.47058 1.61818 2.08381 2.48235 2.80052 3.29731 3.53328 3.82063 3.89330 4.16711 4.20878 4.26788 4.37203 4.41181 4.43363 4.62581 4.70684 4.75548 4.80583 4.86261 4.88582 4.96878 5.01847 5.05069 5.23557 5.43416 5.52978 5.65954 5.78126 5.93566 6.22470 6.84791 7.08111 7.48130 7.84856 8.03761 9.19650 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040151 B = 0.005660 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.201050 B = 4946.147310 C = 5136.381698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.637 5.637 3 C 0.053 3.947 4 C 0.698 3.302 5 O -0.638 6.638 6 N -0.617 5.617 7 C -0.002 4.002 8 C -0.138 4.138 9 C 0.174 3.826 10 N -0.753 5.753 11 C -0.225 4.225 12 H 0.060 0.940 13 C -0.062 4.062 14 N -0.984 5.984 15 Si 0.951 3.049 16 H -0.279 1.279 17 H -0.297 1.297 18 H -0.257 1.257 19 C -0.130 4.130 20 C 0.138 3.862 21 H 0.058 0.942 22 H 0.103 0.897 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.113 0.887 26 H 0.096 0.904 27 H 0.205 0.795 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.362 0.638 33 H 0.257 0.743 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.403 2.379 7.511 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.375 5.375 3 C -0.086 4.086 4 C 0.400 3.600 5 O -0.520 6.520 6 N -0.353 5.353 7 C -0.122 4.122 8 C -0.178 4.178 9 C 0.066 3.934 10 N -0.396 5.396 11 C -0.356 4.356 12 H 0.078 0.922 13 C -0.253 4.253 14 N -0.635 5.635 15 Si 0.779 3.221 16 H -0.206 1.206 17 H -0.224 1.224 18 H -0.182 1.182 19 C -0.169 4.169 20 C 0.014 3.986 21 H 0.077 0.923 22 H 0.121 0.879 23 H 0.071 0.929 24 H 0.101 0.899 25 H 0.131 0.869 26 H 0.114 0.886 27 H 0.219 0.781 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.195 0.805 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.557 1.941 7.673 21.098 hybrid contribution 0.719 -0.609 -1.210 1.533 sum -18.838 1.332 6.463 19.960 Atomic orbital electron populations 1.21673 0.76499 1.03504 1.02276 1.46941 1.07831 1.04635 1.78056 1.22414 0.98059 0.85636 1.02537 1.16141 0.81761 0.84211 0.77847 1.90843 1.68510 1.32165 1.60523 1.47244 1.03866 1.08385 1.75803 1.25039 0.98931 0.90595 0.97606 1.22295 0.97881 0.99557 0.98105 1.20417 0.89804 0.93770 0.89363 1.42858 1.20189 1.64179 1.12382 1.19032 0.94506 1.24001 0.98039 0.92162 1.25421 0.96645 1.01856 1.01420 1.69868 1.12967 1.49307 1.31314 0.85467 0.77046 0.79256 0.80330 1.20567 1.22409 1.18155 1.22107 0.97727 0.98767 0.98303 1.21363 0.93981 0.85845 0.97376 0.92323 0.87880 0.92857 0.89876 0.86852 0.88647 0.78055 0.91672 0.91843 0.92962 0.93870 0.80502 0.93418 0.90483 0.92445 0.90799 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.60 10.35 127.77 1.32 2.93 16 2 N -0.64 -12.82 3.27 ******* -3.73 -16.55 16 3 C 0.05 0.63 8.48 127.77 1.08 1.71 16 4 C 0.70 20.22 8.21 179.06 1.47 21.69 16 5 O -0.64 -23.34 15.41 -4.01 -0.06 -23.40 16 6 N -0.62 -16.90 2.98 -837.76 -2.50 -19.39 16 7 C 0.00 -0.06 4.84 86.22 0.42 0.36 16 8 C -0.14 -4.27 5.57 30.53 0.17 -4.10 16 9 C 0.17 6.42 2.73 45.02 0.12 6.54 16 10 N -0.75 -34.72 4.92 -322.81 -1.59 -36.31 16 11 C -0.22 -12.57 10.41 84.03 0.87 -11.70 16 12 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 13 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 14 N -0.98 -62.57 13.97 21.65 0.30 -62.27 16 15 Si 0.95 45.62 27.73 68.60 1.90 47.52 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 18 H -0.26 -11.29 6.52 99.48 0.65 -10.64 16 19 C -0.13 -4.09 5.55 30.67 0.17 -3.92 16 20 C 0.14 3.95 6.42 86.36 0.55 4.51 16 21 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 22 H 0.10 0.87 7.97 -2.39 -0.02 0.85 16 23 H 0.05 1.08 7.50 -2.39 -0.02 1.06 16 24 H 0.08 1.06 6.45 -2.39 -0.02 1.05 16 25 H 0.11 0.57 7.85 -2.39 -0.02 0.55 16 26 H 0.10 1.02 6.10 -2.38 -0.01 1.01 16 27 H 0.20 3.35 1.20 -80.93 -0.10 3.25 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.04 1.69 8.08 -2.39 -0.02 1.67 16 32 H 0.36 16.35 5.66 -92.71 -0.52 15.82 16 33 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 34 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.08 2.48 7.04 -2.39 -0.02 2.46 16 Total: -1.00 -75.32 288.30 1.37 -73.95 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.39 Total: 21.60 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 6.65 Total: 14.86 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -7.52 Total: -134.53 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.06 Total: -23.40 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Total: -75.32 1.37 -73.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259866286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.788 kcal (2) G-P(sol) polarization free energy of solvation -75.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds