Wall clock time and date at job start Mon Mar 30 2020 04:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34771 * 120.00017 * 2 1 4 4 O 1.21586 * 119.99907 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00157 * 180.02562 * 3 2 1 6 6 C 1.47027 * 125.64419 * 359.95383 * 5 3 2 7 7 C 1.54369 * 107.28611 * 181.13270 * 6 5 3 8 8 C 1.55160 * 102.92153 * 22.13658 * 7 6 5 9 9 H 1.09002 * 111.00002 * 82.64463 * 8 7 6 10 10 C 1.53001 * 111.00327 * 206.45207 * 8 7 6 11 11 N 1.46502 * 109.46989 * 181.82054 * 10 8 7 12 12 C 1.46499 * 119.99914 * 90.00011 * 11 10 8 13 13 C 1.36938 * 120.00231 * 270.00459 * 11 10 8 14 14 H 1.07999 * 120.00057 * 334.59976 * 13 11 10 15 15 C 1.38818 * 120.00009 * 154.60393 * 13 11 10 16 16 N 1.31618 * 119.99903 * 3.91697 * 15 13 11 17 17 Si 1.86800 * 119.99547 * 183.91431 * 15 13 11 18 18 H 1.48493 * 109.47192 * 60.00281 * 17 15 13 19 19 H 1.48503 * 109.46739 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47316 * 299.99485 * 17 15 13 21 21 C 1.47420 * 125.65225 * 180.02562 * 5 3 2 22 22 H 1.08999 * 109.47200 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46689 * 299.99649 * 1 2 3 24 24 H 1.08992 * 109.46973 * 59.99827 * 1 2 3 25 25 H 0.97003 * 119.99507 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.87973 * 300.51283 * 6 5 3 27 27 H 1.08994 * 109.87943 * 61.53025 * 6 5 3 28 28 H 1.09008 * 110.70384 * 263.79846 * 7 6 5 29 29 H 1.09000 * 110.76031 * 140.50996 * 7 6 5 30 30 H 1.09000 * 109.47170 * 61.82758 * 10 8 7 31 31 H 1.08989 * 109.47561 * 301.81980 * 10 8 7 32 32 H 1.08992 * 109.47396 * 264.46871 * 12 11 10 33 33 H 1.09003 * 109.47061 * 144.46562 * 12 11 10 34 34 H 1.09007 * 109.47249 * 24.47364 * 12 11 10 35 35 H 0.96996 * 119.99876 * 180.02562 * 16 15 13 36 36 H 1.09000 * 110.36800 * 36.99574 * 21 5 3 37 37 H 1.09003 * 110.36904 * 274.67557 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.3435 -0.0276 -0.0002 7 6 5.8084 0.4585 0.0281 8 6 5.6874 1.8910 0.6119 9 1 5.6330 1.8660 1.7002 10 6 6.8463 2.7735 0.1439 11 7 6.7229 4.1025 0.7480 12 6 7.3546 4.3813 2.0400 13 6 6.0170 5.0840 0.1050 14 1 5.9035 5.0526 -0.9685 15 6 5.4472 6.1195 0.8331 16 7 5.6499 6.2006 2.1311 17 14 4.3930 7.3979 -0.0294 18 1 3.2327 6.7305 -0.6723 19 1 3.9068 8.3898 0.9631 20 1 5.2021 8.0900 -1.0646 21 6 4.3459 2.3651 -0.0001 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 1.9500 -0.8401 0.0004 26 1 4.1369 -0.6316 0.8833 27 1 4.1621 -0.6141 -0.9008 28 1 6.2247 0.4864 -0.9789 29 1 6.4127 -0.1735 0.6790 30 1 6.8186 2.8641 -0.9420 31 1 7.7914 2.3231 0.4469 32 1 6.6249 4.2456 2.8381 33 1 7.7194 5.4084 2.0520 34 1 8.1899 3.6974 2.1912 35 1 5.2514 6.9239 2.6399 36 1 3.9041 3.1486 0.6155 37 1 4.4990 2.7226 -1.0183 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259951998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:13 Heat of formation + Delta-G solvation = 0.530891 kcal Electronic energy + Delta-G solvation = -18126.348847 eV Core-core repulsion = 15325.724699 eV Total energy + Delta-G solvation = -2800.624148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.88516 -37.60238 -35.24391 -34.33472 -32.09043 -30.50691 -28.68280 -26.91819 -25.79258 -24.84576 -22.82335 -21.11227 -19.83361 -19.43859 -17.94243 -16.82461 -15.99530 -15.55066 -14.86166 -14.53117 -14.35988 -13.68404 -13.35011 -13.00828 -12.94358 -12.83115 -12.39561 -12.16261 -12.00330 -11.69438 -11.14831 -10.97927 -10.78012 -10.61635 -10.29980 -10.24494 -10.01911 -9.91759 -9.81823 -9.68102 -9.03229 -8.41047 -8.14259 -6.66857 -5.66132 -3.12455 2.92686 3.47718 3.51227 3.53139 3.57743 4.22268 4.58095 4.90383 5.03070 5.14089 5.21083 5.49605 5.55091 5.57484 5.67565 5.78574 5.84255 6.04046 6.07129 6.25267 6.29251 6.52332 6.57041 6.57549 6.72457 6.84646 6.86085 7.04744 7.33821 7.54416 7.83608 7.92179 8.24829 8.49726 8.89235 9.33755 9.94597 10.43952 11.38637 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021639 B = 0.007921 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.647519 B = 3533.840726 C = 4496.882354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.755 5.755 3 C 0.715 3.285 4 O -0.585 6.585 5 N -0.637 5.637 6 C 0.102 3.898 7 C -0.128 4.128 8 C -0.116 4.116 9 H 0.075 0.925 10 C 0.164 3.836 11 N -0.605 5.605 12 C 0.167 3.833 13 C -0.253 4.253 14 H 0.067 0.933 15 C 0.009 3.991 16 N -0.909 5.909 17 Si 0.898 3.102 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.285 1.285 21 C 0.146 3.854 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.394 0.606 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.023 0.977 33 H 0.052 0.948 34 H -0.010 1.010 35 H 0.252 0.748 36 H 0.087 0.913 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.542 -15.939 -3.472 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.412 5.412 3 C 0.416 3.584 4 O -0.462 6.462 5 N -0.376 5.376 6 C -0.021 4.021 7 C -0.167 4.167 8 C -0.138 4.138 9 H 0.094 0.906 10 C 0.036 3.964 11 N -0.328 5.328 12 C 0.023 3.977 13 C -0.383 4.383 14 H 0.085 0.915 15 C -0.189 4.189 16 N -0.554 5.554 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.211 1.211 21 C 0.024 3.976 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.226 0.774 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.008 0.992 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.140 -14.960 -3.338 15.646 hybrid contribution -0.570 0.182 -0.305 0.671 sum -3.710 -14.779 -3.642 15.666 Atomic orbital electron populations 1.21328 0.78651 1.01386 1.02200 1.44949 1.07393 1.07163 1.81680 1.15527 0.80586 0.84058 0.78188 1.90953 1.67007 1.30381 1.57906 1.47892 1.03163 1.09226 1.77279 1.21927 0.91791 0.88272 1.00127 1.22684 0.94024 0.98019 1.01936 1.23199 0.97155 0.93060 1.00420 0.90632 1.20783 0.93484 0.85596 0.96578 1.43940 1.60668 1.06145 1.21998 1.20865 0.92360 0.97764 0.86748 1.19082 1.26099 1.02405 0.90691 0.91532 1.25115 0.98653 0.99781 0.95347 1.70060 1.46608 1.33130 1.05563 0.86440 0.81218 0.81087 0.78545 1.20535 1.21646 1.21105 1.22091 0.88443 0.85961 1.01081 0.91074 0.92556 0.92590 0.77355 0.92469 0.92467 0.90771 0.90633 0.93622 0.93978 0.95820 0.92961 0.99173 0.93728 0.89502 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.20 10.70 59.85 0.64 1.84 16 2 N -0.76 -9.94 5.67 -72.07 -0.41 -10.35 16 3 C 0.71 13.26 8.49 -86.92 -0.74 12.52 16 4 O -0.59 -13.81 16.60 5.29 0.09 -13.72 16 5 N -0.64 -11.07 3.33 -176.23 -0.59 -11.65 16 6 C 0.10 1.28 6.15 -3.04 -0.02 1.26 16 7 C -0.13 -1.63 6.42 -24.87 -0.16 -1.79 16 8 C -0.12 -2.06 3.27 -88.48 -0.29 -2.35 16 9 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 10 C 0.16 3.21 5.24 -4.04 -0.02 3.19 16 11 N -0.60 -15.02 2.90 -181.12 -0.53 -15.54 16 12 C 0.17 4.15 8.99 59.85 0.54 4.68 16 13 C -0.25 -6.94 8.85 -15.06 -0.13 -7.07 16 14 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 15 C 0.01 0.26 5.38 -17.43 -0.09 0.17 16 16 N -0.91 -26.91 10.13 55.49 0.56 -26.35 16 17 Si 0.90 22.87 29.56 -169.99 -5.02 17.84 16 18 H -0.28 -7.27 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 21 C 0.15 2.97 5.52 -2.55 -0.01 2.95 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.39 3.89 7.82 -40.82 -0.32 3.57 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.88 8.04 -51.92 -0.42 0.46 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.87 7.93 -51.93 -0.41 0.46 16 31 H 0.04 0.74 7.86 -51.94 -0.41 0.33 16 32 H 0.02 0.63 7.43 -51.93 -0.39 0.25 16 33 H 0.05 1.41 7.04 -51.93 -0.37 1.05 16 34 H -0.01 -0.22 7.83 -51.93 -0.41 -0.63 16 35 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.09 2.20 8.04 -51.93 -0.42 1.78 16 37 H 0.06 1.30 7.96 -51.93 -0.41 0.89 16 LS Contribution 301.58 15.07 4.54 4.54 Total: -1.00 -33.80 301.58 -7.69 -41.49 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.05 Total: -1.66 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: -0.29 Total: 15.40 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.96 Total: -63.89 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.09 Total: -13.72 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.80 -7.69 -41.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.018 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds