Wall clock time and date at job start Mon Mar 30 2020 04:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34771 * 120.00017 * 2 1 4 4 O 1.21586 * 119.99907 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00157 * 180.02562 * 3 2 1 6 6 C 1.47027 * 125.64419 * 359.95383 * 5 3 2 7 7 C 1.54369 * 107.28611 * 181.13270 * 6 5 3 8 8 C 1.55160 * 102.92153 * 22.13658 * 7 6 5 9 9 H 1.09002 * 111.00002 * 82.64463 * 8 7 6 10 10 C 1.53001 * 111.00327 * 206.45207 * 8 7 6 11 11 N 1.46502 * 109.46989 * 181.82054 * 10 8 7 12 12 C 1.46499 * 119.99914 * 90.00011 * 11 10 8 13 13 C 1.36938 * 120.00231 * 270.00459 * 11 10 8 14 14 H 1.07999 * 120.00057 * 334.59976 * 13 11 10 15 15 C 1.38818 * 120.00009 * 154.60393 * 13 11 10 16 16 N 1.31618 * 119.99903 * 3.91697 * 15 13 11 17 17 Si 1.86800 * 119.99547 * 183.91431 * 15 13 11 18 18 H 1.48493 * 109.47192 * 60.00281 * 17 15 13 19 19 H 1.48503 * 109.46739 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47316 * 299.99485 * 17 15 13 21 21 C 1.47420 * 125.65225 * 180.02562 * 5 3 2 22 22 H 1.08999 * 109.47200 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46689 * 299.99649 * 1 2 3 24 24 H 1.08992 * 109.46973 * 59.99827 * 1 2 3 25 25 H 0.97003 * 119.99507 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.87973 * 300.51283 * 6 5 3 27 27 H 1.08994 * 109.87943 * 61.53025 * 6 5 3 28 28 H 1.09008 * 110.70384 * 263.79846 * 7 6 5 29 29 H 1.09000 * 110.76031 * 140.50996 * 7 6 5 30 30 H 1.09000 * 109.47170 * 61.82758 * 10 8 7 31 31 H 1.08989 * 109.47561 * 301.81980 * 10 8 7 32 32 H 1.08992 * 109.47396 * 264.46871 * 12 11 10 33 33 H 1.09003 * 109.47061 * 144.46562 * 12 11 10 34 34 H 1.09007 * 109.47249 * 24.47364 * 12 11 10 35 35 H 0.96996 * 119.99876 * 180.02562 * 16 15 13 36 36 H 1.09000 * 110.36800 * 36.99574 * 21 5 3 37 37 H 1.09003 * 110.36904 * 274.67557 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.3435 -0.0276 -0.0002 7 6 5.8084 0.4585 0.0281 8 6 5.6874 1.8910 0.6119 9 1 5.6330 1.8660 1.7002 10 6 6.8463 2.7735 0.1439 11 7 6.7229 4.1025 0.7480 12 6 7.3546 4.3813 2.0400 13 6 6.0170 5.0840 0.1050 14 1 5.9035 5.0526 -0.9685 15 6 5.4472 6.1195 0.8331 16 7 5.6499 6.2006 2.1311 17 14 4.3930 7.3979 -0.0294 18 1 3.2327 6.7305 -0.6723 19 1 3.9068 8.3898 0.9631 20 1 5.2021 8.0900 -1.0646 21 6 4.3459 2.3651 -0.0001 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 1.9500 -0.8401 0.0004 26 1 4.1369 -0.6316 0.8833 27 1 4.1621 -0.6141 -0.9008 28 1 6.2247 0.4864 -0.9789 29 1 6.4127 -0.1735 0.6790 30 1 6.8186 2.8641 -0.9420 31 1 7.7914 2.3231 0.4469 32 1 6.6249 4.2456 2.8381 33 1 7.7194 5.4084 2.0520 34 1 8.1899 3.6974 2.1912 35 1 5.2514 6.9239 2.6399 36 1 3.9041 3.1486 0.6155 37 1 4.4990 2.7226 -1.0183 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259951998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:13 Heat of formation + Delta-G solvation = -24.301231 kcal Electronic energy + Delta-G solvation = -18127.425649 eV Core-core repulsion = 15325.724699 eV Total energy + Delta-G solvation = -2801.700950 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.26168 -39.04901 -37.07758 -35.63229 -33.83187 -32.21827 -30.04467 -28.20245 -27.88284 -26.34457 -24.21352 -22.81735 -21.13009 -20.93734 -19.23130 -18.82902 -17.43608 -16.93083 -16.73057 -16.01085 -15.59355 -15.33080 -15.08923 -14.60165 -14.35233 -14.22406 -13.85412 -13.56392 -13.28276 -13.01209 -12.91902 -12.74006 -12.64565 -12.37860 -12.11994 -12.04789 -11.77236 -11.56374 -11.42439 -11.35180 -10.58107 -10.29700 -9.46536 -8.71431 -7.83587 -5.28454 1.38965 1.45498 1.48594 1.66348 2.08935 2.48867 3.11865 3.33881 3.62338 3.79346 3.98963 4.14501 4.36723 4.43116 4.54092 4.62358 4.72037 4.79430 4.88702 4.92309 4.96160 4.99090 5.06811 5.11885 5.30965 5.35104 5.46184 5.47073 5.54691 5.66435 5.84325 6.10291 6.37570 7.02061 7.20544 7.53464 7.92943 8.34548 9.19963 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021639 B = 0.007921 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.647519 B = 3533.840726 C = 4496.882354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.732 5.732 3 C 0.702 3.298 4 O -0.649 6.649 5 N -0.641 5.641 6 C 0.097 3.903 7 C -0.111 4.111 8 C -0.108 4.108 9 H 0.055 0.945 10 C 0.160 3.840 11 N -0.622 5.622 12 C 0.181 3.819 13 C -0.244 4.244 14 H 0.068 0.932 15 C -0.048 4.048 16 N -0.937 5.937 17 Si 0.949 3.051 18 H -0.292 1.292 19 H -0.295 1.295 20 H -0.269 1.269 21 C 0.153 3.847 22 H 0.123 0.877 23 H 0.040 0.960 24 H 0.044 0.956 25 H 0.415 0.585 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.052 0.948 31 H 0.073 0.927 32 H -0.007 1.007 33 H 0.022 0.978 34 H 0.030 0.970 35 H 0.244 0.756 36 H 0.021 0.979 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.731 -19.465 -4.651 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.389 5.389 3 C 0.404 3.596 4 O -0.532 6.532 5 N -0.378 5.378 6 C -0.024 4.024 7 C -0.149 4.149 8 C -0.130 4.130 9 H 0.073 0.927 10 C 0.034 3.966 11 N -0.346 5.346 12 C 0.037 3.963 13 C -0.375 4.375 14 H 0.086 0.914 15 C -0.243 4.243 16 N -0.585 5.585 17 Si 0.778 3.222 18 H -0.219 1.219 19 H -0.221 1.221 20 H -0.194 1.194 21 C 0.030 3.970 22 H 0.141 0.859 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.251 0.749 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.127 0.873 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.012 0.988 33 H 0.040 0.960 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.300 -18.595 -4.546 19.280 hybrid contribution -0.815 1.165 0.019 1.422 sum -3.115 -17.430 -4.527 18.275 Atomic orbital electron populations 1.21553 0.77172 1.04307 1.00923 1.44782 1.08204 1.06206 1.79752 1.15919 0.80964 0.84650 0.78079 1.90904 1.68464 1.33111 1.60710 1.47870 1.03172 1.09941 1.76821 1.22298 0.90502 0.86584 1.03026 1.22682 0.94912 0.94144 1.03199 1.22920 0.94536 0.96426 0.99128 0.92662 1.21015 0.95466 0.83475 0.96666 1.44199 1.60431 1.08094 1.21842 1.20566 0.92596 0.97014 0.86158 1.19335 1.24661 1.02604 0.90893 0.91397 1.25731 1.00412 1.02099 0.96023 1.70220 1.48035 1.33694 1.06534 0.85614 0.79562 0.79240 0.77795 1.21917 1.22076 1.19418 1.21736 0.90141 0.86098 0.99053 0.85913 0.94138 0.93723 0.74891 0.90028 0.89001 0.88984 0.87320 0.92932 0.90831 0.98831 0.95963 0.95205 0.94614 0.95996 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.09 10.70 127.77 1.37 3.46 16 2 N -0.73 -17.61 5.67 -500.19 -2.84 -20.45 16 3 C 0.70 25.93 8.49 179.06 1.52 27.45 16 4 O -0.65 -32.03 16.60 -3.99 -0.07 -32.09 16 5 N -0.64 -21.58 3.33 -829.73 -2.76 -24.34 16 6 C 0.10 1.99 6.15 86.74 0.53 2.53 16 7 C -0.11 -2.31 6.42 31.80 0.20 -2.10 16 8 C -0.11 -3.67 3.27 -9.41 -0.03 -3.70 16 9 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 10 C 0.16 5.94 5.24 86.38 0.45 6.39 16 11 N -0.62 -30.96 2.90 -726.94 -2.11 -33.07 16 12 C 0.18 9.08 8.99 127.77 1.15 10.23 16 13 C -0.24 -13.67 8.85 84.03 0.74 -12.92 16 14 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 15 C -0.05 -2.83 5.38 84.86 0.46 -2.37 16 16 N -0.94 -57.92 10.13 21.65 0.22 -57.70 16 17 Si 0.95 48.76 29.56 68.60 2.03 50.79 16 18 H -0.29 -15.47 7.11 99.48 0.71 -14.76 16 19 H -0.29 -15.21 7.11 99.48 0.71 -14.50 16 20 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 21 C 0.15 6.36 5.52 86.85 0.48 6.84 16 22 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 24 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.41 6.46 7.82 -92.71 -0.72 5.74 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.09 1.66 8.04 -2.38 -0.02 1.64 16 29 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 31 H 0.07 2.30 7.86 -2.39 -0.02 2.28 16 32 H -0.01 -0.37 7.43 -2.39 -0.02 -0.39 16 33 H 0.02 1.21 7.04 -2.39 -0.02 1.19 16 34 H 0.03 1.23 7.83 -2.38 -0.02 1.21 16 35 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.02 1.17 8.04 -2.39 -0.02 1.15 16 37 H 0.05 2.11 7.96 -2.39 -0.02 2.09 16 Total: -1.00 -80.19 301.58 1.67 -78.52 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 0.32 Total: 2.54 kcal Atomic # 6 Polarization: 28.92 SS G_CDS: 6.87 Total: 35.80 kcal Atomic # 7 Polarization: -128.07 SS G_CDS: -7.49 Total: -135.56 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.07 Total: -32.09 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.03 Total: 50.79 kcal Total: -80.19 1.67 -78.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.220 kcal (2) G-P(sol) polarization free energy of solvation -80.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds