Wall clock time and date at job start Mon Mar 30 2020 04:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34776 * 119.99710 * 2 1 4 4 O 1.21590 * 120.00236 * 4.97673 * 3 2 1 5 5 N 1.34776 * 120.00117 * 184.98124 * 3 2 1 6 6 C 1.46921 * 120.62865 * 354.77452 * 5 3 2 7 7 C 1.53186 * 108.77756 * 233.63010 * 6 5 3 8 8 C 1.53042 * 109.31333 * 305.36491 * 7 6 5 9 9 C 1.53043 * 109.53718 * 61.35900 * 8 7 6 10 10 H 1.08999 * 109.49564 * 58.62675 * 9 8 7 11 11 N 1.46903 * 109.49834 * 178.68748 * 9 8 7 12 12 C 1.46904 * 110.99933 * 205.00530 * 11 9 8 13 13 C 1.50696 * 109.46970 * 180.02562 * 12 11 9 14 14 H 1.08008 * 120.00215 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00134 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99738 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00359 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47225 * 89.99438 * 17 15 13 19 19 H 1.48497 * 109.47258 * 210.00041 * 17 15 13 20 20 H 1.48499 * 109.47019 * 329.99604 * 17 15 13 21 21 C 1.46926 * 120.63297 * 174.79234 * 5 3 2 22 22 H 1.09003 * 109.46617 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47341 * 300.00523 * 1 2 3 24 24 H 1.09003 * 109.46952 * 60.00548 * 1 2 3 25 25 H 0.97000 * 120.00111 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.59365 * 113.84102 * 6 5 3 27 27 H 1.09006 * 109.70539 * 353.48653 * 6 5 3 28 28 H 1.09000 * 109.50075 * 185.41298 * 7 6 5 29 29 H 1.09003 * 109.49804 * 65.30979 * 7 6 5 30 30 H 1.08999 * 109.45722 * 301.34502 * 8 7 6 31 31 H 1.08999 * 109.45485 * 181.37680 * 8 7 6 32 32 H 1.00900 * 110.99668 * 328.95520 * 11 9 8 33 33 H 1.09003 * 109.46720 * 299.99615 * 12 11 9 34 34 H 1.08996 * 109.47306 * 59.99588 * 12 11 9 35 35 H 0.96999 * 119.99502 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.58357 * 6.58169 * 21 5 3 37 37 H 1.08998 * 109.58939 * 246.15937 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5343 2.2182 0.0913 5 7 3.4828 1.1695 -0.1013 6 6 4.2359 -0.0920 -0.0976 7 6 5.3119 -0.0207 0.9904 8 6 6.1733 1.2249 0.7695 9 6 5.2988 2.4767 0.8720 10 1 4.8237 2.5092 1.8525 11 7 6.1320 3.6730 0.6911 12 6 5.5231 4.8417 1.3403 13 6 6.4037 6.0469 1.1333 14 1 7.3240 5.9539 0.5756 15 6 6.0353 7.2681 1.6566 16 7 4.9149 7.3812 2.3361 17 14 7.1272 8.7619 1.4007 18 1 6.7297 9.4572 0.1502 19 1 6.9766 9.6882 2.5515 20 1 8.5435 8.3277 1.2968 21 6 4.2227 2.4336 -0.2173 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.9501 -0.8400 0.0004 26 1 4.7078 -0.2389 -1.0691 27 1 3.5609 -0.9224 0.1099 28 1 5.9395 -0.9105 0.9404 29 1 4.8362 0.0351 1.9695 30 1 6.6291 1.1804 -0.2196 31 1 6.9550 1.2648 1.5281 32 1 7.0684 3.5165 1.0329 33 1 4.5421 5.0297 0.9038 34 1 5.4149 4.6492 2.4076 35 1 4.6555 8.2404 2.7040 36 1 3.5374 3.2712 -0.0874 37 1 4.6935 2.4928 -1.1986 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260013998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:01 Heat of formation + Delta-G solvation = -25.625186 kcal Electronic energy + Delta-G solvation = -17742.460584 eV Core-core repulsion = 14940.702224 eV Total energy + Delta-G solvation = -2801.758361 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.24514 -37.73431 -34.95667 -34.45001 -32.68014 -31.88261 -29.41244 -27.07382 -25.82277 -24.59207 -22.78885 -21.16867 -20.54830 -19.49749 -18.23593 -16.38419 -16.16642 -15.48310 -14.85681 -14.66684 -14.57744 -14.27461 -13.87824 -13.63837 -13.35268 -12.79052 -12.54442 -12.40674 -12.22578 -12.15074 -11.52678 -11.22540 -11.05952 -10.87968 -10.66547 -10.55694 -10.15752 -9.95863 -9.70988 -9.15998 -9.11926 -8.46712 -8.34719 -7.31296 -5.97036 -3.99753 2.76039 3.33998 3.36311 3.41774 3.45060 3.92157 4.46925 4.69842 4.87843 4.96495 5.10326 5.19777 5.38055 5.39150 5.44841 5.48002 5.65581 5.72228 5.79216 5.90958 5.95841 6.14712 6.21895 6.42412 6.48449 6.57960 6.65025 7.06466 7.32819 7.46654 7.82480 8.01529 8.18094 8.41821 8.63259 8.72984 9.09294 9.64904 11.13940 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031179 B = 0.005331 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.817073 B = 5250.803724 C = 5954.915352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.757 5.757 3 C 0.702 3.298 4 O -0.582 6.582 5 N -0.627 5.627 6 C 0.114 3.886 7 C -0.132 4.132 8 C -0.120 4.120 9 C 0.074 3.926 10 H 0.038 0.962 11 N -0.683 5.683 12 C 0.194 3.806 13 C -0.516 4.516 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.274 1.274 21 C 0.141 3.859 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.394 0.606 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.332 0.668 33 H 0.031 0.969 34 H -0.014 1.014 35 H 0.261 0.739 36 H 0.095 0.905 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.760 -19.849 -4.155 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.415 5.415 3 C 0.404 3.596 4 O -0.459 6.459 5 N -0.364 5.364 6 C -0.010 4.010 7 C -0.171 4.171 8 C -0.158 4.158 9 C -0.038 4.038 10 H 0.056 0.944 11 N -0.315 5.315 12 C 0.067 3.933 13 C -0.554 4.554 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.727 3.273 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.199 1.199 21 C 0.018 3.982 22 H 0.090 0.910 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.229 0.771 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.049 0.951 34 H 0.004 0.996 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.610 -18.754 -4.623 19.650 hybrid contribution 0.871 0.202 0.943 1.300 sum -2.739 -18.552 -3.680 19.111 Atomic orbital electron populations 1.21358 0.78550 1.01509 1.02328 1.45109 1.07552 1.07247 1.81584 1.15897 0.81673 0.84124 0.77941 1.90963 1.67418 1.30462 1.57027 1.47352 1.04000 1.07937 1.77155 1.21583 0.94162 0.85742 0.99523 1.21906 0.97414 0.98731 0.99054 1.21718 0.97798 0.93803 1.02491 1.21746 0.94227 0.90787 0.97026 0.94355 1.60577 1.04604 1.02915 1.63376 1.19626 0.95783 0.86446 0.91446 1.21172 1.07222 0.93206 1.33817 0.91950 1.25001 0.95344 0.99039 0.95196 1.69982 1.22538 1.24974 1.36002 0.86484 0.80728 0.82453 0.77625 1.20607 1.21354 1.19889 1.21533 0.93595 0.84367 0.98707 0.91010 0.92384 0.92537 0.77084 0.91273 0.91103 0.90806 0.91630 0.91069 0.91844 0.85059 0.95134 0.99617 0.92907 0.88636 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.04 10.71 59.85 0.64 1.68 16 2 N -0.76 -8.67 5.62 -72.06 -0.41 -9.08 16 3 C 0.70 11.58 8.29 -86.92 -0.72 10.85 16 4 O -0.58 -12.57 15.77 5.29 0.08 -12.48 16 5 N -0.63 -9.36 2.97 -178.51 -0.53 -9.89 16 6 C 0.11 1.15 6.38 -3.72 -0.02 1.12 16 7 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 8 C -0.12 -1.59 5.17 -26.69 -0.14 -1.73 16 9 C 0.07 1.33 2.64 -67.59 -0.18 1.15 16 10 H 0.04 0.79 7.80 -51.93 -0.41 0.38 16 11 N -0.68 -14.68 6.30 -107.86 -0.68 -15.36 16 12 C 0.19 5.24 5.24 -4.98 -0.03 5.21 16 13 C -0.52 -14.93 9.32 -34.44 -0.32 -15.25 16 14 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.72 13.29 55.43 0.74 -26.98 16 17 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.14 2.55 5.91 -3.71 -0.02 2.53 16 22 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.39 3.17 6.32 -40.82 -0.26 2.92 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.52 5.65 -51.93 -0.29 0.22 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.33 6.70 8.32 -39.29 -0.33 6.37 16 33 H 0.03 0.91 7.57 -51.93 -0.39 0.52 16 34 H -0.01 -0.40 8.06 -51.93 -0.42 -0.82 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.10 2.12 6.48 -51.93 -0.34 1.79 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 299.57 15.07 4.51 4.51 Total: -1.00 -34.87 299.57 -8.13 -43.00 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.78 Total: 3.55 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -1.05 Total: 5.60 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.88 Total: -61.31 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.48 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.87 -8.13 -43.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260013998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.376 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds