Wall clock time and date at job start Mon Mar 30 2020 04:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34776 * 119.99710 * 2 1 4 4 O 1.21590 * 120.00236 * 4.97673 * 3 2 1 5 5 N 1.34776 * 120.00117 * 184.98124 * 3 2 1 6 6 C 1.46921 * 120.62865 * 354.77452 * 5 3 2 7 7 C 1.53186 * 108.77756 * 233.63010 * 6 5 3 8 8 C 1.53042 * 109.31333 * 305.36491 * 7 6 5 9 9 C 1.53043 * 109.53718 * 61.35900 * 8 7 6 10 10 H 1.08999 * 109.49564 * 58.62675 * 9 8 7 11 11 N 1.46903 * 109.49834 * 178.68748 * 9 8 7 12 12 C 1.46904 * 110.99933 * 205.00530 * 11 9 8 13 13 C 1.50696 * 109.46970 * 180.02562 * 12 11 9 14 14 H 1.08008 * 120.00215 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00134 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99738 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00359 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47225 * 89.99438 * 17 15 13 19 19 H 1.48497 * 109.47258 * 210.00041 * 17 15 13 20 20 H 1.48499 * 109.47019 * 329.99604 * 17 15 13 21 21 C 1.46926 * 120.63297 * 174.79234 * 5 3 2 22 22 H 1.09003 * 109.46617 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47341 * 300.00523 * 1 2 3 24 24 H 1.09003 * 109.46952 * 60.00548 * 1 2 3 25 25 H 0.97000 * 120.00111 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.59365 * 113.84102 * 6 5 3 27 27 H 1.09006 * 109.70539 * 353.48653 * 6 5 3 28 28 H 1.09000 * 109.50075 * 185.41298 * 7 6 5 29 29 H 1.09003 * 109.49804 * 65.30979 * 7 6 5 30 30 H 1.08999 * 109.45722 * 301.34502 * 8 7 6 31 31 H 1.08999 * 109.45485 * 181.37680 * 8 7 6 32 32 H 1.00900 * 110.99668 * 328.95520 * 11 9 8 33 33 H 1.09003 * 109.46720 * 299.99615 * 12 11 9 34 34 H 1.08996 * 109.47306 * 59.99588 * 12 11 9 35 35 H 0.96999 * 119.99502 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.58357 * 6.58169 * 21 5 3 37 37 H 1.08998 * 109.58939 * 246.15937 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5343 2.2182 0.0913 5 7 3.4828 1.1695 -0.1013 6 6 4.2359 -0.0920 -0.0976 7 6 5.3119 -0.0207 0.9904 8 6 6.1733 1.2249 0.7695 9 6 5.2988 2.4767 0.8720 10 1 4.8237 2.5092 1.8525 11 7 6.1320 3.6730 0.6911 12 6 5.5231 4.8417 1.3403 13 6 6.4037 6.0469 1.1333 14 1 7.3240 5.9539 0.5756 15 6 6.0353 7.2681 1.6566 16 7 4.9149 7.3812 2.3361 17 14 7.1272 8.7619 1.4007 18 1 6.7297 9.4572 0.1502 19 1 6.9766 9.6882 2.5515 20 1 8.5435 8.3277 1.2968 21 6 4.2227 2.4336 -0.2173 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.9501 -0.8400 0.0004 26 1 4.7078 -0.2389 -1.0691 27 1 3.5609 -0.9224 0.1099 28 1 5.9395 -0.9105 0.9404 29 1 4.8362 0.0351 1.9695 30 1 6.6291 1.1804 -0.2196 31 1 6.9550 1.2648 1.5281 32 1 7.0684 3.5165 1.0329 33 1 4.5421 5.0297 0.9038 34 1 5.4149 4.6492 2.4076 35 1 4.6555 8.2404 2.7040 36 1 3.5374 3.2712 -0.0874 37 1 4.6935 2.4928 -1.1986 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260013998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:01 Heat of formation + Delta-G solvation = -53.784469 kcal Electronic energy + Delta-G solvation = -17743.681662 eV Core-core repulsion = 14940.702224 eV Total energy + Delta-G solvation = -2802.979439 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.48207 -39.08213 -36.57783 -35.69520 -34.60835 -33.21086 -30.99484 -28.41439 -27.49793 -25.72441 -24.42438 -22.79638 -21.92678 -20.69889 -19.36254 -18.56116 -17.41302 -16.72442 -16.71497 -16.31975 -15.74875 -15.43854 -15.25004 -15.10092 -14.47307 -14.36198 -14.08720 -13.77486 -13.65240 -13.34886 -13.05928 -12.81695 -12.74895 -12.39992 -12.17724 -11.95593 -11.86182 -11.47612 -11.29190 -11.17235 -10.69036 -10.31256 -9.57898 -9.18536 -8.23640 -6.36869 1.40051 1.43520 1.54498 1.61508 2.05841 2.39234 2.95989 3.09459 3.48042 3.79744 3.93901 4.03779 4.20417 4.28628 4.42282 4.54262 4.63405 4.67027 4.79749 4.85155 4.92810 4.95718 5.00578 5.08196 5.17463 5.21563 5.37175 5.45254 5.46972 5.61765 5.93186 5.99364 6.39690 6.69182 6.87398 6.96401 7.34910 7.51593 8.88544 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031179 B = 0.005331 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.817073 B = 5250.803724 C = 5954.915352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.734 5.734 3 C 0.691 3.309 4 O -0.647 6.647 5 N -0.626 5.626 6 C 0.106 3.894 7 C -0.125 4.125 8 C -0.112 4.112 9 C 0.075 3.925 10 H 0.005 0.995 11 N -0.676 5.676 12 C 0.212 3.788 13 C -0.535 4.535 14 H 0.072 0.928 15 C -0.004 4.004 16 N -0.939 5.939 17 Si 0.980 3.020 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.257 1.257 21 C 0.150 3.850 22 H 0.122 0.878 23 H 0.039 0.961 24 H 0.045 0.955 25 H 0.415 0.585 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.343 0.657 33 H -0.011 1.011 34 H -0.046 1.046 35 H 0.265 0.735 36 H 0.039 0.961 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.940 -22.422 -5.098 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.393 5.393 3 C 0.392 3.608 4 O -0.529 6.529 5 N -0.363 5.363 6 C -0.015 4.015 7 C -0.164 4.164 8 C -0.150 4.150 9 C -0.036 4.036 10 H 0.023 0.977 11 N -0.308 5.308 12 C 0.084 3.916 13 C -0.573 4.573 14 H 0.090 0.910 15 C -0.202 4.202 16 N -0.579 5.579 17 Si 0.804 3.196 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.181 1.181 21 C 0.025 3.975 22 H 0.140 0.860 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.254 0.746 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.136 0.864 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.161 0.839 33 H 0.007 0.993 34 H -0.029 1.029 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.760 -21.438 -5.577 22.221 hybrid contribution 0.246 0.916 1.238 1.559 sum -1.514 -20.522 -4.340 21.031 Atomic orbital electron populations 1.21562 0.77311 1.04315 1.00946 1.44945 1.08237 1.06367 1.79763 1.16279 0.82140 0.84619 0.77788 1.90921 1.68877 1.33196 1.59857 1.47346 1.03804 1.08515 1.76586 1.22023 0.94583 0.84026 1.00865 1.21919 0.97417 0.98653 0.98412 1.21688 0.97414 0.92157 1.03702 1.21821 0.94688 0.91916 0.95211 0.97679 1.60406 1.05304 1.02880 1.62211 1.19187 0.94191 0.88824 0.89400 1.21567 1.07683 0.94053 1.34045 0.90993 1.26090 0.96817 1.02797 0.94463 1.70147 1.24684 1.26065 1.37026 0.85229 0.79096 0.77652 0.77668 1.19921 1.20776 1.18051 1.21158 0.92573 0.84705 0.99015 0.85958 0.94234 0.93626 0.74618 0.88881 0.87496 0.86377 0.92839 0.89495 0.91101 0.83869 0.99285 1.02888 0.92668 0.94242 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.86 10.71 127.77 1.37 3.23 16 2 N -0.73 -15.58 5.62 -500.17 -2.81 -18.39 16 3 C 0.69 23.16 8.29 179.05 1.49 24.65 16 4 O -0.65 -29.95 15.77 -4.00 -0.06 -30.02 16 5 N -0.63 -18.50 2.97 -836.94 -2.49 -20.99 16 6 C 0.11 1.76 6.38 86.36 0.55 2.31 16 7 C -0.13 -2.13 6.08 30.67 0.19 -1.94 16 8 C -0.11 -2.71 5.17 30.62 0.16 -2.55 16 9 C 0.08 2.80 2.64 44.99 0.12 2.91 16 10 H 0.01 0.23 7.80 -2.39 -0.02 0.21 16 11 N -0.68 -30.08 6.30 -495.17 -3.12 -33.19 16 12 C 0.21 12.23 5.24 85.55 0.45 12.68 16 13 C -0.54 -31.85 9.32 25.60 0.24 -31.61 16 14 H 0.07 4.05 7.81 -2.91 -0.02 4.03 16 15 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 16 N -0.94 -60.36 13.29 21.45 0.28 -60.08 16 17 Si 0.98 45.83 29.54 68.60 2.03 47.85 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 21 C 0.15 5.71 5.91 86.36 0.51 6.22 16 22 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.41 5.12 6.32 -92.71 -0.59 4.54 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.11 1.01 5.65 -2.38 -0.01 1.00 16 28 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 32 H 0.34 13.89 8.32 -89.69 -0.75 13.14 16 33 H -0.01 -0.72 7.57 -2.39 -0.02 -0.74 16 34 H -0.05 -2.92 8.06 -2.39 -0.02 -2.94 16 35 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 36 H 0.04 1.93 6.48 -2.39 -0.02 1.92 16 37 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -83.52 299.57 -0.91 -84.42 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -0.26 Total: 14.27 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 5.53 Total: 16.12 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -8.13 Total: -132.66 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.06 Total: -30.02 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -83.52 -0.91 -84.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260013998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.639 kcal (2) G-P(sol) polarization free energy of solvation -83.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds