Wall clock time and date at job start Mon Mar 30 2020 04:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34774 * 119.99766 * 2 1 4 4 O 1.21593 * 120.00233 * 5.07894 * 3 2 1 5 5 N 1.34778 * 120.00068 * 185.07021 * 3 2 1 6 6 C 1.46923 * 120.62661 * 354.97200 * 5 3 2 7 7 C 1.53194 * 108.77557 * 126.41127 * 6 5 3 8 8 C 1.53039 * 109.31030 * 54.63190 * 7 6 5 9 9 C 1.53040 * 109.54033 * 298.63470 * 8 7 6 10 10 H 1.09000 * 109.49740 * 301.41798 * 9 8 7 11 11 N 1.46897 * 109.50008 * 181.35277 * 9 8 7 12 12 C 1.46895 * 111.00240 * 155.06291 * 11 9 8 13 13 C 1.50702 * 109.47006 * 179.97438 * 12 11 9 14 14 H 1.07991 * 120.00249 * 0.02562 * 13 12 11 15 15 C 1.37887 * 119.99758 * 180.02562 * 13 12 11 16 16 N 1.31507 * 119.99821 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00060 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47298 * 89.99720 * 17 15 13 19 19 H 1.48500 * 109.47438 * 210.00090 * 17 15 13 20 20 H 1.48505 * 109.46925 * 330.00205 * 17 15 13 21 21 C 1.46922 * 120.62826 * 174.98977 * 5 3 2 22 22 H 1.08999 * 109.47162 * 59.99962 * 1 2 3 23 23 H 1.08999 * 109.47302 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47646 * 299.99792 * 1 2 3 25 25 H 0.96997 * 119.99674 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.59081 * 6.62031 * 6 5 3 27 27 H 1.09004 * 109.58322 * 246.19880 * 6 5 3 28 28 H 1.08994 * 109.49598 * 294.68027 * 7 6 5 29 29 H 1.09003 * 109.49400 * 174.58029 * 7 6 5 30 30 H 1.09000 * 109.45943 * 178.61444 * 8 7 6 31 31 H 1.09001 * 109.45131 * 58.65509 * 8 7 6 32 32 H 1.00907 * 111.00175 * 31.10751 * 11 9 8 33 33 H 1.08997 * 109.47386 * 299.99820 * 12 11 9 34 34 H 1.09006 * 109.47032 * 60.00030 * 12 11 9 35 35 H 0.97000 * 120.00227 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.58770 * 113.80710 * 21 5 3 37 37 H 1.08998 * 109.59027 * 353.37680 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5345 2.2182 0.0932 5 7 3.4827 1.1696 -0.1032 6 6 4.2354 -0.0922 -0.1057 7 6 5.1352 -0.1270 -1.3450 8 6 6.0113 1.1276 -1.3697 9 6 5.1227 2.3708 -1.4528 10 1 4.5049 2.3172 -2.3493 11 7 5.9651 3.5729 -1.5091 12 6 5.2567 4.6822 -2.1612 13 6 6.1502 5.8952 -2.1998 14 1 7.1449 5.8467 -1.7822 15 6 5.6976 7.0670 -2.7685 16 7 6.4774 8.1253 -2.8027 17 14 3.9768 7.1511 -3.4904 18 1 3.0198 7.5824 -2.4399 19 1 3.9565 8.1270 -4.6094 20 1 3.5859 5.8104 -3.9956 21 6 4.2226 2.4339 -0.2148 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.9500 -0.8400 -0.0004 26 1 3.5410 -0.9319 -0.1346 27 1 4.8488 -0.1535 0.7932 28 1 4.5174 -0.1571 -2.2424 29 1 5.7694 -1.0129 -1.3093 30 1 6.6700 1.0935 -2.2375 31 1 6.6107 1.1697 -0.4603 32 1 6.8401 3.3799 -1.9733 33 1 4.9894 4.3949 -3.1781 34 1 4.3519 4.9156 -1.5999 35 1 6.1592 8.9496 -3.2030 36 1 4.8351 2.5787 0.6752 37 1 3.5198 3.2610 -0.3157 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260014001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:03 Heat of formation + Delta-G solvation = -21.461645 kcal Electronic energy + Delta-G solvation = -17829.557823 eV Core-core repulsion = 15027.980007 eV Total energy + Delta-G solvation = -2801.577816 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.35551 -37.86150 -35.10968 -34.56267 -32.68619 -31.98444 -29.73766 -27.27125 -26.18486 -24.70268 -22.72230 -20.95841 -20.67221 -19.58568 -18.35608 -16.76297 -16.28188 -15.56601 -15.07258 -14.78908 -14.57696 -14.33735 -13.91140 -13.68762 -13.47410 -12.93238 -12.62539 -12.51586 -12.46159 -12.33764 -11.85121 -11.45096 -11.15993 -10.96124 -10.68743 -10.46056 -10.10063 -10.04793 -9.76150 -9.26917 -9.23463 -8.56484 -8.47455 -7.51785 -6.02913 -4.00842 2.65739 3.24000 3.34883 3.41329 3.45698 3.81914 4.46628 4.59264 4.79655 4.86140 5.02485 5.05042 5.29061 5.31295 5.33956 5.40596 5.54153 5.63389 5.68368 5.80191 5.85228 6.03057 6.10735 6.31418 6.36674 6.44714 6.51446 6.84047 6.95407 7.04766 7.63278 7.87416 7.93372 8.31755 8.61794 8.66398 9.04589 9.59507 11.10221 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026034 B = 0.006247 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.264902 B = 4481.069009 C = 5292.020019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.756 5.756 3 C 0.704 3.296 4 O -0.585 6.585 5 N -0.627 5.627 6 C 0.113 3.887 7 C -0.132 4.132 8 C -0.120 4.120 9 C 0.071 3.929 10 H 0.038 0.962 11 N -0.673 5.673 12 C 0.163 3.837 13 C -0.516 4.516 14 H 0.080 0.920 15 C 0.070 3.930 16 N -0.900 5.900 17 Si 0.875 3.125 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.268 1.268 21 C 0.140 3.860 22 H 0.056 0.944 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.394 0.606 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.339 0.661 33 H -0.016 1.016 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.074 0.926 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.749 -22.136 4.291 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.414 5.414 3 C 0.405 3.595 4 O -0.462 6.462 5 N -0.365 5.365 6 C -0.011 4.011 7 C -0.171 4.171 8 C -0.158 4.158 9 C -0.040 4.040 10 H 0.056 0.944 11 N -0.305 5.305 12 C 0.036 3.964 13 C -0.554 4.554 14 H 0.098 0.902 15 C -0.132 4.132 16 N -0.539 5.539 17 Si 0.702 3.298 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.193 1.193 21 C 0.017 3.983 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.230 0.770 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.158 0.842 33 H 0.002 0.998 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.380 -20.928 4.919 22.730 hybrid contribution -0.659 -0.558 -1.399 1.644 sum -8.039 -21.486 3.520 23.209 Atomic orbital electron populations 1.21362 0.78493 1.01598 1.02315 1.45108 1.07587 1.07263 1.81468 1.15887 0.81579 0.84130 0.77930 1.90947 1.67449 1.30533 1.57275 1.47347 1.04097 1.07968 1.77068 1.21616 0.94897 0.85654 0.98897 1.21908 0.98446 0.98678 0.98065 1.21710 0.97787 0.93495 1.02850 1.21799 0.94658 0.90822 0.96759 0.94426 1.60358 1.06307 1.04402 1.59413 1.20072 0.95209 0.89901 0.91255 1.21043 1.02171 0.93865 1.38343 0.90227 1.24880 0.97199 0.95526 0.95551 1.69894 1.36500 1.02073 1.45463 0.86860 0.85448 0.78159 0.79309 1.19958 1.21212 1.19305 1.21533 0.94436 0.84207 0.98126 0.92537 0.90934 0.92377 0.76996 0.91031 0.91089 0.91646 0.90661 0.91664 0.90828 0.84207 0.99828 0.95788 0.92654 0.90791 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.98 10.71 59.85 0.64 1.62 16 2 N -0.76 -8.14 5.63 -72.07 -0.41 -8.54 16 3 C 0.70 10.96 8.30 -86.92 -0.72 10.24 16 4 O -0.58 -11.96 15.79 5.28 0.08 -11.88 16 5 N -0.63 -8.82 2.97 -178.50 -0.53 -9.35 16 6 C 0.11 1.06 6.43 -3.71 -0.02 1.04 16 7 C -0.13 -1.25 6.08 -26.61 -0.16 -1.41 16 8 C -0.12 -1.49 5.17 -26.69 -0.14 -1.63 16 9 C 0.07 1.20 2.64 -67.59 -0.18 1.02 16 10 H 0.04 0.70 7.80 -51.93 -0.41 0.29 16 11 N -0.67 -13.82 6.30 -107.87 -0.68 -14.50 16 12 C 0.16 4.09 4.31 -4.98 -0.02 4.07 16 13 C -0.52 -15.04 9.87 -34.44 -0.34 -15.38 16 14 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 15 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 16 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 17 Si 0.88 22.55 27.47 -169.99 -4.67 17.89 16 18 H -0.27 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 20 H -0.27 -6.76 6.54 56.52 0.37 -6.39 16 21 C 0.14 2.39 5.89 -3.71 -0.02 2.37 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.39 2.93 6.29 -40.82 -0.26 2.67 16 26 H 0.07 0.47 5.57 -51.93 -0.29 0.18 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.34 6.62 8.33 -39.29 -0.33 6.29 16 33 H -0.02 -0.40 7.12 -51.93 -0.37 -0.77 16 34 H 0.02 0.63 6.99 -51.93 -0.36 0.27 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.92 6.51 -51.93 -0.34 1.58 16 LS Contribution 295.93 15.07 4.46 4.46 Total: -1.00 -35.05 295.93 -7.77 -42.82 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.74 Total: 2.56 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.06 Total: 3.93 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.84 Total: -59.79 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.05 -7.77 -42.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260014001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.361 kcal (2) G-P(sol) polarization free energy of solvation -35.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds