Wall clock time and date at job start Mon Mar 30 2020 04:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34774 * 119.99766 * 2 1 4 4 O 1.21593 * 120.00233 * 5.07894 * 3 2 1 5 5 N 1.34778 * 120.00068 * 185.07021 * 3 2 1 6 6 C 1.46923 * 120.62661 * 354.97200 * 5 3 2 7 7 C 1.53194 * 108.77557 * 126.41127 * 6 5 3 8 8 C 1.53039 * 109.31030 * 54.63190 * 7 6 5 9 9 C 1.53040 * 109.54033 * 298.63470 * 8 7 6 10 10 H 1.09000 * 109.49740 * 301.41798 * 9 8 7 11 11 N 1.46897 * 109.50008 * 181.35277 * 9 8 7 12 12 C 1.46895 * 111.00240 * 155.06291 * 11 9 8 13 13 C 1.50702 * 109.47006 * 179.97438 * 12 11 9 14 14 H 1.07991 * 120.00249 * 0.02562 * 13 12 11 15 15 C 1.37887 * 119.99758 * 180.02562 * 13 12 11 16 16 N 1.31507 * 119.99821 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00060 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47298 * 89.99720 * 17 15 13 19 19 H 1.48500 * 109.47438 * 210.00090 * 17 15 13 20 20 H 1.48505 * 109.46925 * 330.00205 * 17 15 13 21 21 C 1.46922 * 120.62826 * 174.98977 * 5 3 2 22 22 H 1.08999 * 109.47162 * 59.99962 * 1 2 3 23 23 H 1.08999 * 109.47302 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47646 * 299.99792 * 1 2 3 25 25 H 0.96997 * 119.99674 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.59081 * 6.62031 * 6 5 3 27 27 H 1.09004 * 109.58322 * 246.19880 * 6 5 3 28 28 H 1.08994 * 109.49598 * 294.68027 * 7 6 5 29 29 H 1.09003 * 109.49400 * 174.58029 * 7 6 5 30 30 H 1.09000 * 109.45943 * 178.61444 * 8 7 6 31 31 H 1.09001 * 109.45131 * 58.65509 * 8 7 6 32 32 H 1.00907 * 111.00175 * 31.10751 * 11 9 8 33 33 H 1.08997 * 109.47386 * 299.99820 * 12 11 9 34 34 H 1.09006 * 109.47032 * 60.00030 * 12 11 9 35 35 H 0.97000 * 120.00227 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.58770 * 113.80710 * 21 5 3 37 37 H 1.08998 * 109.59027 * 353.37680 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5345 2.2182 0.0932 5 7 3.4827 1.1696 -0.1032 6 6 4.2354 -0.0922 -0.1057 7 6 5.1352 -0.1270 -1.3450 8 6 6.0113 1.1276 -1.3697 9 6 5.1227 2.3708 -1.4528 10 1 4.5049 2.3172 -2.3493 11 7 5.9651 3.5729 -1.5091 12 6 5.2567 4.6822 -2.1612 13 6 6.1502 5.8952 -2.1998 14 1 7.1449 5.8467 -1.7822 15 6 5.6976 7.0670 -2.7685 16 7 6.4774 8.1253 -2.8027 17 14 3.9768 7.1511 -3.4904 18 1 3.0198 7.5824 -2.4399 19 1 3.9565 8.1270 -4.6094 20 1 3.5859 5.8104 -3.9956 21 6 4.2226 2.4339 -0.2148 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.9500 -0.8400 -0.0004 26 1 3.5410 -0.9319 -0.1346 27 1 4.8488 -0.1535 0.7932 28 1 4.5174 -0.1571 -2.2424 29 1 5.7694 -1.0129 -1.3093 30 1 6.6700 1.0935 -2.2375 31 1 6.6107 1.1697 -0.4603 32 1 6.8401 3.3799 -1.9733 33 1 4.9894 4.3949 -3.1781 34 1 4.3519 4.9156 -1.5999 35 1 6.1592 8.9496 -3.2030 36 1 4.8351 2.5787 0.6752 37 1 3.5198 3.2610 -0.3157 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260014001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:02 Heat of formation + Delta-G solvation = -49.867658 kcal Electronic energy + Delta-G solvation = -17830.789600 eV Core-core repulsion = 15027.980007 eV Total energy + Delta-G solvation = -2802.809593 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.48826 -39.10511 -36.61667 -35.69353 -34.62132 -33.26921 -31.24851 -28.65502 -27.58491 -25.73393 -24.12383 -22.63904 -21.95227 -20.68476 -19.39766 -18.94964 -17.42757 -16.76952 -16.65661 -16.26938 -15.80306 -15.54272 -15.33154 -14.95470 -14.66942 -14.48324 -14.27376 -13.82296 -13.64587 -13.52074 -13.07875 -12.88272 -12.79475 -12.33693 -12.02678 -11.92129 -11.84594 -11.54426 -11.32839 -11.26875 -10.85616 -10.31013 -9.58598 -9.20798 -8.35076 -6.38267 1.28245 1.30870 1.40285 1.60242 2.06725 2.28154 2.93919 2.99002 3.41593 3.78508 3.92891 4.03159 4.17505 4.28721 4.41672 4.53522 4.63247 4.65601 4.72219 4.79552 4.84935 4.91679 4.94729 5.04427 5.06303 5.16706 5.35719 5.43975 5.46205 5.49629 5.91687 5.94226 6.50137 6.61624 6.73024 6.95410 7.26747 7.50690 8.81397 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026034 B = 0.006247 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.264902 B = 4481.069009 C = 5292.020019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.735 5.735 3 C 0.692 3.308 4 O -0.645 6.645 5 N -0.626 5.626 6 C 0.106 3.894 7 C -0.124 4.124 8 C -0.115 4.115 9 C 0.074 3.926 10 H 0.020 0.980 11 N -0.678 5.678 12 C 0.177 3.823 13 C -0.525 4.525 14 H 0.047 0.953 15 C 0.016 3.984 16 N -0.941 5.941 17 Si 0.940 3.060 18 H -0.272 1.272 19 H -0.272 1.272 20 H -0.260 1.260 21 C 0.147 3.853 22 H 0.041 0.959 23 H 0.120 0.880 24 H 0.044 0.956 25 H 0.414 0.586 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.346 0.654 33 H -0.018 1.018 34 H 0.011 0.989 35 H 0.269 0.731 36 H 0.075 0.925 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.438 -25.597 4.141 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.394 5.394 3 C 0.394 3.606 4 O -0.527 6.527 5 N -0.363 5.363 6 C -0.015 4.015 7 C -0.162 4.162 8 C -0.152 4.152 9 C -0.037 4.037 10 H 0.038 0.962 11 N -0.309 5.309 12 C 0.049 3.951 13 C -0.563 4.563 14 H 0.065 0.935 15 C -0.182 4.182 16 N -0.582 5.582 17 Si 0.764 3.236 18 H -0.198 1.198 19 H -0.197 1.197 20 H -0.184 1.184 21 C 0.022 3.978 22 H 0.059 0.941 23 H 0.138 0.862 24 H 0.063 0.937 25 H 0.253 0.747 26 H 0.125 0.875 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.133 0.867 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.165 0.835 33 H 0.000 1.000 34 H 0.029 0.971 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.044 -24.486 4.771 26.211 hybrid contribution -0.381 0.468 -1.289 1.424 sum -8.425 -24.018 3.481 25.690 Atomic orbital electron populations 1.21551 0.77341 1.04265 1.00975 1.44966 1.08234 1.06487 1.79744 1.16242 0.81992 0.84607 0.77805 1.90904 1.68790 1.33039 1.59920 1.47335 1.03901 1.08514 1.76521 1.22019 0.95584 0.84193 0.99744 1.21903 0.98300 0.98316 0.97727 1.21695 0.97550 0.92401 1.03603 1.21857 0.94802 0.91310 0.95725 0.96191 1.60203 1.06831 1.05223 1.58690 1.19739 0.94118 0.90091 0.91192 1.21305 1.01487 0.95724 1.37818 0.93509 1.25718 1.01323 0.95131 0.96020 1.70014 1.38623 1.02861 1.46663 0.85830 0.80200 0.78753 0.78829 1.19787 1.19720 1.18408 1.21203 0.93538 0.84802 0.98246 0.94061 0.86155 0.93675 0.74659 0.87476 0.89372 0.92200 0.86714 0.90975 0.90027 0.83520 1.00050 0.97085 0.92212 0.90721 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.66 10.71 127.77 1.37 3.03 16 2 N -0.74 -13.98 5.63 -500.19 -2.81 -16.80 16 3 C 0.69 21.10 8.30 179.05 1.49 22.58 16 4 O -0.64 -27.21 15.79 -4.01 -0.06 -27.28 16 5 N -0.63 -16.74 2.97 -836.91 -2.49 -19.23 16 6 C 0.11 1.56 6.43 86.36 0.56 2.12 16 7 C -0.12 -1.82 6.08 30.67 0.19 -1.63 16 8 C -0.11 -2.53 5.17 30.62 0.16 -2.38 16 9 C 0.07 2.47 2.64 44.99 0.12 2.59 16 10 H 0.02 0.74 7.80 -2.39 -0.02 0.73 16 11 N -0.68 -28.19 6.30 -495.18 -3.12 -31.31 16 12 C 0.18 9.08 4.31 85.56 0.37 9.45 16 13 C -0.53 -31.54 9.87 25.60 0.25 -31.28 16 14 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 15 C 0.02 0.99 5.47 84.66 0.46 1.46 16 16 N -0.94 -60.15 13.96 21.45 0.30 -59.85 16 17 Si 0.94 47.20 27.47 68.60 1.88 49.09 16 18 H -0.27 -13.56 7.11 99.48 0.71 -12.86 16 19 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.26 -12.59 6.54 99.48 0.65 -11.94 16 21 C 0.15 5.07 5.89 86.36 0.51 5.58 16 22 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.41 4.37 6.29 -92.71 -0.58 3.79 16 26 H 0.11 0.83 5.57 -2.39 -0.01 0.81 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.35 13.53 8.33 -89.69 -0.75 12.78 16 33 H -0.02 -0.93 7.12 -2.39 -0.02 -0.94 16 34 H 0.01 0.60 6.99 -2.38 -0.02 0.58 16 35 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 36 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.05 2.07 6.51 -2.39 -0.02 2.05 16 Total: -1.00 -80.73 295.93 -1.15 -81.88 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -0.31 Total: 11.98 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 5.47 Total: 11.51 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -8.12 Total: -127.19 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.06 Total: -27.28 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.88 Total: 49.09 kcal Total: -80.73 -1.15 -81.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260014001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.015 kcal (2) G-P(sol) polarization free energy of solvation -80.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds