Wall clock time and date at job start Mon Mar 30 2020 04:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34775 * 119.99792 * 2 1 4 4 O 1.21590 * 120.00210 * 354.92715 * 3 2 1 5 5 N 1.34776 * 119.99904 * 174.92617 * 3 2 1 6 6 C 1.46932 * 120.63433 * 5.03537 * 5 3 2 7 7 C 1.53191 * 108.77489 * 233.58761 * 6 5 3 8 8 C 1.53040 * 109.31020 * 305.35917 * 7 6 5 9 9 C 1.53039 * 109.53894 * 61.36784 * 8 7 6 10 10 H 1.08998 * 109.49565 * 58.58654 * 9 8 7 11 11 C 1.53002 * 109.49853 * 178.64786 * 9 8 7 12 12 N 1.46500 * 109.47176 * 185.00014 * 11 9 8 13 13 C 1.36934 * 119.99915 * 180.02562 * 12 11 9 14 14 H 1.08005 * 120.00266 * 359.97438 * 13 12 11 15 15 C 1.38813 * 120.00072 * 180.02562 * 13 12 11 16 16 N 1.31623 * 119.99863 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00158 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46980 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47592 * 119.99803 * 17 15 13 20 20 H 1.48504 * 109.46861 * 239.99702 * 17 15 13 21 21 C 1.46928 * 120.63387 * 184.75250 * 5 3 2 22 22 H 1.09001 * 109.47508 * 300.00000 * 1 2 3 23 23 H 1.09000 * 109.46914 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47720 * 59.99853 * 1 2 3 25 25 H 0.97003 * 120.00440 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.57919 * 353.36796 * 6 5 3 27 27 H 1.08994 * 109.58914 * 113.64872 * 6 5 3 28 28 H 1.09002 * 109.49979 * 65.31350 * 7 6 5 29 29 H 1.09001 * 109.49230 * 185.40991 * 7 6 5 30 30 H 1.08999 * 109.45906 * 181.39009 * 8 7 6 31 31 H 1.08999 * 109.46347 * 301.36092 * 8 7 6 32 32 H 1.09000 * 109.47020 * 305.00131 * 11 9 8 33 33 H 1.08999 * 109.47128 * 64.99777 * 11 9 8 34 34 H 0.96994 * 120.00042 * 0.02562 * 12 11 9 35 35 H 0.96997 * 120.00046 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.58901 * 246.20560 * 21 5 3 37 37 H 1.09000 * 109.58202 * 6.62816 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5344 2.2182 -0.0931 5 7 3.4826 1.1695 0.1032 6 6 4.2355 -0.0922 0.1057 7 6 5.1353 -0.1270 1.3450 8 6 6.0113 1.1276 1.3698 9 6 5.1227 2.3708 1.4528 10 1 4.5050 2.3172 2.3493 11 6 6.0002 3.6228 1.5115 12 7 5.1550 4.8026 1.7109 13 6 5.7232 6.0457 1.7948 14 1 6.7946 6.1563 1.7142 15 6 4.9224 7.1636 1.9843 16 7 3.6169 7.0288 2.0829 17 14 5.6975 8.8593 2.0979 18 1 7.1711 8.7405 1.9571 19 1 5.1640 9.7213 1.0127 20 1 5.3737 9.4643 3.4149 21 6 4.2231 2.4341 0.2092 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 1.9500 -0.8400 -0.0004 26 1 3.5410 -0.9319 0.1347 27 1 4.8469 -0.1547 -0.7944 28 1 4.5174 -0.1571 2.2425 29 1 5.7694 -1.0129 1.3094 30 1 6.6701 1.0934 2.2375 31 1 6.6106 1.1700 0.4603 32 1 6.7032 3.5352 2.3398 33 1 6.5512 3.7244 0.5765 34 1 4.1929 4.7033 1.7836 35 1 3.0572 7.8100 2.2150 36 1 4.8356 2.5746 -0.6814 37 1 3.5206 3.2618 0.3064 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260049735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:55 Heat of formation + Delta-G solvation = -16.881388 kcal Electronic energy + Delta-G solvation = -17868.940921 eV Core-core repulsion = 15067.561720 eV Total energy + Delta-G solvation = -2801.379201 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.23228 -37.72055 -34.91624 -34.41876 -32.73328 -31.61873 -29.69852 -27.08677 -25.48377 -24.40729 -23.09921 -21.39442 -20.29885 -19.46916 -18.23205 -16.94049 -16.15059 -15.43096 -14.77628 -14.66451 -14.40703 -14.28379 -13.68801 -13.52628 -13.30284 -12.89868 -12.70617 -12.41780 -12.30139 -12.16974 -11.46881 -11.06979 -10.97138 -10.80028 -10.59615 -10.33305 -10.22823 -9.94627 -9.82583 -9.55344 -9.10583 -8.80288 -8.32281 -6.82812 -5.65995 -2.95726 2.79492 3.39402 3.49739 3.54410 3.57440 3.94681 4.64700 4.74518 4.89666 4.95885 5.13309 5.26158 5.37225 5.42758 5.52631 5.67206 5.67966 5.77232 5.84963 5.88080 5.99319 6.14530 6.18777 6.26761 6.45625 6.48633 6.55973 6.67895 6.83709 6.95158 7.09770 7.78455 8.05115 8.51705 8.77479 9.62657 10.21247 10.55436 11.56437 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027630 B = 0.005913 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.158049 B = 4734.322399 C = 5594.103065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.757 5.757 3 C 0.701 3.299 4 O -0.578 6.578 5 N -0.628 5.628 6 C 0.113 3.887 7 C -0.133 4.133 8 C -0.111 4.111 9 C -0.108 4.108 10 H 0.073 0.927 11 C 0.161 3.839 12 N -0.733 5.733 13 C -0.241 4.241 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.929 5.929 17 Si 0.906 3.094 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.292 1.292 21 C 0.137 3.863 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.393 0.607 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.063 0.937 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 -20.342 -3.835 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.416 5.416 3 C 0.402 3.598 4 O -0.454 6.454 5 N -0.365 5.365 6 C -0.011 4.011 7 C -0.172 4.172 8 C -0.150 4.150 9 C -0.127 4.127 10 H 0.092 0.908 11 C 0.032 3.968 12 N -0.378 5.378 13 C -0.372 4.372 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.578 5.578 17 Si 0.737 3.263 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C 0.015 3.985 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.228 0.772 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.350 -19.408 -3.894 19.798 hybrid contribution 0.303 0.436 0.143 0.550 sum -0.047 -18.972 -3.751 19.339 Atomic orbital electron populations 1.21352 0.78573 1.01448 1.02379 1.45112 1.07535 1.07248 1.81661 1.15925 0.81658 0.84134 0.78052 1.90988 1.67315 1.30357 1.56755 1.47394 1.04064 1.07846 1.77237 1.21588 0.94899 0.85849 0.98733 1.21913 0.98462 0.98687 0.98094 1.21507 0.97583 0.93593 1.02279 1.21786 0.97160 0.95316 0.98487 0.90828 1.20631 0.92768 0.85637 0.97717 1.42426 1.06096 1.01502 1.87757 1.19256 0.91997 0.84196 1.41785 0.91179 1.24761 0.95409 0.97862 1.02942 1.69692 1.02707 1.28820 1.56554 0.86136 0.78121 0.84863 0.77178 1.20605 1.21890 1.21946 1.21698 0.94891 0.84841 0.97054 0.92450 0.91073 0.92436 0.77150 0.91178 0.91444 0.91540 0.91025 0.91563 0.91767 0.96123 0.96255 0.78057 0.93551 0.91870 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.09 10.71 59.84 0.64 1.73 16 2 N -0.76 -8.90 5.63 -72.08 -0.41 -9.30 16 3 C 0.70 11.71 8.30 -86.92 -0.72 10.99 16 4 O -0.58 -12.72 15.78 5.29 0.08 -12.64 16 5 N -0.63 -9.32 2.97 -178.23 -0.53 -9.85 16 6 C 0.11 1.13 6.43 -3.71 -0.02 1.11 16 7 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 8 C -0.11 -1.37 5.16 -26.69 -0.14 -1.51 16 9 C -0.11 -1.81 2.38 -90.28 -0.22 -2.02 16 10 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 11 C 0.16 3.30 5.65 -4.04 -0.02 3.28 16 12 N -0.73 -19.38 5.38 -59.91 -0.32 -19.70 16 13 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 14 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 15 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -29.54 13.06 55.49 0.72 -28.82 16 17 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 20 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 21 C 0.14 2.43 5.53 -3.49 -0.02 2.41 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.39 3.27 6.29 -40.82 -0.26 3.01 16 26 H 0.07 0.51 5.57 -51.93 -0.29 0.22 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.39 10.94 6.92 -40.82 -0.28 10.66 16 35 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 2.31 6.26 -51.93 -0.33 1.99 16 LS Contribution 298.30 15.07 4.50 4.50 Total: -1.00 -35.64 298.30 -7.66 -43.29 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.77 Total: 7.53 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.91 Total: 6.86 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -0.53 Total: -67.67 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.08 Total: -12.64 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.64 -7.66 -43.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260049735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.412 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds