Wall clock time and date at job start Mon Mar 30 2020 04:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34775 * 119.99792 * 2 1 4 4 O 1.21590 * 120.00210 * 354.92715 * 3 2 1 5 5 N 1.34776 * 119.99904 * 174.92617 * 3 2 1 6 6 C 1.46932 * 120.63433 * 5.03537 * 5 3 2 7 7 C 1.53191 * 108.77489 * 233.58761 * 6 5 3 8 8 C 1.53040 * 109.31020 * 305.35917 * 7 6 5 9 9 C 1.53039 * 109.53894 * 61.36784 * 8 7 6 10 10 H 1.08998 * 109.49565 * 58.58654 * 9 8 7 11 11 C 1.53002 * 109.49853 * 178.64786 * 9 8 7 12 12 N 1.46500 * 109.47176 * 185.00014 * 11 9 8 13 13 C 1.36934 * 119.99915 * 180.02562 * 12 11 9 14 14 H 1.08005 * 120.00266 * 359.97438 * 13 12 11 15 15 C 1.38813 * 120.00072 * 180.02562 * 13 12 11 16 16 N 1.31623 * 119.99863 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00158 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46980 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47592 * 119.99803 * 17 15 13 20 20 H 1.48504 * 109.46861 * 239.99702 * 17 15 13 21 21 C 1.46928 * 120.63387 * 184.75250 * 5 3 2 22 22 H 1.09001 * 109.47508 * 300.00000 * 1 2 3 23 23 H 1.09000 * 109.46914 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47720 * 59.99853 * 1 2 3 25 25 H 0.97003 * 120.00440 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.57919 * 353.36796 * 6 5 3 27 27 H 1.08994 * 109.58914 * 113.64872 * 6 5 3 28 28 H 1.09002 * 109.49979 * 65.31350 * 7 6 5 29 29 H 1.09001 * 109.49230 * 185.40991 * 7 6 5 30 30 H 1.08999 * 109.45906 * 181.39009 * 8 7 6 31 31 H 1.08999 * 109.46347 * 301.36092 * 8 7 6 32 32 H 1.09000 * 109.47020 * 305.00131 * 11 9 8 33 33 H 1.08999 * 109.47128 * 64.99777 * 11 9 8 34 34 H 0.96994 * 120.00042 * 0.02562 * 12 11 9 35 35 H 0.96997 * 120.00046 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.58901 * 246.20560 * 21 5 3 37 37 H 1.09000 * 109.58202 * 6.62816 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5344 2.2182 -0.0931 5 7 3.4826 1.1695 0.1032 6 6 4.2355 -0.0922 0.1057 7 6 5.1353 -0.1270 1.3450 8 6 6.0113 1.1276 1.3698 9 6 5.1227 2.3708 1.4528 10 1 4.5050 2.3172 2.3493 11 6 6.0002 3.6228 1.5115 12 7 5.1550 4.8026 1.7109 13 6 5.7232 6.0457 1.7948 14 1 6.7946 6.1563 1.7142 15 6 4.9224 7.1636 1.9843 16 7 3.6169 7.0288 2.0829 17 14 5.6975 8.8593 2.0979 18 1 7.1711 8.7405 1.9571 19 1 5.1640 9.7213 1.0127 20 1 5.3737 9.4643 3.4149 21 6 4.2231 2.4341 0.2092 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 1.9500 -0.8400 -0.0004 26 1 3.5410 -0.9319 0.1347 27 1 4.8469 -0.1547 -0.7944 28 1 4.5174 -0.1571 2.2425 29 1 5.7694 -1.0129 1.3094 30 1 6.6701 1.0934 2.2375 31 1 6.6106 1.1700 0.4603 32 1 6.7032 3.5352 2.3398 33 1 6.5512 3.7244 0.5765 34 1 4.1929 4.7033 1.7836 35 1 3.0572 7.8100 2.2150 36 1 4.8356 2.5746 -0.6814 37 1 3.5206 3.2618 0.3064 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260049735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:55 Heat of formation + Delta-G solvation = -44.112693 kcal Electronic energy + Delta-G solvation = -17870.121759 eV Core-core repulsion = 15067.561720 eV Total energy + Delta-G solvation = -2802.560039 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.45124 -39.00365 -36.60556 -35.70135 -34.27706 -33.06230 -31.42095 -28.21155 -27.07544 -25.57659 -24.85058 -22.69873 -21.66062 -20.65678 -19.40389 -19.01702 -17.35096 -16.71014 -16.61899 -15.99572 -15.70426 -15.38746 -15.18063 -15.12460 -14.61142 -14.12816 -14.08224 -13.81061 -13.61521 -13.06807 -13.00150 -12.86842 -12.66742 -12.14389 -12.03867 -11.93814 -11.82782 -11.59737 -11.30990 -11.15943 -10.96850 -10.27193 -9.46329 -9.00850 -7.94291 -5.24984 1.45431 1.47921 1.58057 1.66126 2.11525 2.55902 2.99829 3.38855 3.73175 3.88290 3.92356 4.11237 4.19496 4.32375 4.42903 4.47320 4.62188 4.64612 4.78454 4.84380 4.90297 4.93011 4.95469 5.05357 5.11680 5.24692 5.34913 5.47722 5.49715 5.51143 5.56686 5.96473 6.26412 6.99478 7.31569 7.55923 8.08578 8.30506 9.29692 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027630 B = 0.005913 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.158049 B = 4734.322399 C = 5594.103065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.736 5.736 3 C 0.689 3.311 4 O -0.644 6.644 5 N -0.626 5.626 6 C 0.105 3.895 7 C -0.126 4.126 8 C -0.106 4.106 9 C -0.094 4.094 10 H 0.049 0.951 11 C 0.157 3.843 12 N -0.749 5.749 13 C -0.245 4.245 14 H 0.081 0.919 15 C -0.081 4.081 16 N -0.974 5.974 17 Si 0.978 3.022 18 H -0.261 1.261 19 H -0.295 1.295 20 H -0.293 1.293 21 C 0.145 3.855 22 H 0.039 0.961 23 H 0.121 0.879 24 H 0.043 0.957 25 H 0.414 0.586 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.370 0.630 35 H 0.250 0.750 36 H 0.069 0.931 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 -23.143 -4.147 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.395 5.395 3 C 0.390 3.610 4 O -0.526 6.526 5 N -0.363 5.363 6 C -0.016 4.016 7 C -0.164 4.164 8 C -0.144 4.144 9 C -0.114 4.114 10 H 0.068 0.932 11 C 0.031 3.969 12 N -0.392 5.392 13 C -0.377 4.377 14 H 0.099 0.901 15 C -0.273 4.273 16 N -0.625 5.625 17 Si 0.807 3.193 18 H -0.185 1.185 19 H -0.222 1.222 20 H -0.220 1.220 21 C 0.021 3.979 22 H 0.058 0.942 23 H 0.140 0.860 24 H 0.062 0.938 25 H 0.253 0.747 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.131 0.869 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.201 0.799 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.588 -22.324 -4.209 22.773 hybrid contribution -0.255 1.206 0.220 1.252 sum 1.332 -21.118 -3.989 21.533 Atomic orbital electron populations 1.21538 0.77484 1.04218 1.00877 1.44947 1.08154 1.06464 1.79921 1.16312 0.82232 0.84541 0.77891 1.90944 1.68839 1.33112 1.59695 1.47385 1.03742 1.08618 1.76521 1.22014 0.95581 0.84140 0.99868 1.21906 0.98326 0.98716 0.97449 1.21504 0.97269 0.92127 1.03488 1.21632 0.96878 0.96044 0.96830 0.93218 1.20862 0.92847 0.85321 0.97918 1.42702 1.05965 1.02753 1.87751 1.19745 0.92547 0.85377 1.40019 0.90106 1.25689 0.95869 1.02131 1.03630 1.69889 1.04407 1.29580 1.58642 0.84999 0.78182 0.79496 0.76626 1.18463 1.22187 1.22005 1.21336 0.93888 0.84932 0.97731 0.94228 0.86017 0.93836 0.74692 0.87850 0.89452 0.92406 0.86905 0.90614 0.90283 0.95398 0.95456 0.79882 0.94144 0.91314 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.97 10.71 127.77 1.37 3.34 16 2 N -0.74 -16.08 5.63 -500.21 -2.81 -18.89 16 3 C 0.69 23.30 8.30 179.06 1.49 24.79 16 4 O -0.64 -30.23 15.78 -4.00 -0.06 -30.29 16 5 N -0.63 -18.20 2.97 -836.07 -2.48 -20.68 16 6 C 0.11 1.71 6.43 86.36 0.56 2.27 16 7 C -0.13 -1.95 6.08 30.67 0.19 -1.76 16 8 C -0.11 -2.30 5.16 30.62 0.16 -2.14 16 9 C -0.09 -3.15 2.38 -10.57 -0.03 -3.18 16 10 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 11 C 0.16 6.48 5.65 86.38 0.49 6.97 16 12 N -0.75 -40.98 5.38 -343.45 -1.85 -42.83 16 13 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 14 H 0.08 4.49 7.83 -2.91 -0.02 4.46 16 15 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 16 N -0.97 -64.45 13.06 21.65 0.28 -64.17 16 17 Si 0.98 48.41 29.55 68.60 2.03 50.44 16 18 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 20 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 21 C 0.15 5.29 5.53 86.51 0.48 5.77 16 22 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.41 5.36 6.29 -92.71 -0.58 4.78 16 26 H 0.10 1.00 5.57 -2.39 -0.01 0.98 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.11 0.96 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.37 22.32 6.92 -92.71 -0.64 21.67 16 35 H 0.25 15.95 8.31 -92.71 -0.77 15.18 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.05 2.26 6.26 -2.39 -0.01 2.24 16 Total: -1.00 -83.42 298.30 0.95 -82.47 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -0.16 Total: 26.02 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 6.00 Total: 17.94 kcal Atomic # 7 Polarization: -139.71 SS G_CDS: -6.86 Total: -146.57 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.06 Total: -30.29 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Total: -83.42 0.95 -82.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260049735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.354 kcal (2) G-P(sol) polarization free energy of solvation -83.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds