Wall clock time and date at job start Mon Mar 30 2020 04:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00121 * 2 1 4 4 C 1.34777 * 119.99838 * 179.97438 * 2 1 3 5 5 O 1.21582 * 120.00042 * 6.75863 * 4 2 1 6 6 N 1.34774 * 119.99866 * 186.75305 * 4 2 1 7 7 C 1.47426 * 125.64940 * 183.97549 * 6 4 2 8 8 C 1.54902 * 104.83347 * 155.90538 * 7 6 4 9 9 C 1.55156 * 101.58196 * 37.01314 * 8 7 6 10 10 H 1.09003 * 110.71923 * 83.03675 * 9 8 7 11 11 N 1.46502 * 110.72529 * 206.13282 * 9 8 7 12 12 C 1.46502 * 119.99834 * 56.15425 * 11 9 8 13 13 C 1.36935 * 120.00294 * 236.16218 * 11 9 8 14 14 H 1.08003 * 119.99350 * 337.77222 * 13 11 9 15 15 C 1.38807 * 120.00304 * 157.49883 * 13 11 9 16 16 N 1.31621 * 119.99814 * 341.46166 * 15 13 11 17 17 Si 1.86803 * 120.00131 * 161.45951 * 15 13 11 18 18 H 1.48507 * 109.46843 * 359.97438 * 17 15 13 19 19 H 1.48486 * 109.47066 * 120.00066 * 17 15 13 20 20 H 1.48499 * 109.46938 * 240.00291 * 17 15 13 21 21 C 1.47319 * 125.61701 * 4.20164 * 6 4 2 22 22 H 1.08999 * 109.47415 * 270.00551 * 1 2 3 23 23 H 1.09005 * 109.46922 * 29.99657 * 1 2 3 24 24 H 1.08998 * 109.47392 * 149.99600 * 1 2 3 25 25 H 1.08998 * 109.47064 * 234.92691 * 3 2 1 26 26 H 1.08998 * 109.47141 * 354.92959 * 3 2 1 27 27 H 1.09003 * 109.47427 * 114.93312 * 3 2 1 28 28 H 1.09012 * 110.36301 * 37.07097 * 7 6 4 29 29 H 1.08995 * 110.46156 * 274.80040 * 7 6 4 30 30 H 1.09000 * 111.00897 * 278.93789 * 8 7 6 31 31 H 1.09002 * 111.00423 * 155.08662 * 8 7 6 32 32 H 1.09002 * 109.47086 * 264.43351 * 12 11 9 33 33 H 1.09000 * 109.46963 * 24.42972 * 12 11 9 34 34 H 1.09002 * 109.46927 * 144.42931 * 12 11 9 35 35 H 0.96997 * 119.99621 * 179.97438 * 16 15 13 36 36 H 1.09004 * 110.06344 * 61.68419 * 21 6 4 37 37 H 1.09000 * 109.85211 * 300.42026 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5372 -2.2165 -0.1229 6 7 3.4795 -1.1712 0.1378 7 6 4.3463 -2.3620 0.0731 8 6 5.7385 -1.8175 -0.3331 9 6 5.7842 -0.4723 0.4387 10 1 6.0984 -0.6302 1.4705 11 7 6.6728 0.4802 -0.2317 12 6 6.4455 0.8303 -1.6360 13 6 7.7158 1.0430 0.4541 14 1 7.6915 1.0870 1.5330 15 6 8.8068 1.5520 -0.2369 16 7 9.0264 1.1856 -1.4819 17 14 9.9632 2.7568 0.6000 18 1 9.4990 3.0052 1.9887 19 1 11.3342 2.1873 0.6302 20 1 9.9752 4.0363 -0.1536 21 6 4.3205 0.0135 0.3820 22 1 -0.3634 0.0001 1.0276 23 1 -0.3633 0.8901 -0.5138 24 1 -0.3634 -0.8899 -0.5139 25 1 2.8905 1.2881 -0.8411 26 1 1.4927 2.0952 -0.0908 27 1 2.7544 1.3668 0.9319 28 1 3.9774 -3.0593 -0.6793 29 1 4.3986 -2.8486 1.0470 30 1 5.7948 -1.6526 -1.4091 31 1 6.5320 -2.4863 0.0001 32 1 7.0748 0.2078 -2.2721 33 1 5.3980 0.6640 -1.8870 34 1 6.6948 1.8797 -1.7937 35 1 9.7885 1.5416 -1.9649 36 1 4.0469 0.4773 1.3297 37 1 4.1984 0.7282 -0.4319 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260053579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:07 Heat of formation + Delta-G solvation = 10.583682 kcal Electronic energy + Delta-G solvation = -18346.625172 eV Core-core repulsion = 15546.436946 eV Total energy + Delta-G solvation = -2800.188226 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55201 -39.09001 -36.64128 -36.46535 -33.35718 -31.61917 -29.85032 -28.35636 -27.99240 -27.16102 -24.74434 -23.22038 -21.06863 -20.71624 -18.90390 -18.11100 -17.71938 -17.30131 -16.77858 -15.95322 -15.55182 -15.21726 -14.71898 -14.64573 -14.40848 -14.32900 -14.21645 -13.45590 -13.29378 -12.99023 -12.91177 -12.89097 -12.59621 -12.52889 -12.34361 -12.03710 -11.87808 -11.76443 -11.55272 -11.15700 -10.59324 -10.05528 -9.18861 -8.77840 -7.81740 -5.28280 1.49897 1.52845 1.59219 1.62576 2.02511 2.52366 2.79547 3.30858 3.59401 3.79548 3.94979 4.18390 4.24668 4.29846 4.41545 4.45082 4.55140 4.60107 4.75359 4.79767 4.87632 4.92623 4.97227 5.02762 5.11928 5.22614 5.29780 5.39394 5.62043 5.68615 5.72198 5.92708 6.33728 6.85353 7.15776 7.44684 7.86924 8.31697 9.21738 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039045 B = 0.006083 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.945775 B = 4601.749559 C = 4946.368226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.638 5.638 3 C 0.067 3.933 4 C 0.714 3.286 5 O -0.635 6.635 6 N -0.633 5.633 7 C 0.134 3.866 8 C -0.141 4.141 9 C 0.162 3.838 10 H 0.081 0.919 11 N -0.597 5.597 12 C 0.176 3.824 13 C -0.263 4.263 14 H 0.077 0.923 15 C -0.048 4.048 16 N -0.934 5.934 17 Si 0.964 3.036 18 H -0.264 1.264 19 H -0.297 1.297 20 H -0.293 1.293 21 C 0.084 3.916 22 H 0.058 0.942 23 H 0.099 0.901 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.004 0.996 33 H 0.030 0.970 34 H 0.016 0.984 35 H 0.247 0.753 36 H 0.078 0.922 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.841 0.753 3.687 13.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.376 5.376 3 C -0.075 4.075 4 C 0.417 3.583 5 O -0.518 6.518 6 N -0.370 5.370 7 C 0.010 3.990 8 C -0.181 4.181 9 C 0.053 3.947 10 H 0.099 0.901 11 N -0.318 5.318 12 C 0.031 3.969 13 C -0.393 4.393 14 H 0.094 0.906 15 C -0.244 4.244 16 N -0.581 5.581 17 Si 0.792 3.208 18 H -0.188 1.188 19 H -0.224 1.224 20 H -0.220 1.220 21 C -0.040 4.040 22 H 0.077 0.923 23 H 0.118 0.882 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.122 0.878 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.022 0.978 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.133 0.294 3.514 13.598 hybrid contribution 1.053 0.509 -0.031 1.170 sum -12.080 0.803 3.483 12.597 Atomic orbital electron populations 1.21683 0.76457 1.03625 1.02236 1.46971 1.07819 1.04749 1.78031 1.22555 0.97932 0.84808 1.02181 1.15684 0.80566 0.84193 0.77828 1.90835 1.68068 1.32222 1.60638 1.47635 1.03933 1.10510 1.74942 1.22024 0.88438 0.87049 1.01470 1.23219 0.95417 0.98746 1.00714 1.21531 0.88638 0.88150 0.96359 0.90131 1.44044 1.30451 1.48137 1.09211 1.20463 0.94521 0.97363 0.84511 1.19579 0.96099 1.32085 0.91548 0.90569 1.25686 0.98654 1.02774 0.97255 1.70258 1.30035 1.45444 1.12326 0.85264 0.78297 0.78720 0.78484 1.18817 1.22429 1.22019 1.23309 0.91141 0.87991 1.01543 0.92293 0.88230 0.92336 0.92310 0.87804 0.91269 0.91535 0.90665 0.92426 0.89972 0.97766 0.95162 0.96545 0.94333 0.90373 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.04 10.48 127.77 1.34 3.38 16 2 N -0.64 -16.66 3.27 -890.20 -2.91 -19.58 16 3 C 0.07 1.39 8.80 127.77 1.12 2.52 16 4 C 0.71 24.15 8.33 179.05 1.49 25.64 16 5 O -0.64 -25.61 16.18 -3.97 -0.06 -25.68 16 6 N -0.63 -20.40 3.33 -829.00 -2.76 -23.16 16 7 C 0.13 4.16 6.89 86.85 0.60 4.75 16 8 C -0.14 -4.81 6.64 31.98 0.21 -4.60 16 9 C 0.16 5.94 3.43 46.18 0.16 6.10 16 10 H 0.08 2.93 7.93 -2.39 -0.02 2.91 16 11 N -0.60 -27.36 2.93 -696.14 -2.04 -29.40 16 12 C 0.18 8.13 7.59 127.77 0.97 9.10 16 13 C -0.26 -13.42 9.57 84.03 0.80 -12.62 16 14 H 0.08 3.74 7.88 -2.91 -0.02 3.71 16 15 C -0.05 -2.55 4.99 84.86 0.42 -2.13 16 16 N -0.93 -53.34 11.01 21.65 0.24 -53.10 16 17 Si 0.96 42.98 29.59 68.60 2.03 45.01 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 20 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 21 C 0.08 2.60 4.59 86.67 0.40 3.00 16 22 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.10 1.31 7.88 -2.38 -0.02 1.29 16 24 H 0.06 1.38 7.34 -2.39 -0.02 1.37 16 25 H 0.06 1.38 5.87 -2.39 -0.01 1.37 16 26 H 0.10 1.47 7.77 -2.39 -0.02 1.45 16 27 H 0.07 1.45 5.56 -2.39 -0.01 1.44 16 28 H 0.07 2.12 8.08 -2.38 -0.02 2.10 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.06 2.17 7.19 -2.39 -0.02 2.15 16 31 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.00 0.21 7.32 -2.39 -0.02 0.19 16 33 H 0.03 1.20 6.46 -2.39 -0.02 1.18 16 34 H 0.02 0.80 7.48 -2.39 -0.02 0.78 16 35 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 36 H 0.08 2.20 6.44 -2.39 -0.02 2.18 16 37 H 0.08 2.59 3.42 -2.39 -0.01 2.58 16 Total: -1.00 -65.78 288.29 3.06 -62.71 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.06 Total: 8.04 kcal Atomic # 6 Polarization: 27.64 SS G_CDS: 7.52 Total: 35.15 kcal Atomic # 7 Polarization: -117.77 SS G_CDS: -7.48 Total: -125.24 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.06 Total: -25.68 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -65.78 3.06 -62.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260053579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.296 kcal (2) G-P(sol) polarization free energy of solvation -65.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds