Wall clock time and date at job start Mon Mar 30 2020 04:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99660 * 2 1 4 4 C 1.34774 * 120.00171 * 179.97438 * 2 1 3 5 5 O 1.21593 * 119.99910 * 358.79239 * 4 2 1 6 6 N 1.34773 * 120.00074 * 178.79141 * 4 2 1 7 7 C 1.47420 * 125.65136 * 354.07045 * 6 4 2 8 8 C 1.54906 * 104.83693 * 204.09346 * 7 6 4 9 9 C 1.55156 * 101.58179 * 322.99324 * 8 7 6 10 10 H 1.08995 * 110.71808 * 277.13388 * 9 8 7 11 11 N 1.46504 * 110.71834 * 153.86474 * 9 8 7 12 12 C 1.46505 * 119.99854 * 306.47533 * 11 9 8 13 13 C 1.36934 * 120.00091 * 126.47786 * 11 9 8 14 14 H 1.07999 * 119.99806 * 23.16445 * 13 11 9 15 15 C 1.38811 * 119.99944 * 203.16320 * 13 11 9 16 16 N 1.31617 * 120.00308 * 16.29430 * 15 13 11 17 17 Si 1.86801 * 119.99980 * 196.29299 * 15 13 11 18 18 H 1.48507 * 109.46882 * 89.99867 * 17 15 13 19 19 H 1.48492 * 109.47570 * 210.00170 * 17 15 13 20 20 H 1.48501 * 109.47137 * 330.00142 * 17 15 13 21 21 C 1.47026 * 125.65085 * 174.03594 * 6 4 2 22 22 H 1.08994 * 109.47037 * 270.00141 * 1 2 3 23 23 H 1.08999 * 109.47121 * 30.00237 * 1 2 3 24 24 H 1.09007 * 109.46861 * 150.00085 * 1 2 3 25 25 H 1.09001 * 109.46927 * 263.42197 * 3 2 1 26 26 H 1.08992 * 109.47304 * 23.42801 * 3 2 1 27 27 H 1.09000 * 109.46780 * 143.43459 * 3 2 1 28 28 H 1.09001 * 110.36625 * 322.94120 * 7 6 4 29 29 H 1.09001 * 110.36351 * 85.25369 * 7 6 4 30 30 H 1.08999 * 111.00387 * 81.06744 * 8 7 6 31 31 H 1.09003 * 111.00457 * 204.91547 * 8 7 6 32 32 H 1.09001 * 109.46857 * 95.13275 * 12 11 9 33 33 H 1.08996 * 109.46674 * 215.13235 * 12 11 9 34 34 H 1.09000 * 109.47128 * 335.13395 * 12 11 9 35 35 H 0.96990 * 119.99975 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.87877 * 298.39595 * 21 6 4 37 37 H 1.09000 * 109.88429 * 59.55245 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5312 -2.2201 0.0232 6 7 3.4864 -1.1673 -0.0241 7 6 4.3431 0.0227 -0.1766 8 6 5.6747 -0.5185 -0.7541 9 6 5.8082 -1.8742 -0.0113 10 1 6.2416 -1.7305 0.9784 11 7 6.6068 -2.8188 -0.7963 12 6 6.2448 -3.1055 -2.1867 13 6 7.6915 -3.4339 -0.2304 14 1 7.7558 -3.5352 0.8429 15 6 8.7084 -3.9272 -1.0363 16 7 8.8031 -3.5365 -2.2896 17 14 9.9425 -5.1456 -0.3421 18 1 9.4437 -6.5287 -0.5510 19 1 11.2455 -4.9794 -1.0346 20 1 10.1192 -4.8974 1.1113 21 6 4.3456 -2.3542 0.0974 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8901 -0.5139 25 1 2.4810 1.5246 -1.0209 26 1 1.5625 2.0548 0.4086 27 1 3.0939 1.1707 0.6122 28 1 3.8889 0.7308 -0.8697 29 1 4.5133 0.4942 0.7913 30 1 5.6010 -0.6688 -1.8312 31 1 6.5047 0.1444 -0.5096 32 1 6.8254 -2.4667 -2.8523 33 1 6.4577 -4.1510 -2.4093 34 1 5.1822 -2.9118 -2.3328 35 1 9.5134 -3.8815 -2.8528 36 1 4.1831 -2.8320 1.0636 37 1 4.1248 -3.0556 -0.7071 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260053583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:09 Heat of formation + Delta-G solvation = 37.423284 kcal Electronic energy + Delta-G solvation = -18190.445151 eV Core-core repulsion = 15391.420777 eV Total energy + Delta-G solvation = -2799.024374 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.29878 -37.61525 -35.53342 -34.72631 -31.59724 -29.82823 -29.01602 -27.05850 -26.12401 -25.91494 -22.96872 -21.99800 -19.76388 -19.16939 -17.06728 -16.84853 -16.31632 -15.99060 -15.14408 -14.46178 -14.21668 -13.68954 -13.53370 -13.38699 -12.96946 -12.70997 -12.48567 -12.28572 -12.18891 -12.04223 -11.64364 -11.01089 -10.93080 -10.62961 -10.52436 -10.46068 -10.21118 -9.86251 -9.85810 -9.78696 -8.81505 -8.56777 -8.04528 -6.79952 -5.76045 -3.22516 2.73387 3.37079 3.38592 3.45498 3.46046 3.92473 4.48206 4.88160 4.95967 5.13311 5.24180 5.28861 5.36985 5.44687 5.54514 5.55521 5.59427 5.73538 5.79839 5.94277 6.03987 6.37722 6.38895 6.43391 6.60880 6.65823 6.81101 6.90915 7.14386 7.33628 7.69292 7.79032 8.13094 8.35908 8.76300 9.19074 9.82329 10.31619 11.28715 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.051914 B = 0.005396 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.220813 B = 5187.874149 C = 5350.154766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.641 5.641 3 C 0.062 3.938 4 C 0.720 3.280 5 O -0.592 6.592 6 N -0.629 5.629 7 C 0.088 3.912 8 C -0.153 4.153 9 C 0.173 3.827 10 H 0.079 0.921 11 N -0.585 5.585 12 C 0.158 3.842 13 C -0.262 4.262 14 H 0.070 0.930 15 C 0.006 3.994 16 N -0.902 5.902 17 Si 0.905 3.095 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.106 3.894 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.039 0.961 34 H 0.004 0.996 35 H 0.253 0.747 36 H 0.057 0.943 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.118 11.261 3.580 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.380 5.380 3 C -0.081 4.081 4 C 0.423 3.577 5 O -0.471 6.471 6 N -0.367 5.367 7 C -0.034 4.034 8 C -0.193 4.193 9 C 0.062 3.938 10 H 0.097 0.903 11 N -0.305 5.305 12 C 0.014 3.986 13 C -0.391 4.391 14 H 0.088 0.912 15 C -0.193 4.193 16 N -0.546 5.546 17 Si 0.735 3.265 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.204 1.204 21 C -0.019 4.019 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.022 0.978 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.381 10.592 3.444 15.925 hybrid contribution 0.698 -0.474 0.215 0.871 sum -10.683 10.119 3.659 15.163 Atomic orbital electron populations 1.21446 0.78149 1.02684 1.01317 1.46822 1.06689 1.04945 1.79551 1.22599 0.98400 0.85469 1.01610 1.15476 0.80629 0.83603 0.77998 1.90896 1.67221 1.30224 1.58738 1.47550 1.02936 1.10127 1.76056 1.22982 0.91932 0.88779 0.99749 1.23418 0.94852 0.99428 1.01605 1.21311 0.88692 0.88229 0.95536 0.90323 1.43861 1.29734 1.46873 1.10057 1.20780 0.92989 0.99926 0.84925 1.19218 0.96555 1.31431 0.91924 0.91229 1.24994 0.97248 1.00681 0.96376 1.70081 1.33596 1.44150 1.06813 0.86257 0.80427 0.81535 0.78315 1.21429 1.21793 1.20415 1.22668 0.91186 0.86726 1.01345 0.93312 0.91676 0.90660 0.92694 0.91625 0.89317 0.90188 0.91810 0.90622 0.90414 0.94815 0.94220 0.97793 0.93689 0.92460 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.15 10.40 59.85 0.62 1.78 16 2 N -0.64 -8.54 3.27 -195.34 -0.64 -9.18 16 3 C 0.06 0.58 8.76 59.85 0.52 1.10 16 4 C 0.72 12.75 8.34 -86.92 -0.73 12.02 16 5 O -0.59 -12.76 16.27 5.28 0.09 -12.67 16 6 N -0.63 -10.67 3.33 -176.24 -0.59 -11.26 16 7 C 0.09 1.19 4.89 -2.53 -0.01 1.18 16 8 C -0.15 -2.55 6.62 -24.59 -0.16 -2.71 16 9 C 0.17 3.43 3.43 -66.10 -0.23 3.21 16 10 H 0.08 1.54 7.95 -51.93 -0.41 1.12 16 11 N -0.58 -14.35 2.93 -171.39 -0.50 -14.85 16 12 C 0.16 3.88 7.48 59.85 0.45 4.33 16 13 C -0.26 -7.06 9.58 -15.06 -0.14 -7.21 16 14 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 15 C 0.01 0.17 5.03 -17.43 -0.09 0.08 16 16 N -0.90 -25.95 10.91 55.49 0.61 -25.34 16 17 Si 0.90 21.63 29.58 -169.99 -5.03 16.61 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.11 2.04 6.39 -3.07 -0.02 2.02 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 24 H 0.07 0.93 7.44 -51.92 -0.39 0.55 16 25 H 0.05 0.48 6.87 -51.93 -0.36 0.12 16 26 H 0.06 0.46 8.02 -51.93 -0.42 0.04 16 27 H 0.09 0.83 4.36 -51.93 -0.23 0.61 16 28 H 0.08 0.91 4.93 -51.93 -0.26 0.66 16 29 H 0.06 0.74 6.96 -51.93 -0.36 0.38 16 30 H 0.08 1.39 7.07 -51.93 -0.37 1.02 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.03 0.88 7.33 -51.93 -0.38 0.50 16 33 H 0.04 1.05 7.44 -51.93 -0.39 0.66 16 34 H 0.00 0.08 6.59 -51.93 -0.34 -0.26 16 35 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.52 6.47 -51.93 -0.34 1.18 16 LS Contribution 288.66 15.07 4.35 4.35 Total: -1.00 -32.47 288.66 -6.96 -39.43 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -5.46 Total: -2.88 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 0.22 Total: 15.80 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -1.12 Total: -60.64 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.47 -6.96 -39.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260053583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.855 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds