Wall clock time and date at job start Mon Mar 30 2020 04:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99660 * 2 1 4 4 C 1.34774 * 120.00171 * 179.97438 * 2 1 3 5 5 O 1.21593 * 119.99910 * 358.79239 * 4 2 1 6 6 N 1.34773 * 120.00074 * 178.79141 * 4 2 1 7 7 C 1.47420 * 125.65136 * 354.07045 * 6 4 2 8 8 C 1.54906 * 104.83693 * 204.09346 * 7 6 4 9 9 C 1.55156 * 101.58179 * 322.99324 * 8 7 6 10 10 H 1.08995 * 110.71808 * 277.13388 * 9 8 7 11 11 N 1.46504 * 110.71834 * 153.86474 * 9 8 7 12 12 C 1.46505 * 119.99854 * 306.47533 * 11 9 8 13 13 C 1.36934 * 120.00091 * 126.47786 * 11 9 8 14 14 H 1.07999 * 119.99806 * 23.16445 * 13 11 9 15 15 C 1.38811 * 119.99944 * 203.16320 * 13 11 9 16 16 N 1.31617 * 120.00308 * 16.29430 * 15 13 11 17 17 Si 1.86801 * 119.99980 * 196.29299 * 15 13 11 18 18 H 1.48507 * 109.46882 * 89.99867 * 17 15 13 19 19 H 1.48492 * 109.47570 * 210.00170 * 17 15 13 20 20 H 1.48501 * 109.47137 * 330.00142 * 17 15 13 21 21 C 1.47026 * 125.65085 * 174.03594 * 6 4 2 22 22 H 1.08994 * 109.47037 * 270.00141 * 1 2 3 23 23 H 1.08999 * 109.47121 * 30.00237 * 1 2 3 24 24 H 1.09007 * 109.46861 * 150.00085 * 1 2 3 25 25 H 1.09001 * 109.46927 * 263.42197 * 3 2 1 26 26 H 1.08992 * 109.47304 * 23.42801 * 3 2 1 27 27 H 1.09000 * 109.46780 * 143.43459 * 3 2 1 28 28 H 1.09001 * 110.36625 * 322.94120 * 7 6 4 29 29 H 1.09001 * 110.36351 * 85.25369 * 7 6 4 30 30 H 1.08999 * 111.00387 * 81.06744 * 8 7 6 31 31 H 1.09003 * 111.00457 * 204.91547 * 8 7 6 32 32 H 1.09001 * 109.46857 * 95.13275 * 12 11 9 33 33 H 1.08996 * 109.46674 * 215.13235 * 12 11 9 34 34 H 1.09000 * 109.47128 * 335.13395 * 12 11 9 35 35 H 0.96990 * 119.99975 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.87877 * 298.39595 * 21 6 4 37 37 H 1.09000 * 109.88429 * 59.55245 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5312 -2.2201 0.0232 6 7 3.4864 -1.1673 -0.0241 7 6 4.3431 0.0227 -0.1766 8 6 5.6747 -0.5185 -0.7541 9 6 5.8082 -1.8742 -0.0113 10 1 6.2416 -1.7305 0.9784 11 7 6.6068 -2.8188 -0.7963 12 6 6.2448 -3.1055 -2.1867 13 6 7.6915 -3.4339 -0.2304 14 1 7.7558 -3.5352 0.8429 15 6 8.7084 -3.9272 -1.0363 16 7 8.8031 -3.5365 -2.2896 17 14 9.9425 -5.1456 -0.3421 18 1 9.4437 -6.5287 -0.5510 19 1 11.2455 -4.9794 -1.0346 20 1 10.1192 -4.8974 1.1113 21 6 4.3456 -2.3542 0.0974 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8901 -0.5139 25 1 2.4810 1.5246 -1.0209 26 1 1.5625 2.0548 0.4086 27 1 3.0939 1.1707 0.6122 28 1 3.8889 0.7308 -0.8697 29 1 4.5133 0.4942 0.7913 30 1 5.6010 -0.6688 -1.8312 31 1 6.5047 0.1444 -0.5096 32 1 6.8254 -2.4667 -2.8523 33 1 6.4577 -4.1510 -2.4093 34 1 5.1822 -2.9118 -2.3328 35 1 9.5134 -3.8815 -2.8528 36 1 4.1831 -2.8320 1.0636 37 1 4.1248 -3.0556 -0.7071 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260053583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:09 Heat of formation + Delta-G solvation = 15.397768 kcal Electronic energy + Delta-G solvation = -18191.400249 eV Core-core repulsion = 15391.420777 eV Total energy + Delta-G solvation = -2799.979472 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.58333 -39.10733 -36.83534 -36.36243 -33.42049 -31.34301 -30.25326 -28.25041 -28.02330 -27.17566 -24.74198 -23.27351 -21.12095 -20.70661 -18.93355 -18.07526 -17.75155 -17.21366 -16.83145 -15.96709 -15.58478 -15.14257 -14.85983 -14.75430 -14.41920 -14.21909 -13.89560 -13.61850 -13.40545 -13.07439 -12.96049 -12.82277 -12.77958 -12.44774 -12.24798 -12.07499 -12.01108 -11.67597 -11.41513 -11.13431 -10.63863 -10.06038 -9.21393 -8.80922 -7.84201 -5.32545 1.47602 1.50573 1.55450 1.58892 2.04884 2.50991 2.84111 3.28669 3.57130 3.80963 3.92105 4.22663 4.26808 4.34824 4.41426 4.44727 4.52192 4.62272 4.73464 4.80781 4.92591 4.92982 4.94811 5.00300 5.11152 5.24911 5.30104 5.40778 5.59137 5.63647 5.66697 5.93338 6.31590 6.90133 7.12507 7.45587 7.83328 8.29073 9.19427 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.051914 B = 0.005396 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.220813 B = 5187.874149 C = 5350.154766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.636 5.636 3 C 0.053 3.947 4 C 0.709 3.291 5 O -0.643 6.643 6 N -0.632 5.632 7 C 0.097 3.903 8 C -0.144 4.144 9 C 0.167 3.833 10 H 0.085 0.915 11 N -0.601 5.601 12 C 0.180 3.820 13 C -0.269 4.269 14 H 0.074 0.926 15 C -0.047 4.047 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.291 1.291 19 H -0.294 1.294 20 H -0.265 1.265 21 C 0.118 3.882 22 H 0.058 0.942 23 H 0.103 0.897 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.014 0.986 33 H 0.009 0.991 34 H 0.020 0.980 35 H 0.249 0.751 36 H 0.051 0.949 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.742 13.652 4.752 18.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.373 5.373 3 C -0.088 4.088 4 C 0.412 3.588 5 O -0.525 6.525 6 N -0.369 5.369 7 C -0.024 4.024 8 C -0.184 4.184 9 C 0.058 3.942 10 H 0.103 0.897 11 N -0.322 5.322 12 C 0.035 3.965 13 C -0.399 4.399 14 H 0.092 0.908 15 C -0.242 4.242 16 N -0.579 5.579 17 Si 0.795 3.205 18 H -0.218 1.218 19 H -0.221 1.221 20 H -0.190 1.190 21 C -0.008 4.008 22 H 0.076 0.924 23 H 0.122 0.878 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.117 0.883 27 H 0.110 0.890 28 H 0.128 0.872 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.032 0.968 33 H 0.028 0.972 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.033 13.068 4.646 18.362 hybrid contribution 0.791 -1.158 -0.118 1.407 sum -11.242 11.910 4.528 16.992 Atomic orbital electron populations 1.21641 0.76739 1.03382 1.02190 1.46977 1.07682 1.04821 1.77867 1.22852 0.99018 0.84178 1.02743 1.15788 0.80650 0.84348 0.77978 1.90855 1.68220 1.32532 1.60936 1.47501 1.03052 1.10283 1.76111 1.23237 0.89370 0.87759 1.02023 1.23281 0.97459 0.97602 1.00087 1.21481 0.88010 0.89062 0.95641 0.89704 1.44018 1.29794 1.48303 1.10103 1.20427 0.93442 0.97495 0.85162 1.19559 0.96847 1.31238 0.92268 0.90799 1.25726 0.99289 1.02442 0.96779 1.70222 1.34338 1.45418 1.07961 0.85275 0.77978 0.78976 0.78258 1.21825 1.22069 1.18997 1.22273 0.91379 0.87356 0.99775 0.92370 0.87832 0.93072 0.91449 0.88289 0.89019 0.87188 0.88571 0.92530 0.89076 0.96799 0.97217 0.96121 0.94211 0.93097 0.94306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.95 10.40 127.77 1.33 3.28 16 2 N -0.64 -15.09 3.27 -890.19 -2.91 -18.00 16 3 C 0.05 0.74 8.76 127.77 1.12 1.86 16 4 C 0.71 24.28 8.34 179.06 1.49 25.78 16 5 O -0.64 -28.06 16.27 -4.01 -0.07 -28.12 16 6 N -0.63 -20.48 3.33 -829.77 -2.76 -23.24 16 7 C 0.10 2.29 4.89 86.85 0.42 2.71 16 8 C -0.14 -4.54 6.62 31.98 0.21 -4.33 16 9 C 0.17 6.52 3.43 46.18 0.16 6.68 16 10 H 0.08 3.21 7.95 -2.39 -0.02 3.19 16 11 N -0.60 -29.83 2.93 -696.16 -2.04 -31.86 16 12 C 0.18 9.09 7.48 127.77 0.96 10.05 16 13 C -0.27 -14.59 9.58 84.03 0.81 -13.79 16 14 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 15 C -0.05 -2.58 5.03 84.86 0.43 -2.16 16 16 N -0.93 -54.82 10.91 21.65 0.24 -54.59 16 17 Si 0.97 44.81 29.58 68.60 2.03 46.84 16 18 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 C 0.12 4.57 6.39 86.73 0.55 5.13 16 22 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.10 1.16 8.07 -2.39 -0.02 1.14 16 24 H 0.05 1.23 7.44 -2.38 -0.02 1.21 16 25 H 0.07 0.82 6.87 -2.39 -0.02 0.81 16 26 H 0.10 0.80 8.02 -2.39 -0.02 0.78 16 27 H 0.09 1.24 4.36 -2.39 -0.01 1.23 16 28 H 0.11 2.01 4.93 -2.39 -0.01 2.00 16 29 H 0.10 1.74 6.96 -2.39 -0.02 1.72 16 30 H 0.06 2.01 7.07 -2.39 -0.02 1.99 16 31 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.01 0.75 7.33 -2.39 -0.02 0.73 16 33 H 0.01 0.51 7.44 -2.39 -0.02 0.49 16 34 H 0.02 0.94 6.59 -2.39 -0.02 0.93 16 35 H 0.25 14.21 8.31 -92.72 -0.77 13.44 16 36 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.04 1.73 6.47 -2.39 -0.02 1.72 16 Total: -1.00 -72.70 288.66 3.02 -69.68 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.06 Total: 4.08 kcal Atomic # 6 Polarization: 27.73 SS G_CDS: 7.48 Total: 35.20 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -7.47 Total: -127.69 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.07 Total: -28.12 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -72.70 3.02 -69.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260053583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.078 kcal (2) G-P(sol) polarization free energy of solvation -72.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds