Wall clock time and date at job start Mon Mar 30 2020 04:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 120.00261 * 2 1 4 4 O 1.21586 * 120.00018 * 0.02562 * 3 2 1 5 5 N 1.34781 * 120.00045 * 180.02562 * 3 2 1 6 6 C 1.47020 * 125.64747 * 359.95146 * 5 3 2 7 7 C 1.54323 * 107.27160 * 181.09702 * 6 5 3 8 8 C 1.55165 * 102.93994 * 22.19697 * 7 6 5 9 9 H 1.09000 * 111.03264 * 82.58455 * 8 7 6 10 10 N 1.46902 * 111.00300 * 206.41954 * 8 7 6 11 11 C 1.46903 * 110.99656 * 172.10184 * 10 8 7 12 12 C 1.46897 * 111.00202 * 296.06077 * 10 8 7 13 13 C 1.50703 * 109.46841 * 169.99730 * 12 10 8 14 14 H 1.08001 * 120.00022 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99808 * 179.72146 * 13 12 10 16 16 N 1.31521 * 120.00120 * 0.28095 * 15 13 12 17 17 Si 1.86797 * 120.00237 * 180.27836 * 15 13 12 18 18 H 1.48502 * 109.47092 * 89.99989 * 17 15 13 19 19 H 1.48501 * 109.47299 * 210.00666 * 17 15 13 20 20 H 1.48500 * 109.46971 * 330.00356 * 17 15 13 21 21 C 1.47417 * 125.64857 * 180.02562 * 5 3 2 22 22 H 1.09010 * 109.46979 * 300.00401 * 1 2 3 23 23 H 1.09004 * 109.47008 * 59.99961 * 1 2 3 24 24 H 1.08995 * 109.47414 * 179.97438 * 1 2 3 25 25 H 0.97001 * 120.00003 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.88428 * 300.51545 * 6 5 3 27 27 H 1.09000 * 109.88074 * 61.68593 * 6 5 3 28 28 H 1.08995 * 110.72114 * 263.83391 * 7 6 5 29 29 H 1.08994 * 110.71975 * 140.55766 * 7 6 5 30 30 H 1.08999 * 109.46797 * 178.72589 * 11 10 8 31 31 H 1.08996 * 109.47592 * 298.72324 * 11 10 8 32 32 H 1.08995 * 109.46625 * 58.72958 * 11 10 8 33 33 H 1.09001 * 109.47088 * 50.00169 * 12 10 8 34 34 H 1.08999 * 109.47022 * 289.99880 * 12 10 8 35 35 H 0.96996 * 120.00194 * 179.97438 * 16 15 13 36 36 H 1.09003 * 110.37194 * 36.99083 * 21 5 3 37 37 H 1.09002 * 110.36586 * 274.67093 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4867 1.1671 -0.0005 6 6 4.3435 -0.0276 -0.0001 7 6 5.8078 0.4587 0.0272 8 6 5.6875 1.8909 0.6119 9 1 5.6329 1.8659 1.7003 10 7 6.8002 2.7383 0.1626 11 6 6.5901 4.1371 0.5593 12 6 8.0836 2.2344 0.6694 13 6 9.2133 2.9712 -0.0030 14 1 8.9992 3.7375 -0.7334 15 6 10.5200 2.6714 0.3189 16 7 10.7807 1.7386 1.2086 17 14 11.9201 3.5900 -0.5088 18 1 12.2613 4.7953 0.2889 19 1 13.1083 2.7038 -0.5997 20 1 11.5039 4.0014 -1.8736 21 6 4.3459 2.3650 -0.0001 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.9500 -0.8400 0.0004 26 1 4.1369 -0.6316 0.8834 27 1 4.1641 -0.6127 -0.9021 28 1 6.2237 0.4870 -0.9799 29 1 6.4121 -0.1737 0.6775 30 1 7.4390 4.7383 0.2340 31 1 5.6789 4.5136 0.0946 32 1 6.4966 4.1970 1.6436 33 1 8.1660 1.1689 0.4545 34 1 8.1364 2.3930 1.7465 35 1 11.7000 1.5274 1.4348 36 1 3.9041 3.1487 0.6155 37 1 4.4990 2.7225 -1.0184 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260148862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:18 Heat of formation + Delta-G solvation = -17.418905 kcal Electronic energy + Delta-G solvation = -17647.860967 eV Core-core repulsion = 14846.458457 eV Total energy + Delta-G solvation = -2801.402510 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.17080 -38.04176 -35.39915 -34.57097 -32.54075 -30.63947 -28.85424 -27.00165 -26.52606 -24.77644 -22.59760 -21.71963 -19.92806 -19.52253 -18.23127 -16.48688 -16.37643 -15.78684 -15.09310 -14.72789 -14.57590 -13.97027 -13.61481 -13.42689 -13.16188 -12.86316 -12.67384 -12.30660 -12.21789 -11.99539 -11.67658 -11.24002 -10.88927 -10.75208 -10.63666 -10.54810 -10.34675 -10.14732 -9.79966 -9.26017 -9.22879 -8.46539 -8.43198 -7.33508 -6.05700 -4.06765 2.64629 3.23119 3.30587 3.37005 3.41425 3.98575 4.40022 4.75043 4.85071 4.96455 5.05243 5.23558 5.30439 5.38430 5.48777 5.62305 5.68568 5.71395 6.03122 6.08903 6.16026 6.22752 6.31066 6.36102 6.37029 6.52722 6.74712 7.03543 7.25487 7.29852 7.76557 7.96159 8.03184 8.13985 8.50115 8.60335 9.00880 9.57586 11.05207 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.058214 B = 0.004566 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.868503 B = 6130.913763 C = 6418.060982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.752 5.752 3 C 0.720 3.280 4 O -0.593 6.593 5 N -0.634 5.634 6 C 0.101 3.899 7 C -0.118 4.118 8 C 0.071 3.929 9 H 0.046 0.954 10 N -0.529 5.529 11 C 0.034 3.966 12 C 0.192 3.808 13 C -0.507 4.507 14 H 0.064 0.936 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.134 3.866 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.397 0.603 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.012 0.988 33 H 0.034 0.966 34 H -0.009 1.009 35 H 0.261 0.739 36 H 0.071 0.929 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.835 -6.087 -1.436 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.408 5.408 3 C 0.421 3.579 4 O -0.472 6.472 5 N -0.372 5.372 6 C -0.022 4.022 7 C -0.156 4.156 8 C -0.039 4.039 9 H 0.064 0.936 10 N -0.254 5.254 11 C -0.115 4.115 12 C 0.067 3.933 13 C -0.546 4.546 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.197 1.197 21 C 0.011 3.989 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.230 0.770 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.052 0.948 34 H 0.008 0.992 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.220 -5.411 -1.863 16.260 hybrid contribution 1.098 -0.070 0.593 1.250 sum -14.122 -5.481 -1.270 15.202 Atomic orbital electron populations 1.21360 0.78355 1.01713 1.02183 1.44919 1.07549 1.07223 1.81125 1.15442 0.80290 0.84172 0.77958 1.90912 1.67131 1.30505 1.58636 1.47570 1.03180 1.09027 1.77429 1.22067 0.91446 0.87947 1.00767 1.22634 0.93370 0.96034 1.03611 1.22693 0.91111 0.93592 0.96539 0.93632 1.62193 1.02375 1.01191 1.59666 1.22263 1.01287 0.90861 0.97079 1.19762 0.83751 0.96387 0.93361 1.21159 0.90001 1.20363 1.23084 0.91788 1.24978 0.98903 0.95398 0.95299 1.69954 1.19746 1.31384 1.32792 0.86501 0.81531 0.79485 0.79932 1.20761 1.21281 1.19739 1.22128 0.88518 0.86491 1.01754 0.92504 0.92484 0.90830 0.76970 0.91999 0.91730 0.89139 0.89939 0.90386 0.93341 0.96947 0.94757 0.99167 0.92927 0.91022 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.95 10.70 59.84 0.64 1.59 16 2 N -0.75 -8.22 5.67 -72.07 -0.41 -8.63 16 3 C 0.72 11.06 8.49 -86.91 -0.74 10.32 16 4 O -0.59 -11.43 16.60 5.29 0.09 -11.34 16 5 N -0.63 -9.31 3.33 -176.26 -0.59 -9.89 16 6 C 0.10 1.21 6.15 -3.07 -0.02 1.19 16 7 C -0.12 -1.77 5.43 -24.89 -0.14 -1.91 16 8 C 0.07 1.23 2.71 -65.57 -0.18 1.05 16 9 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 10 N -0.53 -10.99 4.65 -233.76 -1.09 -12.07 16 11 C 0.03 0.65 9.15 60.07 0.55 1.20 16 12 C 0.19 4.80 4.61 -4.98 -0.02 4.78 16 13 C -0.51 -13.88 8.44 -34.44 -0.29 -14.17 16 14 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 15 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 17 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.13 2.18 5.26 -2.55 -0.01 2.17 16 22 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.40 3.26 7.81 -40.82 -0.32 2.94 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.08 1.23 7.88 -51.93 -0.41 0.82 16 30 H 0.08 1.60 6.73 -51.93 -0.35 1.25 16 31 H 0.05 0.81 7.14 -51.93 -0.37 0.44 16 32 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.03 0.89 6.84 -51.93 -0.35 0.54 16 34 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.07 1.21 7.94 -51.93 -0.41 0.80 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 301.99 15.07 4.55 4.55 Total: -1.00 -32.31 301.99 -7.98 -40.30 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.95 Total: -1.48 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -0.30 Total: 7.67 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -1.35 Total: -55.96 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.31 -7.98 -40.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260148862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.877 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds