Wall clock time and date at job start Mon Mar 30 2020 04:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 120.00261 * 2 1 4 4 O 1.21586 * 120.00018 * 0.02562 * 3 2 1 5 5 N 1.34781 * 120.00045 * 180.02562 * 3 2 1 6 6 C 1.47020 * 125.64747 * 359.95146 * 5 3 2 7 7 C 1.54323 * 107.27160 * 181.09702 * 6 5 3 8 8 C 1.55165 * 102.93994 * 22.19697 * 7 6 5 9 9 H 1.09000 * 111.03264 * 82.58455 * 8 7 6 10 10 N 1.46902 * 111.00300 * 206.41954 * 8 7 6 11 11 C 1.46903 * 110.99656 * 172.10184 * 10 8 7 12 12 C 1.46897 * 111.00202 * 296.06077 * 10 8 7 13 13 C 1.50703 * 109.46841 * 169.99730 * 12 10 8 14 14 H 1.08001 * 120.00022 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99808 * 179.72146 * 13 12 10 16 16 N 1.31521 * 120.00120 * 0.28095 * 15 13 12 17 17 Si 1.86797 * 120.00237 * 180.27836 * 15 13 12 18 18 H 1.48502 * 109.47092 * 89.99989 * 17 15 13 19 19 H 1.48501 * 109.47299 * 210.00666 * 17 15 13 20 20 H 1.48500 * 109.46971 * 330.00356 * 17 15 13 21 21 C 1.47417 * 125.64857 * 180.02562 * 5 3 2 22 22 H 1.09010 * 109.46979 * 300.00401 * 1 2 3 23 23 H 1.09004 * 109.47008 * 59.99961 * 1 2 3 24 24 H 1.08995 * 109.47414 * 179.97438 * 1 2 3 25 25 H 0.97001 * 120.00003 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.88428 * 300.51545 * 6 5 3 27 27 H 1.09000 * 109.88074 * 61.68593 * 6 5 3 28 28 H 1.08995 * 110.72114 * 263.83391 * 7 6 5 29 29 H 1.08994 * 110.71975 * 140.55766 * 7 6 5 30 30 H 1.08999 * 109.46797 * 178.72589 * 11 10 8 31 31 H 1.08996 * 109.47592 * 298.72324 * 11 10 8 32 32 H 1.08995 * 109.46625 * 58.72958 * 11 10 8 33 33 H 1.09001 * 109.47088 * 50.00169 * 12 10 8 34 34 H 1.08999 * 109.47022 * 289.99880 * 12 10 8 35 35 H 0.96996 * 120.00194 * 179.97438 * 16 15 13 36 36 H 1.09003 * 110.37194 * 36.99083 * 21 5 3 37 37 H 1.09002 * 110.36586 * 274.67093 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4867 1.1671 -0.0005 6 6 4.3435 -0.0276 -0.0001 7 6 5.8078 0.4587 0.0272 8 6 5.6875 1.8909 0.6119 9 1 5.6329 1.8659 1.7003 10 7 6.8002 2.7383 0.1626 11 6 6.5901 4.1371 0.5593 12 6 8.0836 2.2344 0.6694 13 6 9.2133 2.9712 -0.0030 14 1 8.9992 3.7375 -0.7334 15 6 10.5200 2.6714 0.3189 16 7 10.7807 1.7386 1.2086 17 14 11.9201 3.5900 -0.5088 18 1 12.2613 4.7953 0.2889 19 1 13.1083 2.7038 -0.5997 20 1 11.5039 4.0014 -1.8736 21 6 4.3459 2.3650 -0.0001 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.9500 -0.8400 0.0004 26 1 4.1369 -0.6316 0.8834 27 1 4.1641 -0.6127 -0.9021 28 1 6.2237 0.4870 -0.9799 29 1 6.4121 -0.1737 0.6775 30 1 7.4390 4.7383 0.2340 31 1 5.6789 4.5136 0.0946 32 1 6.4966 4.1970 1.6436 33 1 8.1660 1.1689 0.4545 34 1 8.1364 2.3930 1.7465 35 1 11.7000 1.5274 1.4348 36 1 3.9041 3.1487 0.6155 37 1 4.4990 2.7225 -1.0184 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260148862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:18 Heat of formation + Delta-G solvation = -41.723794 kcal Electronic energy + Delta-G solvation = -17648.914906 eV Core-core repulsion = 14846.458457 eV Total energy + Delta-G solvation = -2802.456449 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.35613 -39.40664 -36.93212 -35.60873 -34.56817 -31.92144 -30.30930 -28.68362 -27.62862 -26.36140 -23.89169 -23.39751 -21.04662 -20.99873 -19.35276 -18.45481 -17.74417 -16.92201 -16.65068 -16.22443 -15.86826 -15.31396 -15.14725 -14.89791 -14.30510 -14.21682 -13.95820 -13.88517 -13.46213 -13.17345 -13.00211 -12.87727 -12.76794 -12.54061 -12.20214 -12.09479 -11.84103 -11.58318 -11.43261 -11.23427 -10.58166 -10.28221 -9.53753 -9.07661 -8.18269 -6.27002 1.43730 1.44183 1.55213 1.57723 2.06605 2.42619 3.02093 3.15173 3.28942 3.58096 3.71499 4.11102 4.26395 4.33846 4.46164 4.53482 4.60131 4.67293 4.69742 4.76902 4.89217 4.96063 5.02796 5.06621 5.14626 5.20672 5.27157 5.35033 5.47651 5.68376 6.03413 6.07546 6.29324 6.62014 6.88531 6.93938 7.42275 7.49507 8.92681 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.058214 B = 0.004566 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.868503 B = 6130.913763 C = 6418.060982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.736 5.736 3 C 0.713 3.287 4 O -0.639 6.639 5 N -0.636 5.636 6 C 0.109 3.891 7 C -0.116 4.116 8 C 0.068 3.932 9 H 0.038 0.962 10 N -0.534 5.534 11 C 0.036 3.964 12 C 0.209 3.791 13 C -0.524 4.524 14 H 0.062 0.938 15 C 0.005 3.995 16 N -0.933 5.933 17 Si 0.965 3.035 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.145 3.855 22 H 0.046 0.954 23 H 0.047 0.953 24 H 0.116 0.884 25 H 0.413 0.587 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.010 0.990 33 H 0.021 0.979 34 H -0.041 1.041 35 H 0.264 0.736 36 H 0.062 0.938 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.566 -7.103 -2.210 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.392 5.392 3 C 0.414 3.586 4 O -0.521 6.521 5 N -0.374 5.374 6 C -0.013 4.013 7 C -0.154 4.154 8 C -0.042 4.042 9 H 0.056 0.944 10 N -0.259 5.259 11 C -0.112 4.112 12 C 0.083 3.917 13 C -0.562 4.562 14 H 0.080 0.920 15 C -0.194 4.194 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.190 1.190 21 C 0.021 3.979 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.135 0.865 25 H 0.250 0.750 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.029 0.971 33 H 0.039 0.961 34 H -0.023 1.023 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.971 -6.478 -2.643 17.436 hybrid contribution 1.260 0.220 0.855 1.539 sum -14.710 -6.258 -1.788 16.086 Atomic orbital electron populations 1.21572 0.76876 1.04259 1.01271 1.44860 1.08412 1.06469 1.79437 1.15685 0.80244 0.84763 0.77871 1.90879 1.68017 1.32489 1.60722 1.47543 1.03294 1.09193 1.77382 1.22157 0.88563 0.87113 1.03481 1.22590 0.95723 0.94457 1.02613 1.22728 0.90519 0.94701 0.96285 0.94381 1.62102 1.01886 1.02263 1.59610 1.22253 1.01801 0.89978 0.97177 1.19409 0.85584 0.95503 0.91237 1.21476 0.91084 1.20495 1.23131 0.91984 1.25830 1.01525 0.96171 0.95833 1.70067 1.20438 1.32747 1.34054 0.85440 0.78201 0.78236 0.79083 1.20142 1.20768 1.18990 1.21843 0.87976 0.87168 1.00913 0.93492 0.93392 0.86526 0.75043 0.89396 0.88852 0.90205 0.90083 0.91926 0.90734 0.97111 0.96059 1.02320 0.92727 0.91954 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.55 10.70 127.77 1.37 2.92 16 2 N -0.74 -14.02 5.67 -500.19 -2.84 -16.85 16 3 C 0.71 20.76 8.49 179.05 1.52 22.28 16 4 O -0.64 -24.34 16.60 -3.99 -0.07 -24.41 16 5 N -0.64 -17.60 3.33 -829.81 -2.76 -20.36 16 6 C 0.11 2.31 6.15 86.73 0.53 2.84 16 7 C -0.12 -3.35 5.43 31.79 0.17 -3.18 16 8 C 0.07 2.34 2.71 46.30 0.13 2.46 16 9 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 10 N -0.53 -22.43 4.65 -893.47 -4.16 -26.59 16 11 C 0.04 1.41 9.15 127.69 1.17 2.57 16 12 C 0.21 10.70 4.61 85.56 0.39 11.09 16 13 C -0.52 -28.99 8.44 25.60 0.22 -28.77 16 14 H 0.06 3.39 7.13 -2.91 -0.02 3.37 16 15 C 0.00 0.25 5.46 84.65 0.46 0.72 16 16 N -0.93 -54.76 13.29 21.45 0.28 -54.47 16 17 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 C 0.15 4.64 5.26 86.85 0.46 5.09 16 22 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 23 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.41 5.17 7.81 -92.71 -0.72 4.45 16 26 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.08 2.37 7.88 -2.39 -0.02 2.35 16 30 H 0.06 2.60 6.73 -2.39 -0.02 2.58 16 31 H 0.07 2.48 7.14 -2.39 -0.02 2.46 16 32 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.02 1.14 6.84 -2.39 -0.02 1.12 16 34 H -0.04 -2.31 8.12 -2.39 -0.02 -2.33 16 35 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 36 H 0.06 2.10 7.94 -2.39 -0.02 2.08 16 37 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -70.62 301.99 -0.77 -71.39 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 0.32 Total: 7.62 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 6.42 Total: 18.04 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -9.47 Total: -118.28 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.07 Total: -24.41 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -70.62 -0.77 -71.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260148862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.668 kcal (2) G-P(sol) polarization free energy of solvation -70.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds