Wall clock time and date at job start Mon Mar 30 2020 03:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 7 12 12 O 1.21584 * 120.00541 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99489 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99511 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46736 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.46236 * 295.00019 * 15 14 13 17 17 C 1.53032 * 109.46241 * 175.01789 * 15 14 13 18 18 C 1.53117 * 109.28312 * 180.79270 * 17 15 14 19 19 C 1.53125 * 109.14927 * 57.67110 * 18 17 15 20 20 C 1.53037 * 109.27954 * 302.34574 * 19 18 17 21 21 N 1.46846 * 109.52667 * 59.17664 * 20 19 18 22 22 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 24 24 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 25 25 H 0.96996 * 119.99606 * 0.02562 * 10 9 7 26 26 H 0.97003 * 120.00377 * 0.02562 * 13 11 10 27 27 H 1.08994 * 109.47121 * 299.99693 * 14 13 11 28 28 H 1.08994 * 109.47503 * 60.00345 * 14 13 11 29 29 H 1.08998 * 109.50733 * 300.75058 * 17 15 14 30 30 H 1.09001 * 109.50040 * 60.86594 * 17 15 14 31 31 H 1.08998 * 109.52887 * 297.77383 * 18 17 15 32 32 H 1.08993 * 109.58049 * 177.60016 * 18 17 15 33 33 H 1.08999 * 109.50571 * 182.40107 * 19 18 17 34 34 H 1.09002 * 109.53101 * 62.30022 * 19 18 17 35 35 H 1.09005 * 109.46105 * 299.16130 * 20 19 18 36 36 H 1.08998 * 109.46335 * 179.19946 * 20 19 18 37 37 H 1.00893 * 111.00111 * 174.16881 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 5.3249 -2.8216 0.0009 12 8 6.1150 -1.8975 0.0014 13 7 5.7741 -4.0923 0.0003 14 6 7.2145 -4.3600 0.0008 15 6 7.4523 -5.8714 0.0006 16 1 7.0793 -6.2979 0.9317 17 6 8.9515 -6.1517 -0.1242 18 6 9.1831 -7.6651 -0.1440 19 6 8.3958 -8.2786 -1.3052 20 6 6.9125 -7.9367 -1.1466 21 7 6.7438 -6.4780 -1.1338 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6801 0.8912 24 1 3.8752 -0.6804 -0.8888 25 1 3.3695 -3.3125 0.0002 26 1 5.1437 -4.8296 -0.0005 27 1 7.6659 -3.9206 -0.8887 28 1 7.6652 -3.9218 0.8912 29 1 9.3280 -5.7137 -1.0486 30 1 9.4754 -5.7147 0.7259 31 1 8.8420 -8.0982 0.7963 32 1 10.2454 -7.8704 -0.2756 33 1 8.5223 -9.3612 -1.2990 34 1 8.7634 -7.8746 -2.2485 35 1 6.5420 -8.3533 -0.2099 36 1 6.3511 -8.3600 -1.9794 37 1 5.7666 -6.2271 -1.1256 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260837689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:10 Heat of formation + Delta-G solvation = -42.995770 kcal Electronic energy + Delta-G solvation = -17180.920163 eV Core-core repulsion = 14378.408557 eV Total energy + Delta-G solvation = -2802.511606 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.153 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.67556 -38.63407 -34.82744 -34.07197 -32.36770 -32.18201 -31.27610 -27.97886 -25.99359 -23.73069 -22.28962 -21.48397 -20.31065 -19.91173 -18.33612 -16.78058 -16.19248 -15.84696 -15.58406 -14.66490 -14.58893 -14.36945 -14.05600 -13.85273 -13.42565 -13.11449 -12.89197 -12.75996 -12.35344 -12.16796 -11.90088 -11.35009 -11.06593 -10.97377 -10.73794 -10.69104 -10.64827 -9.93677 -9.57035 -9.42781 -8.83507 -8.72144 -8.67996 -7.97637 -6.18407 -4.20091 3.24170 3.31034 3.37936 3.46338 3.80765 3.92251 4.37030 4.50141 4.55956 4.66547 4.86776 4.98825 5.03226 5.13979 5.17414 5.25339 5.41398 5.45024 5.60347 5.67496 5.72046 5.84573 5.86489 5.99020 6.13189 6.72498 6.76852 6.82590 7.11961 7.15410 7.27376 7.43928 7.58453 8.30887 8.71736 8.84340 9.24509 9.43611 10.93607 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.055600 B = 0.004025 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.480220 B = 6954.824770 C = 7338.222208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.723 5.723 11 C 0.696 3.304 12 O -0.603 6.603 13 N -0.754 5.754 14 C 0.147 3.853 15 C 0.078 3.922 16 H 0.043 0.957 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.119 4.119 20 C 0.058 3.942 21 N -0.683 5.683 22 H 0.267 0.733 23 H 0.023 0.977 24 H 0.019 0.981 25 H 0.391 0.609 26 H 0.388 0.612 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.075 0.925 37 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.396 -17.061 -0.348 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.115 3.885 10 N -0.375 5.375 11 C 0.395 3.605 12 O -0.482 6.482 13 N -0.412 5.412 14 C 0.022 3.978 15 C -0.032 4.032 16 H 0.061 0.939 17 C -0.149 4.149 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.072 4.072 21 N -0.317 5.317 22 H 0.077 0.923 23 H 0.041 0.959 24 H 0.037 0.963 25 H 0.224 0.776 26 H 0.221 0.779 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 16.450 -15.920 -0.779 22.905 hybrid contribution -0.946 -0.114 0.716 1.192 sum 15.504 -16.033 -0.063 22.304 Atomic orbital electron populations 1.69882 1.06219 1.27393 1.49658 1.24784 0.94788 0.99183 0.93901 0.86805 0.80596 0.83150 0.79075 1.19834 1.20967 1.18425 1.21099 0.88596 0.95168 1.53104 0.90335 1.19356 0.94775 0.77693 0.96638 1.45382 1.03709 1.11002 1.77438 1.16090 0.83529 0.82641 0.78211 1.90863 1.55415 1.43160 1.58795 1.45070 1.07420 1.06447 1.82278 1.21179 0.80916 0.93203 1.02510 1.21748 0.95519 0.93889 0.92055 0.93884 1.21557 0.94160 0.96239 1.02955 1.21564 1.00178 0.95551 0.98515 1.21599 0.94751 0.99886 0.99402 1.21922 0.97100 0.87936 1.00216 1.60277 1.17359 1.09388 1.44704 0.92299 0.95940 0.96349 0.77561 0.77916 0.91031 0.91523 0.90630 0.91205 0.92330 0.91678 0.91776 0.91039 0.95292 0.90680 0.83715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.54 -15.07 9.83 -34.44 -0.34 -15.41 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.24 6.02 4.50 -5.19 -0.02 6.00 16 10 N -0.72 -15.13 5.55 -66.41 -0.37 -15.50 16 11 C 0.70 14.01 8.57 -86.92 -0.74 13.27 16 12 O -0.60 -14.65 16.34 5.29 0.09 -14.56 16 13 N -0.75 -10.93 5.26 -65.22 -0.34 -11.27 16 14 C 0.15 1.88 5.37 -4.04 -0.02 1.86 16 15 C 0.08 0.76 2.68 -67.72 -0.18 0.58 16 16 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 17 C -0.11 -0.95 5.37 -26.65 -0.14 -1.09 16 18 C -0.12 -0.88 6.00 -26.61 -0.16 -1.04 16 19 C -0.12 -0.87 6.09 -26.65 -0.16 -1.04 16 20 C 0.06 0.46 6.55 -3.83 -0.03 0.44 16 21 N -0.68 -6.57 6.50 -106.75 -0.69 -7.26 16 22 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 24 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 25 H 0.39 7.14 8.33 -40.82 -0.34 6.80 16 26 H 0.39 4.48 7.12 -40.82 -0.29 4.19 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.34 3.21 7.07 -39.30 -0.28 2.94 16 LS Contribution 299.26 15.07 4.51 4.51 Total: -1.00 -32.88 299.26 -8.51 -41.39 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.90 Total: 5.94 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -1.90 Total: 5.67 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.63 Total: -60.04 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.09 Total: -14.56 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.88 -8.51 -41.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260837689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.610 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds